BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144930.1 - phase: 0 /pseudo
(1322 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CF922341 96 1e-19
BU084093 68 3e-11
AW706233 55 3e-07
TC228885 55 3e-07
CF921210 54 3e-07
CF922207 46 9e-05
TC228886 40 0.005
TC232676 similar to UP|Q6K709 (Q6K709) DNA-binding protein-like,... 40 0.009
TC215424 similar to UP|Q9MA04 (Q9MA04) F20B17.16, partial (26%) 40 0.009
TC228588 similar to UP|Q6NLV4 (Q6NLV4) At5g13480, partial (29%) 37 0.044
TC228334 similar to UP|Q9SW80 (Q9SW80) Bel1-like homeodomain 2 (... 37 0.075
BQ296385 37 0.075
BI786384 36 0.13
TC227291 weakly similar to UP|Q9SFY4 (Q9SFY4) T22C5.20, partial ... 35 0.17
TC227192 similar to UP|Q6L8U3 (Q6L8U3) Auxin response factor 1, ... 35 0.28
AW703629 35 0.28
CA785470 similar to GP|28411852|dbj| P0700D12.25 {Oryza sativa (... 34 0.37
TC224791 similar to UP|Q41707 (Q41707) Extensin class 1 protein ... 34 0.48
TC215827 similar to GB|AAP37794.1|30725544|BT008435 At3g63460 {A... 34 0.48
TC213885 weakly similar to UP|Q9VUB7 (Q9VUB7) CG32133-PA, partia... 33 0.63
>CF922341
Length = 675
Score = 95.5 bits (236), Expect = 1e-19
Identities = 59/172 (34%), Positives = 84/172 (48%), Gaps = 7/172 (4%)
Frame = +1
Query: 89 IPATNAASINATLPQTT---AAVTEPLVHTMPQSVNINTQHGSIPVTKTMEEMMEELAK- 144
IP N A L T A PL +T+ H T +M E+ K
Sbjct: 130 IPHHNLADFETCLTYATEGQAVGGIPLRNTLEGPQYHPQLHLLHSTTSKNPHVMAEMGKL 309
Query: 145 -ELRHEIKANRGNADSF--KTQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRK 201
L ++A G D ++L LV + P KFK+ DFD+Y G TCP+NH+ Y +K
Sbjct: 310 DHLEEGLRAIEGGEDYAFANLEELFLVPNIITPPKFKVLDFDKYKGTTCPKNHLKMYCQK 489
Query: 202 MGNYKDNDSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDELAAAFKSHYGFN 253
MG Y ++ L+IH FQ+SL A WYT+L + +H++ +L AF Y +N
Sbjct: 490 MGAYAKDEELLIHSFQESLTGVAVTWYTNLEPSRVHSWKDLMVAFVRQYQYN 645
>BU084093
Length = 421
Score = 67.8 bits (164), Expect = 3e-11
Identities = 39/115 (33%), Positives = 52/115 (44%), Gaps = 8/115 (6%)
Frame = -1
Query: 415 PGQPQVPVNAIAQQMKQQLPVQQQQNQQARPTFPP--------IPMLYAELLPTLLHRGH 466
P QP+ P A Q+ + N FPP +PM Y +LLP+L+
Sbjct: 346 PVQPKAPAQREAPQVPTPNTTRPVGNSNTTRNFPPRPFQEFTPLPMTYEDLLPSLIANHL 167
Query: 467 CTTRQGKPPPDPLPPRFRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQGKLTF 521
G+ P P + + C +H G GH VE C ALKY V+ L+D G LTF
Sbjct: 166 AVVTPGRVLQPPFPKWYDPNATCKYHGGVPGHSVEKCLALKYKVQHLMDAGWLTF 2
>AW706233
Length = 376
Score = 54.7 bits (130), Expect = 3e-07
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = -3
Query: 141 ELAKELRHEIKANRGNADSF--KTQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKY 198
