BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141106.11 + phase: 0 /pseudo
(333 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC205268 similar to UP|Q6Z001 (Q6Z001) Membrane protein-like, pa... 154 5e-38
TC205269 similar to UP|Q6Z001 (Q6Z001) Membrane protein-like, pa... 148 4e-36
TC231768 similar to UP|Q6Z001 (Q6Z001) Membrane protein-like, pa... 123 3e-28
AW099768 119 1e-27
AI441331 114 6e-26
TC205270 similar to UP|Q6Z001 (Q6Z001) Membrane protein-like, pa... 83 2e-24
TC220160 similar to UP|Q6Z001 (Q6Z001) Membrane protein-like, pa... 101 5e-22
BE190433 84 7e-17
TC205484 similar to GB|AAO63445.1|28951043|BT005381 At2g25737 {A... 79 3e-15
TC205485 similar to GB|AAO63445.1|28951043|BT005381 At2g25737 {A... 78 5e-15
BI321835 70 6e-14
TC205486 similar to GB|AAO63445.1|28951043|BT005381 At2g25737 {A... 69 2e-12
AI795109 65 3e-11
TC205487 similar to GB|AAO63445.1|28951043|BT005381 At2g25737 {A... 59 4e-09
BI424298 54 1e-07
TC223522 weakly similar to UP|Q6Z001 (Q6Z001) Membrane protein-l... 41 9e-04
TC211860 similar to GB|AAO63445.1|28951043|BT005381 At2g25737 {A... 39 0.004
CO984940 33 0.18
BF008683 33 0.23
AW234377 32 0.40
>TC205268 similar to UP|Q6Z001 (Q6Z001) Membrane protein-like, partial (74%)
Length = 1678
Score = 154 bits (389), Expect = 5e-38
Identities = 115/221 (52%), Positives = 132/221 (59%), Gaps = 17/221 (7%)
Frame = +2
Query: 129 RMFIGRNLDFFSLFGS*YLHYR*EKY-----------------L*L*E*VDMRLYFYTKE 171
RMF+G++L+FFSL GS YL R +K L *E + ++L F T+
Sbjct: 785 RMFVGKHLEFFSLSGSLYLPPRLQKVTQQLVQWNIGYLIYYRSLWH*ERLHIKLCFCTQG 964
Query: 172 KEL*LPMEIKE*IGV*SS*FYIGHVA*LLE*SVACLVLVEDLS*GHFSLDLESLLRWQVL 231
+E * P EI E G +S* I VA L * VACLVLVE L FS ESLLR QVL
Sbjct: 965 RE**HPKEINELNGERTS*LCIVPVAYALV*LVACLVLVEVLFWDLFSSS*ESLLRCQVL 1144
Query: 232 HPLLQ*HFLHLCLWWNITF*NVFQFHMLFTL*L*PLLLHLLGNIW*ESLLPY*EEHQLSF 291
LL *HF HLC WWNITF*N F F +LFT L PLL LLG *ES LPY* EH+ SF
Sbjct: 1145 QLLLP*HFQHLCQWWNITF*NGFLFLILFTSWLYPLLRPLLGKF**ESWLPY*GEHR*SF 1324
Query: 292 SS*PSQFL*VVYH*VEQA*QI*LKGLKTKSTWDLVTYVRTR 332
S P+ FL V YH*V A Q * K L+ KSTW L T+V T+
Sbjct: 1325 LSSPAPFLSVQYH*VVWAYQT*SKELQIKSTWGLKTFVPTQ 1447
Score = 145 bits (366), Expect = 2e-35
Identities = 67/88 (76%), Positives = 78/88 (88%)
Frame = +1
Query: 1 MITGGAGATVLYNLKKRHPTLDLPVIDYDLALLFQPMLMLGISLGVAFNLIFPDWMLTTL 60
MITGGA ATV YNLK++HPTLD+PVIDYDLALLFQP+L+LGIS+GVAFN+IF DWM+T L
Sbjct: 388 MITGGAAATVFYNLKQKHPTLDMPVIDYDLALLFQPVLVLGISIGVAFNVIFADWMITVL 567
