BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141863.8 - phase: 0
(271 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC205085 similar to UP|PSB5_SPIOL (O24361) Proteasome subunit be... 506 e-144
TC205084 similar to UP|PSB5_SPIOL (O24361) Proteasome subunit be... 504 e-143
AI965339 152 2e-60
TC225073 homologue to UP|O23716 (O23716) Multicatalytic endopept... 96 1e-20
AW310028 weakly similar to GP|3980264|emb| 20S proteasome beta s... 84 5e-17
TC225200 similar to UP|O23709 (O23709) 20S proteasome beta subun... 80 1e-15
TC227911 UP|PSA5_SOYBN (Q9M4T8) Proteasome subunit alpha type 5 ... 71 6e-13
TC218552 UP|PSA5_SOYBN (Q9M4T8) Proteasome subunit alpha type 5 ... 70 1e-12
TC215500 homologue to UP|Q8VZC4 (Q8VZC4) Proteasome subunit, com... 64 9e-11
TC215498 homologue to UP|Q8VZC4 (Q8VZC4) Proteasome subunit, com... 64 9e-11
TC225092 similar to UP|O23716 (O23716) Multicatalytic endopeptid... 53 1e-07
TC226173 similar to UP|PS21_ARATH (O23714) Proteasome subunit be... 53 2e-07
TC225502 homologue to UP|PSA2_ARATH (O23708) Proteasome subunit ... 50 1e-06
TC225504 homologue to UP|PSA2_ARATH (O23708) Proteasome subunit ... 49 2e-06
TC218551 homologue to UP|PSA5_SOYBN (Q9M4T8) Proteasome subunit ... 49 3e-06
TC226174 similar to UP|PS21_ARATH (O23714) Proteasome subunit be... 48 5e-06
TC225189 homologue to UP|O23709 (O23709) 20S proteasome beta sub... 45 5e-05
TC225505 similar to UP|PSA2_ARATH (O23708) Proteasome subunit al... 39 0.002
TC205425 similar to UP|O23718 (O23718) 20S proteasome beta subun... 38 0.006
TC204281 similar to UP|Q8H1Y2 (Q8H1Y2) 20S proteasome alpha 6 su... 38 0.006
>TC205085 similar to UP|PSB5_SPIOL (O24361) Proteasome subunit beta type 5
precursor (20S proteasome subunit E) (Proteasome
epsilon chain) , partial (90%)
Length = 1152
Score = 506 bits (1304), Expect = e-144
Identities = 249/269 (92%), Positives = 257/269 (94%)
Frame = +1
Query: 2 LDTTALESFPSLISHGINVAGEISAPPSFQLPNSNDFDGFVKETIQMVKPAKGTTTLAFI 61
LDTT LESFP+L++ +V GE+SA PSF LPNSNDFDGFVKE IQMVKPAKGTTTLAFI
Sbjct: 61 LDTTGLESFPTLLAPQNDVVGELSAAPSFDLPNSNDFDGFVKEAIQMVKPAKGTTTLAFI 240
Query: 62 FKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHE 121
FKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHE
Sbjct: 241 FKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHE 420
Query: 122 LANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGNRFS 181
LANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKG RFS
Sbjct: 421 LANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFS 600
Query: 182 VGSGSPYAYGVLDSGYKYDMSVEEASELARRAIYHATFRDGASGGVASVYYVGPTGWKKL 241
VGSGSPYAYGVLDSGY+YD+SVEEA+ELARRAIYHATFRDGASGGVASVYYVGP GWKKL
Sbjct: 601 VGSGSPYAYGVLDSGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPNGWKKL 780
Query: 242 SGDDVGELHYHYNPVTPSTVEQEMVEAAG 270
SGDDVGELHYHY PVTPSTVEQEMVEA G
Sbjct: 781 SGDDVGELHYHYYPVTPSTVEQEMVEATG 867
>TC205084 similar to UP|PSB5_SPIOL (O24361) Proteasome subunit beta type 5
precursor (20S proteasome subunit E) (Proteasome
epsilon chain) , partial (90%)
Length = 1364
