BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141109.13 - phase: 0
(208 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC219169 30 0.60
BE800666 similar to SP|Q42961|PGKH_ Phosphoglycerate kinase chl... 29 1.3
TC225361 similar to UP|Q9M674 (Q9M674) Globulin-like protein (Fr... 28 2.3
BM307708 GP|21902084|db P0458E05.32 {Oryza sativa (japonica cult... 28 3.0
AI959809 27 5.1
TC234214 27 5.1
TC204353 homologue to UP|Q8S3F8 (Q8S3F8) S-adenosylmethionine de... 27 5.1
TC204675 homologue to UP|Q8GV76 (Q8GV76) Auxin efflux carrier pr... 27 5.1
TC208184 UP|Q39834 (Q39834) Clathrin heavy chain, complete 27 5.1
BE190516 27 5.1
NP427905 CP4EPSPS [Glycine max] 27 5.1
TC212743 similar to UP|Q93Z45 (Q93Z45) At1g02880/F22D16_33, part... 27 5.1
BF425091 27 5.1
TC233937 similar to GB|AAP37838.1|30725632|BT008479 At4g24220 {A... 27 5.1
BE023133 similar to GP|9759296|dbj gamma-tubulin interacting pro... 27 6.6
TC225001 UP|Q95I98 (Q95I98) Major histocompatibility class I rec... 27 6.6
TC230971 27 6.6
TC229486 similar to UP|Q76KV2 (Q76KV2) DNA binding with one fing... 27 6.6
TC224983 similar to UP|Q8LUS1 (Q8LUS1) NADH dehydrogenase 1 (Fra... 27 6.6
TC205357 similar to UP|Q8LRL5 (Q8LRL5) Nam-like protein 10, part... 27 6.6
>TC219169
Length = 397
Score = 30.4 bits (67), Expect = 0.60
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +3
Query: 142 FVVPHSHNDPGWKLTVEEYYDRQSRHILDTIVETLSKVKFCLFPFLGFGDFYVYVCCYCC 201
F+ ++D +++ D +SRH+ + I L F LF FL VCC+ C
Sbjct: 147 FLCDDENDDESDMISIPYNTDDKSRHLSERIPLFLPSFIFGLFNFLRM------VCCFDC 308
Query: 202 LFY 204
L++
Sbjct: 309 LYF 317
>BE800666 similar to SP|Q42961|PGKH_ Phosphoglycerate kinase chloroplast
precursor (EC 2.7.2.3). [Common tobacco] {Nicotiana
tabacum}, partial (12%)
Length = 256
Score = 29.3 bits (64), Expect = 1.3
Identities = 21/76 (27%), Positives = 35/76 (45%), Gaps = 10/76 (13%)
Frame = -2
Query: 32 RTLVKDFIFSNFFIIGLIISLLFFLIVLLRFGV-------PKPITTHFRTRTSRFRKPKK 84
RTL +F+NF ++ L++ + ++V F + P + T F R +RF
Sbjct: 237 RTLGSSLLFNNFKLVLLLVDMWLMILVTSTFSIXVTESYLPIIVVTPFSLRLARFFATAS 58
Query: 85 LS---LNGSSTIFGGF 97
+S L S+T G F
Sbjct: 57 VSTANLLNSNTPIGPF 10
>TC225361 similar to UP|Q9M674 (Q9M674) Globulin-like protein (Fragment),
partial (34%)
Length = 1394
Score = 28.5 bits (62), Expect = 2.3
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 11 WAQSILPSSNPKSKQPRKSKRRTLVKDFIFSNFFIIGLI-ISLLFFLIVLL 60
W Q+ SS P+S++P+ S L+ F+++ ++ + + L L +LL
Sbjct: 1076 WIQNFKASSYPRSRKPQISFLPLLISHFVYAYIYVFSMYDVECLLTLELLL 1228
>BM307708 GP|21902084|db P0458E05.32 {Oryza sativa (japonica
cultivar-group)}, partial (7%)
Length = 426
Score = 28.1 bits (61), Expect = 3.0
Identities = 24/74 (32%), Positives = 35/74 (46%), Gaps = 5/74 (6%)
Frame = +1
Query: 119 GAWKQGWSVSYRGDEWDNEKLKVFVVPHS-----HNDPGWKLTVEEYYDRQSRHILDTIV 173