Query: 61 LIIFFTGISVNAFLKGVNTWKKETLTKK 88
L+I F GI+ AFLKGV TWKKET+ KK
Sbjct: 568 LLIIFVGIATKAFLKGVETWKKETIIKK 651
>TC205269 similar to UP|Q6Z001 (Q6Z001) Membrane protein-like, partial (35%)
Length = 771
Score = 148 bits (373), Expect = 4e-36
Identities = 103/175 (58%), Positives = 114/175 (64%)
Frame = +1
Query: 158 *E*VDMRLYFYTKEKEL*LPMEIKE*IGV*SS*FYIGHVA*LLE*SVACLVLVEDLS*GH 217
*E + ++L F T+ +E * P EIKE G +S*F I VA L * VACLVLVE L
Sbjct: 25 *ERLHIKLCFCTQARE**HPKEIKEHNGERTS*FCIVLVAYALV*LVACLVLVEVLFWDP 204
Query: 218 FSLDLESLLRWQVLHPLLQ*HFLHLCLWWNITF*NVFQFHMLFTL*L*PLLLHLLGNIW* 277
FS ESLLR QVL PLL *HF HLC WWNITF*N F F +LFTL L PLL LL *
Sbjct: 205 FSWS*ESLLRCQVLQPLLP*HFQHLCQWWNITF*NGFLFLILFTLWLYPLLRPLLDKF** 384
Query: 278 ESLLPY*EEHQLSFSS*PSQFL*VVYH*VEQA*QI*LKGLKTKSTWDLVTYVRTR 332
ES LPY* EH SFSS P+ FL V YH*V A Q * K L+ KSTW L T+V T+
Sbjct: 385 ESWLPY*GEHL*SFSSSPAPFLLVQYH*VVWAYQT*SKKLQIKSTWGLKTFVPTQ 549
>TC231768 similar to UP|Q6Z001 (Q6Z001) Membrane protein-like, partial
(21%)
Length = 504
Score = 123 bits (309), Expect(2) = 3e-28
Identities = 58/90 (64%), Positives = 71/90 (78%)
Frame = +2
Query: 1 MITGGAGATVLYNLKKRHPTLDLPVIDYDLALLFQPMLMLGISLGVAFNLIFPDWMLTTL 60
MI G + +TV YNL+ RHPTLD+P+IDYDLAL+FQPMLMLGIS+GV N++F DWM+T L
Sbjct: 8 MIMGASISTVYYNLRLRHPTLDMPLIDYDLALIFQPMLMLGISIGVICNVMFADWMVTVL 187
Query: 61 LIIFFTGISVNAFLKGVNTWKKETLTKKVA 90
LII F S A KG++TWKKET+ KK A
Sbjct: 188LIILFIATSTKATYKGIDTWKKETIAKKEA 277
Score = 19.6 bits (39), Expect(2) = 3e-28
Identities = 8/22 (36%), Positives = 13/22 (58%)
Frame = +3
Query: 129 RMFIGRNLDFFSLFGS*YLHYR 150
++FIG+N +FG Y +R
Sbjct: 375 KIFIGKNYHSLRMFGWLYSLFR 440
>AW099768
Length = 380
Score = 119 bits (299), Expect = 1e-27
Identities = 54/77 (70%), Positives = 63/77 (81%)
Frame = +3
Query: 12 YNLKKRHPTLDLPVIDYDLALLFQPMLMLGISLGVAFNLIFPDWMLTTLLIIFFTGISVN 71
YNL RHPTLDLP+IDYDLALL QPMLMLGIS+GVAFN++ DWM+T LL++ F G S
Sbjct: 6 YNLNLRHPTLDLPIIDYDLALLIQPMLMLGISIGVAFNVVVADWMVTMLLLVLFLGTSTK 185
Query: 72 AFLKGVNTWKKETLTKK 88
AF KGV TWKKET+ K+
Sbjct: 186AFFKGVETWKKETIMKE 236
>AI441331
Length = 330
Score = 114 bits (285), Expect = 6e-26
Identities = 70/104 (67%), Positives = 72/104 (68%)
Frame = +2
Query: 189 S*FYIGHVA*LLE*SVACLVLVEDLS*GHFSLDLESLLRWQVLHPLLQ*HFLHLCLWWNI 248
S*FY VA LL * + C LVED S FSLDLE LLR QVLHPL H LHL WWNI
Sbjct: 11 S*FYSALVAHLLA*LLVC*ALVEDSSWDPFSLDLEFLLRLQVLHPLW*WHSLHLWQWWNI 190
