TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC142094.8 - phase: 0 /pseudo
         (82 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC208586 similar to UP|Q43323 (Q43323) Membrane protein, partial...    49  3e-07
TC219980                                                               47  2e-06
TC222960 similar to UP|Q43323 (Q43323) Membrane protein, partial...    45  5e-06
BE609499                                                               39  4e-04
TC206040 similar to UP|Q9XFB4 (Q9XFB4) PR1a precursor, partial (...    30  0.28
TC215811 similar to UP|O49529 (O49529) Predicted protein, partia...    28  1.1
BI970115                                                               27  2.4
BQ299081 similar to GP|2827699|emb predicted protein {Arabidopsi...    26  4.1
TC206395                                                               26  4.1
TC230571 similar to UP|Q41645 (Q41645) Extensin (Fragment), part...    25  5.4
TC206396                                                               25  5.4
TC224247 similar to UP|Q9FF84 (Q9FF84) ATP-dependent RNA helicas...    25  7.0
BM085540                                                               25  7.0
TC217768                                                               25  7.0
CO985158                                                               25  7.0
TC211461 weakly similar to UP|DPD4_SCHPO (O59835) DNA polymerase...    25  9.1
BM525766 SP|P17817|PROC Pyrroline-5-carboxylate reductase (EC 1....    25  9.1
TC230848 similar to UP|Q8LPT2 (Q8LPT2) At1g10410/F14N23_31, part...    25  9.1
TC220904 homologue to GB|AAS47665.1|44681450|BT011659 At5g03110 ...    25  9.1
TC215642 similar to UP|Q84MC1 (Q84MC1) At4g31290, partial (80%)        25  9.1

>TC208586 similar to UP|Q43323 (Q43323) Membrane protein, partial (66%)
          Length = 893

 Score = 49.3 bits (116), Expect = 3e-07
 Identities = 24/46 (52%), Positives = 31/46 (67%)
 Frame = +2

Query: 11  VFNLTIGIVPIVNNFGLIGGLIPGFLLGFVLLCKKDPFVLPDQKLH 56
           V NL IG++P V+NF  IGG + GFLLGF+LL +     L  Q+LH
Sbjct: 443 VINLAIGMLPHVDNFAHIGGFLSGFLLGFILLLRPQFGWLEQQRLH 580


>TC219980 
          Length = 1021

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 21/41 (51%), Positives = 30/41 (72%)
 Frame = +3

Query: 4   LSIGMVPVFNLTIGIVPIVNNFGLIGGLIPGFLLGFVLLCK 44
           L++ ++ V NL +GI+P V+NF  IGG + GFLLGFV L +
Sbjct: 273 LTLVIIIVINLAVGILPHVDNFAHIGGFLTGFLLGFVFLIR 395


>TC222960 similar to UP|Q43323 (Q43323) Membrane protein, partial (52%)
          Length = 731

 Score = 45.4 bits (106), Expect = 5e-06
 Identities = 21/39 (53%), Positives = 30/39 (76%)
 Frame = +1

Query: 4   LSIGMVPVFNLTIGIVPIVNNFGLIGGLIPGFLLGFVLL 42
           +++ ++ V NL IGI+P V+NF  IGG + GFLLGF+LL
Sbjct: 190 ITLLVIIVINLGIGILPHVDNFAHIGGFLVGFLLGFILL 306


>BE609499 
          Length = 442

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = +2

Query: 6   IGMVPVFNLTIGIVPIVNNFGLIGGLIPGFLLGFVLLCKKDP 47
           +G + VF LT GI+P V     +GGL+ GFL+GFV + +  P
Sbjct: 167 LGFLLVFILTGGILPPVGGSAHMGGLLAGFLVGFVFVIRAPP 292


>TC206040 similar to UP|Q9XFB4 (Q9XFB4) PR1a precursor, partial (90%)
          Length = 772

 Score = 29.6 bits (65), Expect = 0.28
 Identities = 18/61 (29%), Positives = 30/61 (48%), Gaps = 7/61 (11%)
 Frame = -3

Query: 18  IVPIVNNFGLIGGLIPGFLLGFVLLCKKDPFVLPDQKLHKR-------CLPIICFILLST 70
           I+P++     +  L   F L  ++LCK    V+P Q L+         C+ +IC+ +LS 
Sbjct: 338 ILPVLATTTRVDQLTITFTLISIVLCKSSNRVIPSQVLNTHL*SCSVVCIDVICW*VLSI 159

Query: 71  G 71
           G
Sbjct: 158 G 156


>TC215811 similar to UP|O49529 (O49529) Predicted protein, partial (5%)
          Length = 629

 Score = 27.7 bits (60), Expect = 1.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 35 FLLGFVLLCKKDPFVLPDQKLHKRCLPIICF 65
          FL  F  +C  + +   +  LH+RC+P I F
Sbjct: 55 FLSYFFWVCMMNMYAYSNTVLHRRCIPFISF 147


>BI970115 
          Length = 449

 Score = 26.6 bits (57), Expect = 2.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 12  FNLTIGIVPIVNNFGLIGGLIPGFLLGFVLLCKKDPFVLPDQK 54
           ++L  G VPI      +GG++       V+  K DPF+ P+++
Sbjct: 377 WSLLTGPVPI------LGGVVVAIAAANVIFVKNDPFLQPEER 267


>BQ299081 similar to GP|2827699|emb predicted protein {Arabidopsis
          thaliana}, partial (5%)
          Length = 422