Score = 504 bits (1299), Expect = e-143
Identities = 248/269 (92%), Positives = 258/269 (95%)
Frame = +3
Query: 2 LDTTALESFPSLISHGINVAGEISAPPSFQLPNSNDFDGFVKETIQMVKPAKGTTTLAFI 61
LDTT+LESFP+LI+ +VAGE+SA P F LPNSNDFDGF+K+ IQMVKPAKGTTTLAFI
Sbjct: 132 LDTTSLESFPTLIAPQNDVAGELSAAPFFDLPNSNDFDGFLKDAIQMVKPAKGTTTLAFI 311
Query: 62 FKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHE 121
FKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHE
Sbjct: 312 FKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHE 491
Query: 122 LANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGNRFS 181
LANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKG RFS
Sbjct: 492 LANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFS 671
Query: 182 VGSGSPYAYGVLDSGYKYDMSVEEASELARRAIYHATFRDGASGGVASVYYVGPTGWKKL 241
VGSGSPYAYGVLDSGY+YD+SVEEA+ELARRAIYHATFRDGASGGVASVYYVGP GWKKL
Sbjct: 672 VGSGSPYAYGVLDSGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPNGWKKL 851
Query: 242 SGDDVGELHYHYNPVTPSTVEQEMVEAAG 270
SGDDVGELHYHY PVTPSTVEQEMVEA G
Sbjct: 852 SGDDVGELHYHYYPVTPSTVEQEMVEATG 938
>AI965339
Length = 418
Score = 152 bits (385), Expect(2) = 2e-60
Identities = 72/73 (98%), Positives = 72/73 (98%)
Frame = +1
Query: 98 TMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAG 157
T AGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAG
Sbjct: 1 TRAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAG 180
Query: 158 WDETGPGLYYVDS 170
WDETGPGLYYVDS
Sbjct: 181 WDETGPGLYYVDS 219
Score = 97.4 bits (241), Expect(2) = 2e-60
Identities = 47/58 (81%), Positives = 52/58 (89%)
Frame = +3
Query: 178 NRFSVGSGSPYAYGVLDSGYKYDMSVEEASELARRAIYHATFRDGASGGVASVYYVGP 235
+R S+G P AYGVLDSGY+YD+SVEEA+ELARRA YHATFRDGASGGVASVYYVGP
Sbjct: 240 DRXSLGYPHPPAYGVLDSGYRYDLSVEEAAELARRANYHATFRDGASGGVASVYYVGP 413
>TC225073 homologue to UP|O23716 (O23716) Multicatalytic endopeptidase
complex, proteasome, beta subunit (AT4g31300/F8F16_120)
(20S proteasome subunit PBA1) , partial (93%)
Length = 1080
Score = 96.3 bits (238), Expect = 1e-20
Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 1/185 (0%)
Frame = +1
Query: 54 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 113
GTT + + GV++ ADSR S G Y+++++ KI ++ + +G AAD Q +
Sbjct: 169 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYV 348
Query: 114 GIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGG 173
H + + +V A+ L+ + Y+ + L G ++ GWD+ G Y GG
Sbjct: 349 RYFLHQHTIQLGQPATVKVAANLVRLLAYNNKNF-LQTGLIVGGWDKYEGGQIYGVPLGG 525
Query: 174 RLKGNRFSVG-SGSPYAYGVLDSGYKYDMSVEEASELARRAIYHATFRDGASGGVASVYY 232
+ F++G SGS Y YG D +K M+ +EA +L ++A+ A RDGASGGV
Sbjct: 526 TIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAVSLAIARDGASGGVVRTVI 705
Query: 233 VGPTG 237
+ G
Sbjct: 706 INSEG 720
>AW310028 weakly similar to GP|3980264|emb| 20S proteasome beta subunit
{Cicer arietinum}, partial (8%)
Length = 334
Score = 84.3 bits (207), Expect = 5e-17
Identities = 48/112 (42%), Positives = 67/112 (58%)
Frame = -1
Query: 159 DETGPGLYYVDSEGGRLKGNRFSVGSGSPYAYGVLDSGYKYDMSVEEASELARRAIYHAT 218
D G G Y +D + L+ FS G GSPY Y V +G ++ S +E + AR AI H+T