Query: 249 TF*NVFQFHMLFTL*L*PLLLHLLGNIW*ESLLPY*EEHQLSFS 292
TF NV F MLFT *L*PLLLHLL +IW*E LLPY EH SFS
Sbjct: 191 TFSNVSLFLMLFTS*L*PLLLHLLDSIW*ERLLPYWGEHL*SFS 322
>TC205270 similar to UP|Q6Z001 (Q6Z001) Membrane protein-like, partial (35%)
Length = 1224
Score = 83.2 bits (204), Expect(2) = 2e-24
Identities = 71/178 (39%), Positives = 84/178 (46%), Gaps = 50/178 (28%)
Frame = +2
Query: 129 RMFIGRNLDFFSLFGS*YLHYR*EKYL*L------------------------------- 157
RMF+G++L+FFSL GS YL R +K + +
Sbjct: 47 RMFVGKHLEFFSLSGSLYLPPRLQKLVDMKSAIPIRNFHFVFLPTWSSDIIMPLFSNRVT 226
Query: 158 -------------------*E*VDMRLYFYTKEKEL*LPMEIKE*IGV*SS*FYIGHVA* 198
*E + ++L F T+ +E * P EI E G +S* I VA
Sbjct: 227 QQLVQWNIGYLIYYRSLWH*ERLHIKLCFCTQGRE**HPKEINELNGERTS*LCIVPVAY 406
Query: 199 LLE*SVACLVLVEDLS*GHFSLDLESLLRWQVLHPLLQ*HFLHLCLWWNITF*NVFQF 256
L * VACLVLVE L FS ESLLR QVL LL *HF HLC WWNITF*N F F
Sbjct: 407 ALV*LVACLVLVEVLLWDLFSSS*ESLLRCQVLQLLLP*HFQHLCQWWNITF*NGFLF 580
Score = 47.0 bits (110), Expect(2) = 2e-24
Identities = 30/47 (63%), Positives = 32/47 (67%)
Frame = +3
Query: 259 LFTL*L*PLLLHLLGNIW*ESLLPY*EEHQLSFSS*PSQFL*VVYH* 305
LFT L PLL LLG *ES LPY* EH+ SFSS P+ FL V YH*
Sbjct: 684 LFTSWLYPLLRPLLGKF**ESWLPY*GEHR*SFSSSPAPFLSVQYH* 824
>TC220160 similar to UP|Q6Z001 (Q6Z001) Membrane protein-like, partial (29%)
Length = 610
Score = 101 bits (251), Expect = 5e-22
Identities = 47/67 (70%), Positives = 55/67 (81%)
Frame = +3
Query: 1 MITGGAGATVLYNLKKRHPTLDLPVIDYDLALLFQPMLMLGISLGVAFNLIFPDWMLTTL 60
MI G A +TV YNL RHPTLDLP+IDYDLALL QPMLMLGIS+GVAFN++ DWM+T L
Sbjct: 216 MIMGAALSTVYYNLNLRHPTLDLPIIDYDLALLIQPMLMLGISIGVAFNVVVADWMVTML 395
Query: 61 LIIFFTG 67
L++ F G
Sbjct: 396 LLVLFLG 416
>BE190433
Length = 472
Score = 84.3 bits (207), Expect = 7e-17
Identities = 70/153 (45%), Positives = 83/153 (53%)
Frame = +3
Query: 177 PMEIKE*IGV*SS*FYIGHVA*LLE*SVACLVLVEDLS*GHFSLDLESLLRWQVLHPLLQ 236
P EI E G ++* I VA L * VACLVLVE + + L ESLL+ VL LL
Sbjct: 9 PKEINELNGERTT*LCIVPVAYALV*LVACLVLVEVIFSDLYYLRCESLLKSAVLQLLLP 188
Query: 237 *HFLHLCLWWNITF*NVFQFHMLFTL*L*PLLLHLLGNIW*ESLLPY*EEHQLSFSS*PS 296
*HF HLC WWNIT+*N +LFT L LLL LL *ES LPY EH+ S S P+
Sbjct: 189 *HFQHLCTWWNITY*NGALLLILFTYRLYTLLLPLLDK***ESWLPYYGEHR*SSISSPT 368
Query: 297 QFL*VVYH*VEQA*QI*LKGLKTKSTWDLVTYV 329
+ Y+*V * K L+ L T+V
Sbjct: 369 PSWSMQYY*VALTYLT*SKNLQMIRPCRLKTFV 467
>TC205484 similar to GB|AAO63445.1|28951043|BT005381 At2g25737 {Arabidopsis
thaliana;} , partial (37%)