 Score = 25.8 bits (55), Expect = 4.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 39 FVLLCKKDPFVLPDQKLHKRCLPIICF 65
          F  +C  + +   +  LH+RC+P I F
Sbjct: 2  FFWVCMMNMYAYSNTVLHRRCIPFISF 82


>TC206395 
          Length = 522

 Score = 25.8 bits (55), Expect = 4.1
 Identities = 8/31 (25%), Positives = 19/31 (60%)
 Frame = +2

Query: 27  LIGGLIPGFLLGFVLLCKKDPFVLPDQKLHK 57
           ++GG++       V+  K DPF+ P+++ ++
Sbjct: 128 ILGGVVVAIAAANVIFVKNDPFLKPEERKYE 220


>TC230571 similar to UP|Q41645 (Q41645) Extensin (Fragment), partial (7%)
          Length = 667

 Score = 25.4 bits (54), Expect = 5.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 30 GLIPGFLLGFVLLCKKDPFV 49
          GL+PG L+G +LL  + PF+
Sbjct: 60 GLLPGTLMGVLLLLSRLPFL 1


>TC206396 
          Length = 795

 Score = 25.4 bits (54), Expect = 5.4
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 27  LIGGLIPGFLLGFVLLCKKDPFVLPDQK 54
           ++GG++       V+  K DPF+ P+++
Sbjct: 398 ILGGVVVAIAAANVIFVKNDPFLQPEER 481


>TC224247 similar to UP|Q9FF84 (Q9FF84) ATP-dependent RNA helicase A-like
           protein, partial (7%)
          Length = 706

 Score = 25.0 bits (53), Expect = 7.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 16  IGIVPIVNNFGLIGGLIPGFLLGFV 40
           IGI    + + +IG LIP F LGF+
Sbjct: 392 IGI*VTFHQYMVIGELIPSFHLGFI 466


>BM085540 
          Length = 391

 Score = 25.0 bits (53), Expect = 7.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 34  GFLLGFVLLCKKDPFVLPDQKLHKRC 59
           G+ L  VLLC+K P  LP + L   C
Sbjct: 341 GYELELVLLCRKGPLELP*RGLLGTC 264


>TC217768 
          Length = 1516

 Score = 25.0 bits (53), Expect = 7.0
 Identities = 17/55 (30%), Positives = 23/55 (40%), Gaps = 6/55 (10%)
 Frame = +2

Query: 33   PGFLLGFVLLCKKDPFVLPDQKLHKRCLPII------CFILLSTGWTGVLTKGSE 81
            P F+ GF   C K P      K  ++  P +      C    STGW G  +KG +
Sbjct: 1037 PEFISGFPARCPKWP------KFSRKLSPAMEFRNGWCAF*TSTGWYGCGSKGGQ 1183


>CO985158 
          Length = 780

 Score = 25.0 bits (53), Expect = 7.0
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +3

Query: 40  VLLCKKDPFVLPDQKLHKRCLPIIC 64
           ++ C++D F+   Q+++   LP++C
Sbjct: 135 LICCRRDSFLFSKQRIYIFILPLLC 209


>TC211461 weakly similar to UP|DPD4_SCHPO (O59835) DNA polymerase delta
           subunit 4 , partial (15%)
          Length = 459

 Score = 24.6 bits (52), Expect = 9.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 28  IGGLIPGFLLGFVLLCKKDPFVLPD 52
           IG  +  FL+  V  C   PF+ PD
Sbjct: 117 IGDFLEDFLVAVVFFCL*KPFMFPD 43


>BM525766 SP|P17817|PROC Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
           (P5CR) (P5C reductase). [Soybean] {Glycine max}, partial
           (4%)
          Length = 428

 Score = 24.6 bits (52), Expect = 9.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 54  KLHKRCLPIICFILLSTGW 72
           KLH  C   +CF+L   GW
Sbjct: 239 KLHMICYNSLCFVLHYEGW 295


>TC230848 similar to UP|Q8LPT2 (Q8LPT2) At1g10410/F14N23_31, partial (24%)
          Length = 1400

 Score = 24.6 bits (52), Expect = 9.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 27  LIGGLIPGFLLGFVLLCKKDPFVLPD 52
           + G  I  FL+  V  C+  PF+ PD
Sbjct: 142 MAGERIGDFLVAMVFFCR*KPFMFPD 65


>TC220904 homologue to GB|AAS47665.1|44681450|BT011659 At5g03110 {Arabidopsis
           thaliana;} , partial (7%)
          Length = 708

 Score = 24.6 bits (52), Expect = 9.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 24  NFGLIGGLIPGFLLGFVLLC 43
           NF +  GL  GF+ GF+LLC
Sbjct: 220 NFSVRPGLEMGFVGGFMLLC 161


>TC215642 similar to UP|Q84MC1 (Q84MC1) At4g31290, partial (80%)
          Length = 1146

 Score = 24.6 bits (52), Expect = 9.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 28  IGGLIPGFLLGFVLLCKKDP 47
           IGG   G+LLG  LLC + P
Sbjct: 303 IGGERRGYLLGSCLLCSRRP 362


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.331    0.154    0.501 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,700,352
Number of Sequences: 63676
Number of extensions: 75599
Number of successful extensions: 472
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of query: 82
length of database: 12,639,632
effective HSP length: 58
effective length of query: 24
effective length of database: 8,946,424
effective search space: 214714176
effective search space used: 214714176
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)