Sbjct: 334 DAPGSGPYLLDRDRATLQALAFSPGFGSPYDYRV*HTGPRHA*SDQERAYHARLAINHST 155
Query: 219 FRDGASGGVASVYYVGPTGWKKLSGDDVGELHYHYNPVTPSTVEQEMVEAAG 270
+RDGASGG + K+ SG+++ H+HY+PVTPS V Q+M+EA G
Sbjct: 154 YRDGASGGPVP-FSTWFKCMKESSGNELWRFHFHYSPVTPSPVVQQMLEAIG 2
>TC225200 similar to UP|O23709 (O23709) 20S proteasome beta subunit PBB2 ,
partial (95%)
Length = 1175
Score = 80.1 bits (196), Expect = 1e-15
Identities = 56/177 (31%), Positives = 89/177 (49%)
Frame = +1
Query: 54 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 113
GTT + +F++GV++ AD+RA+ G ++ ++ +KI + P + AG AAD + +
Sbjct: 229 GTTIVGLVFQDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 408
Query: 114 GIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGG 173
+ +LH R V A LL L++Y+G +S ++ G D TGP L+ + G
Sbjct: 409 SSQLQLHRYHTGRESRVVTALTLLKKHLFNYQG-HVSAALVLGGVDITGPHLHTIYPHGS 585
Query: 174 RLKGNRFSVGSGSPYAYGVLDSGYKYDMSVEEASELARRAIYHATFRDGASGGVASV 230
++GSGS A V +S YK +S +E +L AI F D SG V
Sbjct: 586 TDTLPFATMGSGSLAAMSVFESKYKESLSRDEGIKLVVEAICAGIFNDLGSGSNVDV 756
>TC227911 UP|PSA5_SOYBN (Q9M4T8) Proteasome subunit alpha type 5 (20S
proteasome alpha subunit E) (20S proteasome subunit
alpha-5) , complete
Length = 1043
Score = 70.9 bits (172), Expect = 6e-13
Identities = 51/177 (28%), Positives = 89/177 (49%), Gaps = 8/177 (4%)
Frame = +1
Query: 42 VKETIQMVKPAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAG 101
V+ I+ +K G+T + KEGV++A + R + + SV+KI+EI+ ++ M+G
Sbjct: 160 VEYAIEAIK--LGSTAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSG 330
Query: 102 GAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMG--------LSVGT 153
AD + + ++ + H + ++V ++ L ++ + G G V
Sbjct: 331 LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRF-GEGDEESMSRPFGVSL 507
Query: 154 MIAGWDETGPGLYYVDSEGGRLKGNRFSVGSGSPYAYGVLDSGYKYDMSVEEASELA 210
+IAG DE GP LYY D G + N ++GSGS A L Y D++++EA +A
Sbjct: 508 LIAGHDENGPSLYYTDPSGTFWQCNGKAIGSGSEGADSSLQEQYNKDLTLQEAETIA 678
>TC218552 UP|PSA5_SOYBN (Q9M4T8) Proteasome subunit alpha type 5 (20S
proteasome alpha subunit E) (20S proteasome subunit
alpha-5) , complete
Length = 1031
Score = 69.7 bits (169), Expect = 1e-12
Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 8/177 (4%)
Frame = +3
Query: 42 VKETIQMVKPAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAG 101
V+ I+ +K G+T + KEGV++A + R + + SV+KI+EI+ ++ M+G
Sbjct: 192 VEYAIEAIK--LGSTAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSG 362
Query: 102 GAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMG--------LSVGT 153
AD + + ++ + H + ++V ++ L ++ + G G V
Sbjct: 363 LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRF-GEGDEESMSRPFGVSL 539
Query: 154 MIAGWDETGPGLYYVDSEGGRLKGNRFSVGSGSPYAYGVLDSGYKYDMSVEEASELA 210
+IAG DE GP LYY D G + N ++GSGS A L + D++++EA +A
Sbjct: 540 LIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDLTLQEAETIA 710
>TC215500 homologue to UP|Q8VZC4 (Q8VZC4) Proteasome subunit, complete
Length = 975
Score = 63.5 bits (153), Expect = 9e-11
Identities = 52/189 (27%), Positives = 90/189 (47%), Gaps = 2/189 (1%)