E L+ KA G D ++L LV + P KFK+ +FD+Y G TCP+NH+ Y
Sbjct: 347 EKLDHLKERFKAIEGGQDYAFANLEELFLVXNIISPPKFKVLNFDKYKGTTCPKNHLKMY 168
Query: 199 VRKMGNYKDND 209
+KMG Y ++
Sbjct: 167 CQKMGAYAKDE 135
>TC228885
Length = 901
Score = 54.7 bits (130), Expect = 3e-07
Identities = 45/136 (33%), Positives = 57/136 (41%), Gaps = 2/136 (1%)
Frame = -3
Query: 391 PSYPYVPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPVQQQQNQQARPT--FP 448
P +P + H P H+ LP Q + P + Q Q+ N AR F
Sbjct: 761 PHHPVI----HKGHP*INHKVCLPHFQ*RTP------PLAQTKNTNQEMNFAARKPVEFT 612
Query: 449 PIPMLYAELLPTLLHRGHCTTRQGKPPPDPLPPRFRSDLKCDFHQGALGHDVEGCYALKY 508
PIP+ YA+LLP LL K P + S+ C H A G +E ALK
Sbjct: 611 PIPVSYADLLPYLLDNSMVAITLAKVHQPPFLREYDSNAMCACHGEAPGRSIEHYRALKR 432
Query: 509 IVKKLIDQGKLTFENN 524
V+ LID G L FE N
Sbjct: 431 KVQGLIDAGWLKFEEN 384
>CF921210
Length = 790
Score = 54.3 bits (129), Expect = 3e-07
Identities = 41/117 (35%), Positives = 55/117 (46%)
Frame = +2
Query: 408 YHQYPLPPGQPQVPVNAIAQQMKQQLPVQQQQNQQARPTFPPIPMLYAELLPTLLHRGHC 467
YH+ LP Q + P A + Q++ ++ + F PIP+ YA+LL LL
Sbjct: 236 YHKVCLPHFQ*RTPPLAQTKNTNQEVNFAARKPVE----FTPIPVSYADLLSYLLDNSMV 403
Query: 468 TTRQGKPPPDPLPPRFRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQGKLTFENN 524
K PL + S+ C GAL H +E C ALK V+ LID G L FE N
Sbjct: 404 AITLAKVHQPPLF*GYDSNATCG---GALRHSIEHCRALKRKVQGLIDAGWLKFEEN 565
>CF922207
Length = 616
Score = 46.2 bits (108), Expect = 9e-05
Identities = 33/94 (35%), Positives = 42/94 (44%)
Frame = -1
Query: 431 QQLPVQQQQNQQARPTFPPIPMLYAELLPTLLHRGHCTTRQGKPPPDPLPPRFRSDLKCD 490
QQ + QQ+ + P F ML L+P L K P P + S+ C
Sbjct: 601 QQKGILQQKACRVHPKFR-CHML--NLIPYPLDNSMVAITPTKVPQPPFFREYDSNATCA 431
Query: 491 FHQGALGHDVEGCYALKYIVKKLIDQGKLTFENN 524
+H GA GH +E C K+ V LID G L FE N
Sbjct: 430 YHGGAPGHSIEHCMTPKHKV*SLIDTG*LKFEEN 329
>TC228886
Length = 748
Score = 40.4 bits (93), Expect = 0.005
Identities = 19/42 (45%), Positives = 24/42 (56%)
Frame = +3
Query: 483 FRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQGKLTFENN 524
+ S+ C +H GA GH +E C K+ V LID G L FE N
Sbjct: 153 YDSNATCAYHGGASGHSIEHCMTPKHKV*SLIDTGWLKFEEN 278
>TC232676 similar to UP|Q6K709 (Q6K709) DNA-binding protein-like, partial
(57%)
Length = 926
Score = 39.7 bits (91), Expect = 0.009
Identities = 29/83 (34%), Positives = 36/83 (42%), Gaps = 3/83 (3%)
Frame = +1
Query: 408 YHQYPLPPGQPQVPVNAIAQQMKQQLPVQQQQNQQARPTFPPIPMLYAELLPTLLHRGHC 467
Y + PL Q + + QQ +QQ QQQQ QQ++ + M L P LLH G
Sbjct: 451 YERLPLEDDQGEEEMQVQQQQQQQQQQQQQQQQQQSQGLGEQVSMPMYNLPPNLLHNGQN 630
Query: 468 TTRQ---GKPPPDPLPPRFRSDL 487
