BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146752.12 + phase: 2 /pseudo
(127 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC226467 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr... 27 1.9
TC219398 similar to UP|Q7U2T0 (Q7U2T0) PE-PGRS family protein, p... 27 1.9
TC215813 similar to UP|O49529 (O49529) Predicted protein, partia... 27 1.9
TC223009 weakly similar to UP|Q94KL8 (Q94KL8) Rhizome secoisolar... 27 3.3
TC204213 similar to UP|Q9LZH9 (Q9LZH9) 60S RIBOSOMAL PROTEIN L7A... 26 4.3
TC203459 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin ... 26 4.3
BE610832 26 5.6
TC225836 homologue to UP|KC2C_ARATH (P40229) Casein kinase II be... 26 5.6
TC204676 similar to UP|Q94C19 (Q94C19) At1g26850/T2P11_4, partia... 26 5.6
TC225976 similar to UP|O81763 (O81763) Protein kinase-like prote... 25 7.3
TC215808 similar to UP|O49529 (O49529) Predicted protein, partia... 25 7.3
BI471596 25 9.6
TC217107 homologue to UP|Q7X9I1 (Q7X9I1) MYB transcription facto... 25 9.6
TC213932 similar to UP|Q75LD6 (Q75LD6) Sarcoplasmic reticulum pr... 25 9.6
TC234015 25 9.6
TC204209 homologue to GB|BAC22311.1|24414062|AP003884 60S riboso... 25 9.6
BE556613 25 9.6
>TC226467 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
precursor, partial (6%)
Length = 1017
Score = 27.3 bits (59), Expect = 1.9
Identities = 10/17 (58%), Positives = 11/17 (63%)
Frame = -3
Query: 6 GGKGVVVGNGVGGCGCG 22
G GV G+ GGCGCG
Sbjct: 340 GDVGVTTGDTFGGCGCG 290
>TC219398 similar to UP|Q7U2T0 (Q7U2T0) PE-PGRS family protein, partial (4%)
Length = 612
Score = 27.3 bits (59), Expect = 1.9
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 11 VVGNGVGGCGCGRR 24
V G G GGCGCG R
Sbjct: 145 VRGGGAGGCGCGSR 186
>TC215813 similar to UP|O49529 (O49529) Predicted protein, partial (13%)
Length = 663
Score = 27.3 bits (59), Expect = 1.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 3 FLVGGKGVVVGNGVGGCGCGRR 24
F VGG G+ +G+G+ G GRR
Sbjct: 331 FFVGGNGIGIGDGIFR*GIGRR 266
>TC223009 weakly similar to UP|Q94KL8 (Q94KL8) Rhizome secoisolariciresinol
dehydrogenase (Fragment), partial (44%)
Length = 631
Score = 26.6 bits (57), Expect = 3.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 7 GKGVVVGNGVGGCGCGRRNF 26
G G + G+G G GCGR NF
Sbjct: 334 GGGELEGSGFKGKGCGRSNF 393
>TC204213 similar to UP|Q9LZH9 (Q9LZH9) 60S RIBOSOMAL PROTEIN L7A protein
(AT3g62870/F26K9_300), partial (24%)
Length = 798
Score = 26.2 bits (56), Expect = 4.3
Identities = 16/49 (32%), Positives = 25/49 (50%)
Frame = -2
Query: 36 MFLCSLLRLMFGSGYRTLPKVTLFVGYMICSQIRSLLRFCRMLI*FGIN 84
+ LCS RL FGS T P +++ V ++I + SL + F +N
Sbjct: 470 LLLCSGFRLRFGSHDSTTPFLSVLVIFVIEISLDSLQNSAELQFIFILN 324
>TC203459 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (53%)
Length = 860
Score = 26.2 bits (56), Expect = 4.3
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 26 F*RSVGYYFLMFLCSLLRL 44
F RS+G++FLMFL LL L
Sbjct: 656 FRRSLGFFFLMFLKGLLLL 712
>BE610832
Length = 368
Score = 25.8 bits (55), Expect = 5.6
Identities = 11/16 (68%), Positives = 12/16 (74%)
Frame = -2
Query: 7 GKGVVVGNGVGGCGCG 22
G GVVV G+GGCG G
Sbjct: 172 GDGVVVEFGLGGCGRG 125
>TC225836 homologue to UP|KC2C_ARATH (P40229) Casein kinase II beta' chain
(CK II) , partial (80%)
Length = 1339
Score = 25.8 bits (55), Expect = 5.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 7 GKGVVVGNGVGGCGCGRR 24