G K+GW + EW+ +KL V V S H D GW + Y + D++V
Sbjct: 163 GENKRGWGMIV---EWNGDKLVVDGVALSALEDDHRDRGWGSYIMGYAPP*NGR--DSLV 327
Query: 174 ETLSKVKFCLFPFL 187
+ S + FCL PF+
Sbjct: 328 GS-SIMSFCLVPFI 366
>AI959809
Length = 446
Score = 27.3 bits (59), Expect = 5.1
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Frame = +1
Query: 186 FLGF--GDFYVYVCCYCCLF 203
F+GF FY Y+ C+CC F
Sbjct: 130 FVGFHGNRFYAYLSCFCCAF 189
>TC234214
Length = 418
Score = 27.3 bits (59), Expect = 5.1
Identities = 14/43 (32%), Positives = 26/43 (59%)
Frame = +2
Query: 20 NPKSKQPRKSKRRTLVKDFIFSNFFIIGLIISLLFFLIVLLRF 62
NPKS + ++ ++ FIF +F+++ L + LF VL++F
Sbjct: 230 NPKS*KSTQTLKKACNTLFIFLSFYLVYLFVVNLFRSNVLIQF 358
>TC204353 homologue to UP|Q8S3F8 (Q8S3F8) S-adenosylmethionine decarboxylase,
partial (58%)
Length = 1265
Score = 27.3 bits (59), Expect = 5.1
Identities = 12/45 (26%), Positives = 20/45 (43%)
Frame = -2
Query: 134 WDNEKLKVFVVPHSHNDPGWKLTVEEYYDRQSRHILDTIVETLSK 178
WD + + S PGWK + + + S+ I +T + L K
Sbjct: 709 WDFARALKPIPSGSAKSPGWKKDISSLFSKPSKPIAETAMAMLQK 575
>TC204675 homologue to UP|Q8GV76 (Q8GV76) Auxin efflux carrier protein, partial
(40%)
Length = 2164
Score = 27.3 bits (59), Expect = 5.1
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = -2
Query: 11 WAQSILPSSNPKSKQ----PRKSKRRTLVKDFIFSNFFIIGLIISLLFFLIVLL 60
WA+ SNP++ Q P ++ R LV S+FF LII ++ +I+++
Sbjct: 1782 WARQQC*RSNPQNLQLCLVPNSARGRELV-----SSFFFFFLIIIIIIIIIIII 1636
>TC208184 UP|Q39834 (Q39834) Clathrin heavy chain, complete
Length = 5624
Score = 27.3 bits (59), Expect = 5.1
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = -1
Query: 10 NWAQSILPSSNPKSKQPRKSKRRTLVKDFIFSNFFIIGLIIS---LLFFLIVLLRF 62
+W SS+ + + R+SKR+ L + SN+F++ L+ S +L F +L +F
Sbjct: 5126 HWRGRGKASSHSRHWRCRQSKRQQLSIHILLSNYFLLFLLFSFHLVLRFYFILHQF 4959
>BE190516
Length = 424
Score = 27.3 bits (59), Expect = 5.1
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 192 FYVYVCCYCCLFYE 205
F +Y+CC CC F++
Sbjct: 110 F*IYICCCCCFFFK 151
>NP427905 CP4EPSPS [Glycine max]
Length = 1368
Score = 27.3 bits (59), Expect = 5.1
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +1
Query: 80 RKPKKLSLNGSSTIFGGFASVDLTTKGLYDKIEFLDVDGGAWKQGWSVSYRGDEW 134
R P S++ S +FGG AS + GL + + ++ G + GD W
Sbjct: 67 RIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGARIRKEGDTW 231
>TC212743 similar to UP|Q93Z45 (Q93Z45) At1g02880/F22D16_33, partial (22%)
Length = 610
Score = 27.3 bits (59), Expect = 5.1
Identities = 20/59 (33%), Positives = 31/59 (51%), Gaps = 11/59 (18%)
Frame = -1
Query: 34 LVKDFIFSNFFIIGLIISLLFFLIVLLRFGVPKP------ITTHF-----RTRTSRFRK 81
+V D +FS FF+ LI+ LLF L + + + +P + T F R RTS F++
Sbjct: 487 IVHDMVFSFFFL--LILFLLFHLRITITYNTTEPRNVSSLLKTDFQGTVTRNRTS*FKE 317
>BF425091
Length = 323
Score = 27.3 bits (59), Expect = 5.1