G PP PP F S L
Sbjct: 631 MPHDVFWGAPPRP--PPSF*SPL 693
>TC215424 similar to UP|Q9MA04 (Q9MA04) F20B17.16, partial (26%)
Length = 1030
Score = 39.7 bits (91), Expect = 0.009
Identities = 31/98 (31%), Positives = 37/98 (37%), Gaps = 4/98 (4%)
Frame = +3
Query: 388 QMPPSYPYVPYSQH--PFFPPFYHQ--YPLPPGQPQVPVNAIAQQMKQQLPVQQQQNQQA 443
Q+PP+ Y QH P+ PP H YP PP P P A + Q
Sbjct: 48 QIPPNSNYHQNQQHHVPYAPPNPHHPHYPYPPPPPPPPPEA---------------SYQP 182
Query: 444 RPTFPPIPMLYAELLPTLLHRGHCTTRQGKPPPDPLPP 481
P PP PM Y + + Q PPP PL P
Sbjct: 183 PPPPPPAPMYYPS--------NNQYSNQPPPPPPPLSP 272
>TC228588 similar to UP|Q6NLV4 (Q6NLV4) At5g13480, partial (29%)
Length = 1178
Score = 37.4 bits (85), Expect = 0.044
Identities = 43/141 (30%), Positives = 56/141 (39%), Gaps = 5/141 (3%)
Frame = +1
Query: 345 AESSVNASKRYGNGHHKKKETEIGMVSAGAGQSMATVAPINAAQMPPSYPYVPY---SQH 401
AE S A + GN + T G + G ++ T+ + A MP S P + Q
Sbjct: 415 AEQSPVAGRTGGNFTIAEGPTTPGPFAPGLTRNEGTIPGVGVA-MPLSIPSLDMPQGEQK 591
Query: 402 PFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPVQQQQNQ-QARP-TFPPIPMLYAELLP 459
P PLPPG +NA QQ QQ P Q Q+Q QA P +PM +
Sbjct: 592 QPHPVSMGAPPLPPGPHPSLINANQQQPYQQNPQQMPQHQHQALPQQMGSLPM--PPNMQ 765
Query: 460 TLLHRGHCTTRQGKPPPDPLP 480
L H H PP +P
Sbjct: 766 QLQHPSHSPFPNMPRPPPQMP 828
>TC228334 similar to UP|Q9SW80 (Q9SW80) Bel1-like homeodomain 2
(AT4g36870/C7A10_490), partial (9%)
Length = 910
Score = 36.6 bits (83), Expect = 0.075
Identities = 20/49 (40%), Positives = 30/49 (60%), Gaps = 3/49 (6%)
Frame = +2
Query: 436 QQQQNQQAR---PTFPPIPMLYAELLPTLLHRGHCTTRQGKPPPDPLPP 481
QQQQN+QA+ P+ PPI L++ +L ++ + T+Q PP P PP
Sbjct: 191 QQQQNRQAKDPMPSMPPIATLHS-MLQ*IIDKASRKTKQRSPPHPPPPP 334
>BQ296385
Length = 399
Score = 36.6 bits (83), Expect = 0.075
Identities = 31/123 (25%), Positives = 41/123 (33%), Gaps = 10/123 (8%)
Frame = +2
Query: 373 GAGQSMATVAPINAAQM-------PPSYPYVPYSQHPFFPPFYHQYPLPPGQPQVPVNAI 425
G G + P N ++ PP P +P QHP PP H + P P ++
Sbjct: 5 GGGTKRRSFRPHNPGRLRLHRQIRPPRSPQIP--QHPILPPQIHSHSGPKPTKTNPGPSV 178
Query: 426 AQQMKQQLPVQQQQNQQARPTFPPIPMLYAELLPTLLHRGHCTTRQGKPPPD---PLPPR 482
Q + RP PP P+ R PPP PLPP
Sbjct: 179 GLQAQPSPLPPHPHRGHRRPLLPPFPL-----------------RPHGPPPQLRGPLPPP 307
Query: 483 FRS 485
R+
Sbjct: 308 RRA 316
>BI786384
Length = 421
Score = 35.8 bits (81), Expect = 0.13
Identities = 29/91 (31%), Positives = 43/91 (46%), Gaps = 8/91 (8%)
Frame = +2
Query: 526 PHVLDNPLPNHA--AVNMIEVCEEAPRLDVRNVATPLVPLHIKLCKASLFSHDHAK---C 580
P+V NPL NH AVN +E +R+VATP + L K + H K C
Sbjct: 2 PNVRTNPLANHGGGAVNAVESDRPHRSKPLRDVATPRRFIFEALQKGGVIPHSGCKEDSC 181