Frame = +1
Query: 54 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 113
G+ +A + K +A+D R + + ++I +I+ + ++G A D Q ++ L
Sbjct: 115 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDKLFIGLSGLATDAQTLYQRL 294
Query: 114 GIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAG-WDETGPGLYYVDSEG 172
+ +L++L +R + + L++ ILY R +IAG D+ P + +D+ G
Sbjct: 295 LFRHKLYQLREERDMKPQTFASLVSAILYEKRFGPYFCQPVIAGLGDDDKPFICTMDAIG 474
Query: 173 GRLKGNRFSV-GSGSPYAYGVLDSGYKYDMSVEEASELARRAIYHATFRDGASGGVASVY 231
+ F V G+ S YG +S +K DM EE E +A+ + RD SG VY
Sbjct: 475 AKELAKDFVVAGTASESLYGACESMFKPDMEPEELFETISQALLSSVDRDCLSGWGGHVY 654
Query: 232 YVGPTGWKK 240
V PT K+
Sbjct: 655 VVTPTEVKE 681
>TC215498 homologue to UP|Q8VZC4 (Q8VZC4) Proteasome subunit, complete
Length = 967
Score = 63.5 bits (153), Expect = 9e-11
Identities = 51/189 (26%), Positives = 89/189 (46%), Gaps = 2/189 (1%)
Frame = +1
Query: 54 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 113
G+ +A + K +A+D R + + ++I +I+ + ++G A D Q ++ L
Sbjct: 103 GSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDKLFIALSGLATDAQTLYQRL 282
Query: 114 GIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAG-WDETGPGLYYVDSEG 172
+ +L++L +R + + L++ +LY R +IAG DE P + +D G
Sbjct: 283 VFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLGDEDKPFICTMDCLG 462
Query: 173 GRLKGNRFSV-GSGSPYAYGVLDSGYKYDMSVEEASELARRAIYHATFRDGASGGVASVY 231
+ F V G+ S YG ++ +K DM EE E +A+ + RD SG VY
Sbjct: 463 AKELAKDFVVSGTASESLYGACEAMFKPDMEPEELFETISQALLSSVDRDCLSGWGGHVY 642
Query: 232 YVGPTGWKK 240
V PT K+
Sbjct: 643 VVTPTEVKE 669
>TC225092 similar to UP|O23716 (O23716) Multicatalytic endopeptidase complex,
proteasome, beta subunit (AT4g31300/F8F16_120) (20S
proteasome subunit PBA1) , partial (47%)
Length = 609
Score = 53.1 bits (126), Expect = 1e-07
Identities = 31/87 (35%), Positives = 44/87 (49%), Gaps = 3/87 (3%)
Frame = +1
Query: 172 GGRLKGNRFSVG-SGSPYAYGVLDSGYKYDMSVEEASELARRAIYHATFRDGASGGVASV 230
GG + F++G SGS Y YG D +K M+ +EA +L ++A+ A RDGASGGV
Sbjct: 46 GGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAVSLAIARDGASGGVVRT 225
Query: 231 YYVGPTGWKK--LSGDDVGELHYHYNP 255
+ G + GD + H P
Sbjct: 226 VIINSEGVTRNFYPGDQLPLWHEEMEP 306
>TC226173 similar to UP|PS21_ARATH (O23714) Proteasome subunit beta type 2-1
(20S proteasome alpha subunit D1) , partial (98%)
Length = 930
Score = 52.8 bits (125), Expect = 2e-07
Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
Frame = +3
Query: 67 MVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKR 126
+V ADS A + + KI+ ++ + L +G D + + L++ N
Sbjct: 114 IVVADSSAVHSILVHKSNEDKIMLLDSHKLIAASGEPGDRVQFTEYIQKNVALYQFRNGI 293
Query: 127 RISVTGASKLL-ANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGNRFSVGS 184
++ A+ + + R SV ++AG+D ETGP LYY+D K + + G
Sbjct: 294 PLTTAAAANFTRGELATALRKNPYSVNILLAGYDKETGPELYYIDYIATLHKLEKGAFGY 473
Query: 185 GSPYAYGVLDSGYKYDMSVEEASELARRAI 214
GS ++ ++D Y MSVEEA +L + I
Sbjct: 474 GSYFSLSMMDRHYHSGMSVEEAVDLVDKCI 563
>TC225502 homologue to UP|PSA2_ARATH (O23708) Proteasome subunit alpha type 2
(20S proteasome alpha subunit B) , complete
