TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144929.16 + phase: 0 
         (143 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CO984500                                                               96  8e-21
TC228030 similar to UP|Q8LPS4 (Q8LPS4) At3g06670/T8E24.10, parti...    28  1.1
TC207848 homologue to UP|Q84RS0 (Q84RS0) ZR4 protein (Fragment),...    27  3.3
BU579083                                                               27  4.3
CA800962                                                               26  5.7
TC207505                                                               26  5.7
TC218821 weakly similar to UP|Q7PBB4 (Q7PBB4) NADH dehydrogenase...    26  7.4
TC216752 similar to UP|Q8LA49 (Q8LA49) Globulin-like protein, pa...    25  9.7
TC223305 similar to GB|AAQ89640.1|37202050|BT010618 At4g09550 {A...    25  9.7

>CO984500 
          Length = 758

 Score = 95.5 bits (236), Expect = 8e-21
 Identities = 62/124 (50%), Positives = 76/124 (61%), Gaps = 21/124 (16%)
 Frame = -1

Query: 37  SFRSNVTLSRKKTDGLETEDLGNKVICPLQEYLLGSSFEIREKTEVRIERASVR------ 90
           S+ S +TLS K+ DG + ED  NK +CPLQ YLLGSSFE+ E  EVR ERAS+       
Sbjct: 755 SYVSIITLSEKEIDGPKAEDYRNKAVCPLQGYLLGSSFELPETKEVRKERASLAELLYKT 576

Query: 91  --------------ETQVKQGRRS-ALHIIKKMSNMVLSSSKSCNTYGNTADHATSTNEK 135
                         ETQVK+  +S A+HI++K+   V SSSKSCNT  N AD A STN+K
Sbjct: 575 KSTSQDCIDTGIQGETQVKRTPKSAAMHIMRKILKRVHSSSKSCNTSRNDADSA-STNKK 399

Query: 136 LCKV 139
           L KV
Sbjct: 398 LQKV 387


>TC228030 similar to UP|Q8LPS4 (Q8LPS4) At3g06670/T8E24.10, partial (12%)
          Length = 1344

 Score = 28.5 bits (62), Expect = 1.1
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 12  KLISYELEKFVEADEECFYESSGRISFRSNVTLS 45
           K +S +LE F   D  CF+ SSG +SF  N   S
Sbjct: 378 KTLSLDLEFF---DNFCFFTSSGSLSFEGNFLFS 286


>TC207848 homologue to UP|Q84RS0 (Q84RS0) ZR4 protein (Fragment), partial
           (92%)
          Length = 1403

 Score = 26.9 bits (58), Expect = 3.3
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +1

Query: 11  LKLISYELEKFVEADEECFY-ESSGRISFRSNVTLSRKKTDGLETEDLGN 59
           LK + +  ++F E   E ++ E+ GR+  + NV +  K + G+ +EDL +
Sbjct: 862 LKRVRFSRKRFSEKQAEQWWAENRGRVYEQYNVRMIDKSSVGVGSEDLAH 1011


>BU579083 
          Length = 376

 Score = 26.6 bits (57), Expect = 4.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 12  KLISYELEKFVEADEECFYESSGRISFRSNVTLS 45
           K +S +LE F   D  CF+ SSG +S   N   S
Sbjct: 369 KTLSLDLEFF---DNFCFFSSSGSLSLEGNFLFS 277


>CA800962 
          Length = 409

 Score = 26.2 bits (56), Expect = 5.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 2   KDAAVTETQLKLISYELEKFVEAD 25
           K+  VTE  LKLI+ ELEK + A+
Sbjct: 333 KEDEVTENDLKLINDELEKVLGAE 404


>TC207505 
          Length = 1191

 Score = 26.2 bits (56), Expect = 5.7
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
 Frame = -2

Query: 98  RRSALHIIKKMSNMV-----LSSSKSCNTYGNTADHATSTNEKLCKVGPY 142
           R   LH     SN        S S S N   NT   +  T + LCK+ PY
Sbjct: 533 RTRLLHFAPTSSNSYGSIPQASVSSSSNKLDNTEQESGPTCKTLCKLSPY 384


>TC218821 weakly similar to UP|Q7PBB4 (Q7PBB4) NADH dehydrogenase I chain N,
           partial (8%)
          Length = 1164

 Score = 25.8 bits (55), Expect = 7.4
 Identities = 28/102 (27%), Positives = 44/102 (42%)
 Frame = -3

Query: 20  KFVEADEECFYESSGRISFRSNVTLSRKKTDGLETEDLGNKVICPLQEYLLGSSFEIREK 79
           K VE D  C Y +   ISFR    L  KK   L       K IC      L +S + R K
Sbjct: 892 KVVEKDASCLYHNVCMISFRKK--LIYKKGTIL-------KFIC------LFASSQTRLK 758

Query: 80  TEVRIERASVRETQVKQGRRSALHIIKKMSNMVLSSSKSCNT 121
           T + I    +++ + ++ R     +  K+ +++LS+     T
Sbjct: 757 T*INIWLLILQQNKQERRRLCVAKLH*KLEDIILSNKNKLLT 632


>TC216752 similar to UP|Q8LA49 (Q8LA49) Globulin-like protein, partial (53%)
          Length = 748

 Score = 25.4 bits (54), Expect = 9.7
 Identities = 12/27 (44%), Positives = 16/27 (58%)
 Frame = -1

Query: 106 KKMSNMVLSSSKSCNTYGNTADHATST 132
           KKM++ VL    SC+T G+T   A  T
Sbjct: 577 KKMASAVLFERNSCSTSGSTLKAACKT 497


>TC223305 similar to GB|AAQ89640.1|37202050|BT010618 At4g09550 {Arabidopsis
           thaliana;} , partial (82%)
          Length = 559

 Score = 25.4 bits (54), Expect = 9.7
 Identities = 11/36 (30%), Positives = 22/36 (60%)
 Frame = -3

Query: 18  LEKFVEADEECFYESSGRISFRSNVTLSRKKTDGLE 53
           L +FV+  + CF   +G+  F S ++L+ +  +G+E
Sbjct: 164 LVQFVQPPDPCFKLRTGQSMFSSTISLN*RGHNGIE 57


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.312    0.128    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,109,421
Number of Sequences: 63676
Number of extensions: 50194
Number of successful extensions: 227
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of query: 143
length of database: 12,639,632
effective HSP length: 88
effective length of query: 55
effective length of database: 7,036,144
effective search space: 386987920
effective search space used: 386987920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)