Length = 821
Score = 79.0 bits (193), Expect = 3e-15
Identities = 77/173 (44%), Positives = 88/173 (50%)
Frame = +1
Query: 159 E*VDMRLYFYTKEKEL*LPMEIKE*IGV*SS*FYIGHVA*LLE*SVACLVLVEDLS*GHF 218
E*+ MR + + E LP E K I + SS* I + L * VAC ED HF
Sbjct: 19 E*LHMRQLPCSVDVE*LLPRENKGKISLFSS**SIVSLVFWLV*LVACWD*EEDSLWVHF 198
Query: 219 SLDLESLLRWQVLHPLLQ*HFLHLCLWWNITF*NVFQFHMLFTL*L*PLLLHLLGNIW*E 278
ES LR Q P LQ* HLCL N T *NVFQF MLFT L LLL LL + *E
Sbjct: 199 FWSWESHLRCQAQQPPLQ*PSPHLCLS*NTTC*NVFQFLMLFTSFLWLLLLPLLDSTL*E 378
Query: 279 SLLPY*EEHQLSFSS*PSQFL*VVYH*VEQA*QI*LKGLKTKSTWDLVTYVRT 331
+ L Y EH L S *P Q+L V *VE A I + +TWDL + T
Sbjct: 379 N*LSYSGEHLL*SSF*PLQYLSVPSR*VELALSIWYTRSRIMNTWDLRIFANT 537
>TC205485 similar to GB|AAO63445.1|28951043|BT005381 At2g25737 {Arabidopsis
thaliana;} , partial (40%)
Length = 802
Score = 78.2 bits (191), Expect = 5e-15
Identities = 76/167 (45%), Positives = 86/167 (50%)
Frame = +2
Query: 161 VDMRLYFYTKEKEL*LPMEIKE*IGV*SS*FYIGHVA*LLE*SVACLVLVEDLS*GHFSL 220
+DMR K+ + L EIK + + SS* YI + LE* VA VED GH
Sbjct: 86 LDMRQLPCIKDGDKFLQWEIKGKLLLLSS*LYIVSLVYWLE*LVAYWE*VEDS*WGHSFW 265
Query: 221 DLESLLRWQVLHPLLQ*HFLHLCLWWNITF*NVFQFHMLFTL*L*PLLLHLLGNIW*ESL 280
ES LR+QV P L * F HLCL N T NVFQF ML TL L L G+I *ES
Sbjct: 266 SWESHLRFQVPQPPLP*PFPHLCLL*NTTCSNVFQFLMLCTLLRLLLFQQL*GSIL*ES* 445
Query: 281 LPY*EEHQLSFSS*PSQFL*VVYH*VEQA*QI*LKGLKTKSTWDLVT 327
EH S *PSQ+L H*VE A K LK S WDL+T
Sbjct: 446 SMCLGEHL*SSLF*PSQYLSAQSH*VELAL*QWSKRLKITSIWDLMT 586
>BI321835
Length = 433
Score = 70.1 bits (170), Expect(2) = 6e-14
Identities = 34/49 (69%), Positives = 38/49 (77%)
Frame = +1
Query: 19 PTLDLPVIDYDLALLFQPMLMLGISLGVAFNLIFPDWMLTTLLIIFFTG 67
PTLD PVIDYDL LL QP LMLGIS+GV ++IF DWM+T LLII G
Sbjct: 286 PTLDEPVIDYDLMLLIQPTLMLGISIGVILSVIFADWMVTILLIILCIG 432
Score = 24.6 bits (52), Expect(2) = 6e-14
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 1 MITGGAGATVLYNLKKRHP 19
M+TG A + V + +K+RHP
Sbjct: 231 MVTGAAISAVFFCMKQRHP 287
>TC205486 similar to GB|AAO63445.1|28951043|BT005381 At2g25737 {Arabidopsis
thaliana;} , partial (31%)
Length = 842
Score = 69.3 bits (168), Expect = 2e-12
Identities = 67/147 (45%), Positives = 75/147 (50%)
Frame = +2
Query: 179 EIKE*IGV*SS*FYIGHVA*LLE*SVACLVLVEDLS*GHFSLDLESLLRWQVLHPLLQ*H 238
E K I + SS* I + L * VAC ED HF + ES LR+ P L *
Sbjct: 26 ENKGKISLFSS*LSIVSLVYWLV*LVACWD*EEDSLWVHFFWNWESHLRFLAPQPPLP*P 205