Length = 1114
Score = 49.7 bits (117), Expect = 1e-06
Identities = 46/204 (22%), Positives = 81/204 (39%), Gaps = 4/204 (1%)
Frame = +1
Query: 29 SFQLPNSNDFDGFVKETIQMVKPAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKI 88
SF L + V+ + G T+L GV++A + + + SV+KI
Sbjct: 106 SFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLP-SILVDEASVQKI 282
Query: 89 IEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMG 148
+ P + +G D + R + + K I VT + +A ++ + G
Sbjct: 283 QLLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVREVAAVMQEFTQSG 462
Query: 149 ----LSVGTMIAGWDETGPGLYYVDSEGGRLKGNRFSVGSGSPYAYGVLDSGYKYDMSVE 204
V ++AG+D+ GP LY VD G ++G A L+ Y DM ++
Sbjct: 463 GVRPFGVSLLVAGFDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELD 642
Query: 205 EASELARRAIYHATFRDGASGGVA 228
+A A T ++G G ++
Sbjct: 643 DAVHTA-----ILTLKEGFEGQIS 699
>TC225504 homologue to UP|PSA2_ARATH (O23708) Proteasome subunit alpha type 2
(20S proteasome alpha subunit B) , complete
Length = 1151
Score = 48.9 bits (115), Expect = 2e-06
Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 4/182 (2%)
Frame = +2
Query: 29 SFQLPNSNDFDGFVKETIQMVKPAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKI 88
SF L + V+ + G T+L GV++A + + + SV+KI
Sbjct: 158 SFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLP-SILVDETSVQKI 334
Query: 89 IEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMG 148
+ P + +G D + R + + K I VT + +A ++ + G
Sbjct: 335 QLLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVREVAAVMQEFTQSG 514
Query: 149 ----LSVGTMIAGWDETGPGLYYVDSEGGRLKGNRFSVGSGSPYAYGVLDSGYKYDMSVE 204
V ++AG+D+ GP LY VD G ++G A L+ Y DM ++
Sbjct: 515 GVRPFGVSLLVAGFDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELD 694
Query: 205 EA 206
+A
Sbjct: 695 DA 700
>TC218551 homologue to UP|PSA5_SOYBN (Q9M4T8) Proteasome subunit alpha type 5
(20S proteasome alpha subunit E) (20S proteasome
subunit alpha-5) , partial (59%)
Length = 591
Score = 48.5 bits (114), Expect = 3e-06
Identities = 25/60 (41%), Positives = 34/60 (56%)
Frame = +2
Query: 151 VGTMIAGWDETGPGLYYVDSEGGRLKGNRFSVGSGSPYAYGVLDSGYKYDMSVEEASELA 210
V +IAG DE GP LYY D G + N ++GSGS A L Y D++++EA +A
Sbjct: 122 VSLLIAGHDENGPSLYYTDPSGTFWQCNGKAIGSGSEGADSSLQEQYNKDLTLQEAETIA 301
>TC226174 similar to UP|PS21_ARATH (O23714) Proteasome subunit beta type 2-1
(20S proteasome alpha subunit D1) , partial (85%)
Length = 752
Score = 47.8 bits (112), Expect = 5e-06
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Frame = +1
Query: 87 KIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLL-ANILYSYR 145
KI+ ++ + L +G D + + L++ N ++ A+ + + R
Sbjct: 28 KIMLLDSHKLIAASGEPGDRVQFTEYIQKNVALYQFRNGIPLTTAAAANFTRGELATALR 207
Query: 146 GMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGNRFSVGSGSPYAYGVLDSGYKYDMSVE 204
SV ++AG+D ETGP LYY+D K + + G GS ++ ++D Y MSVE
Sbjct: 208 KNPYSVNILLAGYDKETGPELYYIDYIATLHKLEKGAFGYGSYFSLSMMDRHYHSGMSVE 387
Query: 205 EASELARRAI 214
EA +L + I
Sbjct: 388 EAIDLVDKCI 417
>TC225189 homologue to UP|O23709 (O23709) 20S proteasome beta subunit PBB2 ,