G V+ +G GG GCGRR
Sbjct: 376 GGAVLAVDGAGGSGCGRR 323
>TC204676 similar to UP|Q94C19 (Q94C19) At1g26850/T2P11_4, partial (25%)
Length = 857
Score = 25.8 bits (55), Expect = 5.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 22 GRRNF*RSVGYYFLMFLCSLLRLMFGSGYRTLPKVTLFVGY 62
GRR ++ Y L+ LCS + +F P L+VG+
Sbjct: 689 GRRRINSNLPYQSLLLLCSTIFFLFSLFIIFFPPFLLWVGF 567
>TC225976 similar to UP|O81763 (O81763) Protein kinase-like protein , partial
(24%)
Length = 430
Score = 25.4 bits (54), Expect = 7.3
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -3
Query: 13 GNGVGGCGCGRR 24
G G GGCGCG R
Sbjct: 152 GYGGGGCGCGER 117
>TC215808 similar to UP|O49529 (O49529) Predicted protein, partial (20%)
Length = 1141
Score = 25.4 bits (54), Expect = 7.3
Identities = 10/21 (47%), Positives = 15/21 (70%)
Frame = -1
Query: 4 LVGGKGVVVGNGVGGCGCGRR 24
+V G G+ +G+G+ G G GRR
Sbjct: 337 VVSGIGIGIGDGLFGLGIGRR 275
>BI471596
Length = 407
Score = 25.0 bits (53), Expect = 9.6
Identities = 13/41 (31%), Positives = 22/41 (52%)
Frame = +2
Query: 32 YYFLMFLCSLLRLMFGSGYRTLPKVTLFVGYMICSQIRSLL 72
+YFL FLC++ FG+ P + + ++ S RSL+
Sbjct: 254 FYFLYFLCTMHSAKFGN-----PFCNIIITCILSSYERSLI 361
>TC217107 homologue to UP|Q7X9I1 (Q7X9I1) MYB transcription factor R2R3
type, partial (68%)
Length = 1058
Score = 25.0 bits (53), Expect = 9.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 30 VGYYFLMFLCSLLRLMFGSGYRTLPKVTL 58
+G + L+ LCS+ + Y+T PK+ L
Sbjct: 52 IGSFSLLSLCSVPSTLESKAYKTTPKLPL 138
>TC213932 similar to UP|Q75LD6 (Q75LD6) Sarcoplasmic reticulum protein (With
alternative splicing), partial (43%)
Length = 456
Score = 25.0 bits (53), Expect = 9.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 34 FLMFLCSLLRLMFGSGYRTLPKVTLFVGYMICSQIRSLLR 73
F +F C L + + L + LF+ +++CS IRS R
Sbjct: 419 FSLFQCFLSLINHSLLTKILSLLQLFIYHLLCSSIRSNYR 300
>TC234015
Length = 473
Score = 25.0 bits (53), Expect = 9.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 48 SGYRTLPKVTLFVGYMICSQIRSLLRFCR 76
+ Y+ P VG+ CSQI RFCR
Sbjct: 89 NSYKAFPMCGNHVGF--CSQINRACRFCR 9
>TC204209 homologue to GB|BAC22311.1|24414062|AP003884 60S ribosomal protein
L7A {Oryza sativa (japonica cultivar-group);} , partial
(80%)
Length = 1089
Score = 25.0 bits (53), Expect = 9.6
Identities = 15/49 (30%), Positives = 25/49 (50%)
Frame = -3
Query: 36 MFLCSLLRLMFGSGYRTLPKVTLFVGYMICSQIRSLLRFCRMLI*FGIN 84
+ LCS RL FGS T P +++ V +++ + SL + F +N
Sbjct: 808 LLLCSGFRLGFGSHDPTTPLLSVLVIFVVEVSLDSLQNSAELQFIFILN 662
>BE556613
Length = 214
Score = 25.0 bits (53), Expect = 9.6
Identities = 16/51 (31%), Positives = 23/51 (44%)
Frame = -3
Query: 29 SVGYYFLMFLCSLLRLMFGSGYRTLPKVTLFVGYMICSQIRSLLRFCRMLI 79
S+GYY + L G+R K FVG M S I ++ C +L+
Sbjct: 200 SIGYYHAWRYLPPISLCRCDGFRAPQKKRKFVG*MF*SLISTVPHSCSLLM 48
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.358 0.167 0.583
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,534,438
Number of Sequences: 63676
Number of extensions: 104064
Number of successful extensions: 1331
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of query: 127
length of database: 12,639,632
effective HSP length: 86
effective length of query: 41
effective length of database: 7,163,496
effective search space: 293703336
effective search space used: 293703336
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 53 (25.0 bits)
Medicago: description of AC146752.12