Query: 581 L---GCLHNPLGCYTVQDDIQSLMNDNFLTV 608
L G +H+ C V++ +Q +++ L V
Sbjct: 182 LLHSGEMHDMETCLEVEELLQRMIDQGRLEV 274
Score = 30.8 bits (68), Expect = 4.1
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +2
Query: 489 CDFHQGALGHDVEGCYALKYIVKKLIDQGKL 519
C H G + HD+E C ++ +++++IDQG+L
Sbjct: 179 CLLHSGEM-HDMETCLEVEELLQRMIDQGRL 268
>TC227291 weakly similar to UP|Q9SFY4 (Q9SFY4) T22C5.20, partial (7%)
Length = 1393
Score = 35.4 bits (80), Expect = 0.17
Identities = 34/114 (29%), Positives = 48/114 (41%), Gaps = 3/114 (2%)
Frame = +1
Query: 379 ATVAPINAAQMPPSYPY---VPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPV 435
A+V P+ Q P +PY VP S P PP LPP QP++P LP
Sbjct: 427 ASVTPLAQIQGTPMHPYNQQVPPSIMP--PPL---SSLPPPQPEMP---------PPLP- 561
Query: 436 QQQQNQQARPTFPPIPMLYAELLPTLLHRGHCTTRQGKPPPDPLPPRFRSDLKC 489
P+ PP+P + L+P L + PPP LP + +++C
Sbjct: 562 ---------PSPPPLPQVQPPLVPPL------PSSPPPPPPPQLPVQEPVNMEC 678
>TC227192 similar to UP|Q6L8U3 (Q6L8U3) Auxin response factor 1, partial
(14%)
Length = 875
Score = 34.7 bits (78), Expect = 0.28
Identities = 24/70 (34%), Positives = 33/70 (46%), Gaps = 2/70 (2%)
Frame = +3
Query: 414 PPGQPQVPVNAIAQQMKQQL--PVQQQQNQQARPTFPPIPMLYAELLPTLLHRGHCTTRQ 471
PP + N QQ+ QL +QQQQ Q R P+L ++LL + T +Q
Sbjct: 105 PPATQMLQQNPSEQQLHLQLLQKLQQQQQHQQRLLSTSTPLLLSQLL-----QQQNTHQQ 269
Query: 472 GKPPPDPLPP 481
+ P PLPP
Sbjct: 270 NQQLPQPLPP 299
>AW703629
Length = 421
Score = 34.7 bits (78), Expect = 0.28
Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 7/87 (8%)
Frame = +1
Query: 373 GAGQSMATVAPINAAQM-------PPSYPYVPYSQHPFFPPFYHQYPLPPGQPQVPVNAI 425
G G + P N ++ PP P +P QHP PP H + P P ++
Sbjct: 25 GGGTKRRSFRPHNPGRLRLHRQIRPPRSPQIP--QHPILPPQIHSHSGPKPTKTNPGPSV 198
Query: 426 AQQMKQQLPVQQQQNQQARPTFPPIPM 452
Q + RP PP P+
Sbjct: 199 GLQAQPSPLPPHPHRGHRRPLLPPFPL 279
>CA785470 similar to GP|28411852|dbj| P0700D12.25 {Oryza sativa (japonica
cultivar-group)}, partial (28%)
Length = 435
Score = 34.3 bits (77), Expect = 0.37
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 1/116 (0%)
Frame = +2
Query: 335 VRDGIIVFEKAESSVNASKRYGNGHHKKKETEIGMVSAGAGQSMATVAPINAAQMPPSYP 394
+ D + VF + S+N Y HH+ ++ +A A P ++ PS
Sbjct: 17 IPDLVFVFPSMDLSINTRTPYTLHHHRSAG*DVPAAAADDPPLPAGSTPHGPLRLLPSLV 196
Query: 395 Y-VPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPVQQQQNQQARPTFPP 449
P+ + H PLP PQ P + + ++ +QQ Q P+ PP
Sbjct: 197 LEAPHRR-------LHPLPLPASLPQNPRHVPHKHNNVEILEKQQSQQHPPPSAPP 343
>TC224791 similar to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
partial (40%)
Length = 607
Score = 33.9 bits (76), Expect = 0.48