partial (61%)
Length = 707
Score = 44.7 bits (104), Expect = 5e-05
Identities = 27/89 (30%), Positives = 47/89 (52%)
Frame = +2
Query: 54 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 113
GTT + +F++GV++ AD+RA+ G ++ ++ +KI + P + AG AAD + +
Sbjct: 227 GTTIVGLVFQDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 406
Query: 114 GIKCRLHELANKRRISVTGASKLLANILY 142
+ +LH R V A LL L+
Sbjct: 407 SSQLQLHRYHTGRESRVVTALTLLKKHLF 493
>TC225505 similar to UP|PSA2_ARATH (O23708) Proteasome subunit alpha type 2
(20S proteasome alpha subunit B) , partial (46%)
Length = 632
Score = 38.9 bits (89), Expect = 0.002
Identities = 22/78 (28%), Positives = 36/78 (45%)
Frame = +2
Query: 151 VGTMIAGWDETGPGLYYVDSEGGRLKGNRFSVGSGSPYAYGVLDSGYKYDMSVEEASELA 210
V ++AG+D+ GP LY VD G ++G A L+ Y DM +++A A
Sbjct: 17 VSLLVAGFDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELDDAVHTA 196
Query: 211 RRAIYHATFRDGASGGVA 228
T ++G G ++
Sbjct: 197 M-----LTLKEGFEGQIS 235
>TC205425 similar to UP|O23718 (O23718) 20S proteasome beta subunit PBG1 ,
partial (92%)
Length = 1076
Score = 37.7 bits (86), Expect = 0.006
Identities = 37/171 (21%), Positives = 73/171 (42%), Gaps = 3/171 (1%)
Frame = +1
Query: 54 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 113
G++ +A +K+G+++AAD S G + +SV++I I + L +G +D Q R L
Sbjct: 187 GSSVVAIKYKDGILMAADMGGSYGSTLRYKSVERIKPIGKHSLLGASGEISDFQEILRYL 366
Query: 114 GIKCRLHEL-ANKRRISVTGASKLLANILYSYRGM--GLSVGTMIAGWDETGPGLYYVDS 170
+ + + L ++Y+ R L ++ G L V+
Sbjct: 367 DELILYDNMWDDGNSLGPKEVHNYLTRVMYNRRNKFNPLWNALVLGGVKNGQKYLGMVNM 546
Query: 171 EGGRLKGNRFSVGSGSPYAYGVLDSGYKYDMSVEEASELARRAIYHATFRD 221
G + N + G G+ A +L + +++ EE +L + + +RD
Sbjct: 547 IGINFEDNHVATGLGNHLARPILRDEWHENLTFEEGVKLLEKCMRVLLYRD 699
>TC204281 similar to UP|Q8H1Y2 (Q8H1Y2) 20S proteasome alpha 6 subunit,
partial (91%)
Length = 1275
Score = 37.7 bits (86), Expect = 0.006
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 5/162 (3%)
Frame = +3
Query: 42 VKETIQMVKPAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAG 101
V+ ++ VK +G+ + K V++A ++A+ +SS KKI +++ ++ +AG
Sbjct: 264 VEYAMEAVK--QGSAAIGLRSKTHVVLACVNKAN--SELSSHQ-KKIFKVDNHIGVAIAG 428
Query: 102 GAADCQFWHRNLGIKCRLHELANKR-----RISVTGASKLLANILYSYRGMGLSVGTMIA 156
AD + R + +C + + R+ V A K S++ VG ++A
Sbjct: 429 LTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWK-RPYGVGLLVA 605
Query: 157 GWDETGPGLYYVDSEGGRLKGNRFSVGSGSPYAYGVLDSGYK 198
G DE+G LYY G + F++GS S A L+ ++
Sbjct: 606 GLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFE 731
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.316 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,686,862
Number of Sequences: 63676
Number of extensions: 123971
Number of successful extensions: 580
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of query: 271
length of database: 12,639,632
effective HSP length: 96
effective length of query: 175
effective length of database: 6,526,736
effective search space: 1142178800
effective search space used: 1142178800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC141863.8