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 4 SSRRGGNWAQSILPSSNPKSKQPR 27
SS +GG+WA SI P+S SK PR
Sbjct: 104 SSVKGGSWATSIFPNS---SKGPR 166
>TC233937 similar to GB|AAP37838.1|30725632|BT008479 At4g24220 {Arabidopsis
thaliana;} , partial (47%)
Length = 692
Score = 27.3 bits (59), Expect = 5.1
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -3
Query: 4 SSRRGGNWAQSILPSSNPKSKQPR 27
SS +GG+WA SI P+S SK PR
Sbjct: 537 SSVKGGSWATSIFPNS---SKGPR 475
>BE023133 similar to GP|9759296|dbj gamma-tubulin interacting protein-like
{Arabidopsis thaliana}, partial (16%)
Length = 410
Score = 26.9 bits (58), Expect = 6.6
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 137 EKLKVFVVPHSHNDPGWKLTVEEYYDRQSRHILDTI-VETLSKVKFCLFPFL 187
++L+V ++PH D GW + EY +R LDT+ E++ +F FL
Sbjct: 192 DRLRVKMMPHESGDRGWDVFSLEY---DARVPLDTVFTESVMARYLRIFNFL 338
>TC225001 UP|Q95I98 (Q95I98) Major histocompatibility class I receptor,
partial (8%)
Length = 548
Score = 26.9 bits (58), Expect = 6.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 184 FPFLGFGDFYVYVCC 198
FPF FG +VY CC
Sbjct: 71 FPFCAFGALWVYFCC 27
>TC230971
Length = 423
Score = 26.9 bits (58), Expect = 6.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 109 DKIEFLDVDGGAWKQGWSV 127
D+ +D+DGG+W W+V
Sbjct: 10 DRRSVIDIDGGSWGPAWAV 66
>TC229486 similar to UP|Q76KV2 (Q76KV2) DNA binding with one finger 2
protein, partial (21%)
Length = 1297
Score = 26.9 bits (58), Expect = 6.6
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3
Query: 195 YVCCYCCLFY 204
Y CCYCC +Y
Sbjct: 165 YYCCYCCYYY 194
>TC224983 similar to UP|Q8LUS1 (Q8LUS1) NADH dehydrogenase 1 (Fragment),
partial (37%)
Length = 1412
Score = 26.9 bits (58), Expect = 6.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 184 FPFLGFGDFYVYVCC 198
FPF FG +VY CC
Sbjct: 1123 FPFCAFGALWVYFCC 1167
>TC205357 similar to UP|Q8LRL5 (Q8LRL5) Nam-like protein 10, partial (46%)
Length = 777
Score = 26.9 bits (58), Expect = 6.6
Identities = 13/29 (44%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = -2
Query: 38 FIFSNFFIIGLIISLLFFLIV-LLRFGVP 65
F F++FF + L++ +LFFL++ LL F +P
Sbjct: 101 F*FASFFFLWLLMLVLFFLLLALLCFALP 15
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.326 0.143 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,746,471
Number of Sequences: 63676
Number of extensions: 182323
Number of successful extensions: 2376
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 2334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2369
length of query: 208
length of database: 12,639,632
effective HSP length: 93
effective length of query: 115
effective length of database: 6,717,764
effective search space: 772542860
effective search space used: 772542860
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Medicago: description of AC141109.13