Identities = 26/92 (28%), Positives = 32/92 (34%)
Frame = +3
Query: 390 PPSYPYVPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPVQQQQNQQARPTFPP 449
PP Y + P P PP+Y++ P PP P P + P+ PP
Sbjct: 51 PPYYYHSPSPSPP--PPYYYKSPPPPSPSPPP------------PYYYKSPPPPSPS-PP 185
Query: 450 IPMLYAELLPTLLHRGHCTTRQGKPPPDPLPP 481
P Y P H PPP P PP
Sbjct: 186 PPYYYHSPPPPKEHVHPPYYYHSPPPPSPSPP 281
>TC215827 similar to GB|AAP37794.1|30725544|BT008435 At3g63460 {Arabidopsis
thaliana;} , partial (18%)
Length = 1713
Score = 33.9 bits (76), Expect = 0.48
Identities = 39/113 (34%), Positives = 46/113 (40%), Gaps = 15/113 (13%)
Frame = +1
Query: 384 INAAQMPPSYPYVPYSQHPFFPPFYHQY--PLPPGQPQVPVNAIAQQMKQ--QLPVQQQQ 439
++ Q P SY Q PF P + Y P PP QPQ P + Q Q Q P
Sbjct: 319 VSGIQYPDSY------QQPFDPRYGRGYGAPTPPQQPQQPNLFVPPQTTQVVQTPQPTFS 480
Query: 440 NQQARP----TFPP--IPML-----YAELLPTLLHRGHCTTRQGKPPPDPLPP 481
N P TF P PML Y + PTL + + TT PP P PP
Sbjct: 481 NTAVAPPPLRTFDPQTPPMLRNVEQYQQ--PTLGSQLYNTT---NPPYQPTPP 624
>TC213885 weakly similar to UP|Q9VUB7 (Q9VUB7) CG32133-PA, partial (4%)
Length = 540
Score = 33.5 bits (75), Expect = 0.63
Identities = 27/87 (31%), Positives = 38/87 (43%)
Frame = +1
Query: 27 AAQEQSATAIPIATTIPMTTSMLPTASTDARFAMPAGFPYGLPPFFTPSTAAGTSGTANN 86
A + +AT+ +ATT T+ T S+ A A A + +T A T+ A
Sbjct: 28 ADAKPTATSSAVATTAAATSHAATTTSSAA--AAAAASSAATAAATSSATTAATAPAAAA 201
Query: 87 VLIPATNAASINATLPQTTAAVTEPLV 113
PAT AA+ +T P TTA V
Sbjct: 202 SATPATAAAASTSTTPTTTATAAASAV 282
Score = 31.2 bits (69), Expect = 3.1
Identities = 28/95 (29%), Positives = 37/95 (38%)
Frame = +2
Query: 388 QMPPSYPYVPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPVQQQQNQQARPTF 447
QM ++P Q P Q LP Q Q + + QQ QQLP QQQ Q +
Sbjct: 29 QMQNQQQHLPQLQQQQQLPHMQQQQLPQLQQQQQLPQLQQQ--QQLPQLQQQQQLQQQQL 202
Query: 448 PPIPMLYAELLPTLLHRGHCTTRQGKPPPDPLPPR 482
P + + LP L +Q P L P+
Sbjct: 203 PQLQQ--QQQLPQLQQLPQLQQQQQLPQLQQLQPQ 301
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.332 0.143 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,049,566
Number of Sequences: 63676
Number of extensions: 1117704
Number of successful extensions: 9067
Number of sequences better than 10.0: 122
Number of HSP's better than 10.0 without gapping: 8093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8706
length of query: 1322
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1213
effective length of database: 5,698,948
effective search space: 6912823924
effective search space used: 6912823924
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 65 (29.6 bits)
Medicago: description of AC144930.1