TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145221.10 - phase: 0 
         (68 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza s...    44  2e-05
BE556647 similar to GP|1763230|gb|A 3-hydroxy-3-methylglutaryl c...    28  0.91
AW279364 similar to GP|29420787|db L-asparaginase {Glycine max},...    27  2.0
TC221307 similar to UP|Q94A51 (Q94A51) AT3g49060/T2J13_100, part...    26  4.5
TC212175 weakly similar to UP|Q9M3Y6 (Q9M3Y6) 68 kDa protein, pa...    25  5.9
TC230466 similar to UP|Q8RY60 (Q8RY60) At1g47330/T3F24_2, partia...    25  5.9
TC213015 UP|O07902 (O07902) Cytochrome c oxidase subunit III (Fr...    25  5.9
TC206720                                                               25  7.7
TC206719 similar to UP|2ACA_HUMAN (Q06190) Serine/threonine prot...    25  7.7

>BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza sativa
           (japonica cultivar-group)}, partial (7%)
          Length = 426

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 20/25 (80%), Positives = 21/25 (84%)
 Frame = +2

Query: 1   MTINKSQGQSLKHDGVYLPTPVFSH 25
           MTINKSQGQ L   G+YLPTPVFSH
Sbjct: 350 MTINKSQGQLLASVGLYLPTPVFSH 424


>BE556647 similar to GP|1763230|gb|A 3-hydroxy-3-methylglutaryl coenzyme a
          reductase {Camptotheca acuminata}, partial (16%)
          Length = 286

 Score = 28.1 bits (61), Expect = 0.91
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +3

Query: 8  GQSLKHDGVYLPTPVFSHGQLHVVVSKVTSREWLKILII 46
          G SLK   + +P  +FS GQ+++  SKV S  WL  ++I
Sbjct: 39 GASLKIL*IVIPCHLFSTGQVYLQGSKVFSVLWLGRMLI 155


>AW279364 similar to GP|29420787|db L-asparaginase {Glycine max}, partial
           (37%)
          Length = 370

 Score = 26.9 bits (58), Expect = 2.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 8   GQSLKHDGVYLPTPVFSHGQLHVVVSKVTSREW 40
           G+  KH+ V LP P      + ++  +VT+ EW
Sbjct: 73  GKGSKHNPV*LPNPNIGVRDVRILCGEVTANEW 171


>TC221307 similar to UP|Q94A51 (Q94A51) AT3g49060/T2J13_100, partial (6%)
          Length = 629

 Score = 25.8 bits (55), Expect = 4.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 17  YLPTPVFSHGQLHVVVSKVTSRE 39
           YLP+P+F  G   +V S ++++E
Sbjct: 376 YLPSPIFQDGSKSLVASFISTKE 308


>TC212175 weakly similar to UP|Q9M3Y6 (Q9M3Y6) 68 kDa protein, partial (33%)
          Length = 990

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 10/16 (62%), Positives = 12/16 (74%)
 Frame = -1

Query: 11  LKHDGVYLPTPVFSHG 26
           L H+G+YLP   FSHG
Sbjct: 612 LCHNGLYLPIANFSHG 565


>TC230466 similar to UP|Q8RY60 (Q8RY60) At1g47330/T3F24_2, partial (13%)
          Length = 704

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 15/41 (36%), Positives = 24/41 (57%)
 Frame = +2

Query: 19  PTPVFSHGQLHVVVSKVTSREWLKILIIDEDGEDTDETSNI 59
           P PVF   +  VVV  +T  + ++ L+ +E  ++TDE  NI
Sbjct: 191 PLPVFPPNE--VVVGVITMEDVIEELLQEEILDETDEYVNI 307


>TC213015 UP|O07902 (O07902) Cytochrome c oxidase subunit III (Fragment),
          partial (5%)
          Length = 465

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 10/16 (62%), Positives = 12/16 (74%)
 Frame = -2

Query: 11 LKHDGVYLPTPVFSHG 26
          L H+G+YLP   FSHG
Sbjct: 50 LCHNGLYLPIANFSHG 3


>TC206720 
          Length = 693

 Score = 25.0 bits (53), Expect = 7.7
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 38  REWLKILIIDEDGEDTDETSNIVYEE 63
           RE+++ L ++EDGED    S  V+EE
Sbjct: 218 REYIR-LSMEEDGEDMSNASGDVWEE 292


>TC206719 similar to UP|2ACA_HUMAN (Q06190) Serine/threonine protein
            phosphatase 2A, 72/130 kDa regulatory subunit B (PP2A,
            subunit B, B''-PR72/PR130) (PP2A, subunit B, B72/B130
            isoforms) (PP2A, subunit B, PR72/PR130 isoforms) (PP2A,
            subunit B, R3 isoform) , partial (3%)
          Length = 1892

 Score = 25.0 bits (53), Expect = 7.7
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 38   REWLKILIIDEDGEDTDETSNIVYEE 63
            RE+++ L ++EDGED    S  V+EE
Sbjct: 1589 REYIR-LSMEEDGEDMSNASGDVWEE 1663


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.314    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,873,833
Number of Sequences: 63676
Number of extensions: 30869
Number of successful extensions: 123
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of query: 68
length of database: 12,639,632
effective HSP length: 44
effective length of query: 24
effective length of database: 9,837,888
effective search space: 236109312
effective search space used: 236109312
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)