Query: 239 FLHLCLWWNITF*NVFQFHMLFTL*L*PLLLHLLGNIW*ESLLPY*EEHQLSFSS*PSQF 298
F HLCL N T *NVFQF MLFT L LLL L + *E+ Y EH LS *P Q+
Sbjct: 206 FPHLCLL*NTTC*NVFQFLMLFTSSLWLLLLPSLDSTL*EN*SSYLGEHLLSSLF*PLQY 385
Query: 299 L*VVYH*VEQA*QI*LKGLKTKSTWDL 325
L V H*VE A I +TWDL
Sbjct: 386 LSVQSH*VELAL*IWYTRSIIMNTWDL 466
>AI795109
Length = 139
Score = 65.5 bits (158), Expect = 3e-11
Identities = 30/43 (69%), Positives = 36/43 (82%)
Frame = +2
Query: 6 AGATVLYNLKKRHPTLDLPVIDYDLALLFQPMLMLGISLGVAF 48
A +TV YNL+ HPTLDLPVIDYD+ALL+QPML LG ++G AF
Sbjct: 8 AVSTVCYNLRFTHPTLDLPVIDYDMALLYQPMLTLGTNIGAAF 136
>TC205487 similar to GB|AAO63445.1|28951043|BT005381 At2g25737 {Arabidopsis
thaliana;} , partial (22%)
Length = 1048
Score = 58.5 bits (140), Expect = 4e-09
Identities = 50/101 (49%), Positives = 54/101 (52%)
Frame = +2
Query: 227 RWQVLHPLLQ*HFLHLCLWWNITF*NVFQFHMLFTL*L*PLLLHLLGNIW*ESLLPY*EE 286
R+QV P L * F HLCL N T NVFQF ML TL L L G+I *ES E
Sbjct: 332 RFQVPQPPLP*PFPHLCLL*NTTCSNVFQFLMLCTLLRLLLFQQL*GSIL*ES*SMCLGE 511
Query: 287 HQLSFSS*PSQFL*VVYH*VEQA*QI*LKGLKTKSTWDLVT 327
H S *PSQ+L H*VE A K LK S WDL+T
Sbjct: 512 HL*SSLF*PSQYLSAQSH*VELAL*QWSKRLKITSIWDLMT 634
>BI424298
Length = 422
Score = 53.9 bits (128), Expect = 1e-07
Identities = 55/139 (39%), Positives = 70/139 (49%)
Frame = +1
Query: 161 VDMRLYFYTKEKEL*LPMEIKE*IGV*SS*FYIGHVA*LLE*SVACLVLVEDLS*GHFSL 220
+DMR K+ + L EI+ + + S* YI + ++* V VED GH
Sbjct: 1 MDMRYLPCIKDGDKFLLWEIQVKLLLLRS*LYIVSLEYWMQ*LVVYWQ*VEDS*WGHSFC 180
Query: 221 DLESLLRWQVLHPLLQ*HFLHLCLWWNITF*NVFQFHMLFTL*L*PLLLHLLGNIW*ESL 280
+ ES LR+QV L * F HLC+W N T NVFQF ML TL L L G+I *E
Sbjct: 181 NWESHLRFQVPQTTLL*PFPHLCVW*NTTCSNVFQFLMLCTLLWLLLFQKL*GSIL*EI* 360
Query: 281 LPY*EEHQLSFSS*PSQFL 299
E+ S *PSQ+L
Sbjct: 361 SMCLGEYL*SSLF*PSQYL 417
>TC223522 weakly similar to UP|Q6Z001 (Q6Z001) Membrane protein-like, partial
(18%)
Length = 429
Score = 40.8 bits (94), Expect = 9e-04
Identities = 38/87 (43%), Positives = 46/87 (52%)
Frame = +3
Query: 242 LCLWWNITF*NVFQFHMLFTL*L*PLLLHLLGNIW*ESLLPY*EEHQLSFSS*PSQFL*V 301
L L +NIT * VF F ML +L L L H +I SLL + F S PSQ+L V
Sbjct: 9 LYLSYNITC*IVFLFLMLSSLLLWLQLQHS*DSISLTSLLISSKGLL*LFLSWPSQYLLV 188
Query: 302 VYH*VEQA*QI*LKGLKTKSTWDLVTY 328
H*VE A Q * K +TWDL+ +
Sbjct: 189 QLH*VESAYQT*S*RFKGMNTWDLIIF 269
>TC211860 similar to GB|AAO63445.1|28951043|BT005381 At2g25737 {Arabidopsis
thaliana;} , partial (33%)
Length = 626
Score = 38.5 bits (88), Expect = 0.004
Identities = 43/110 (39%), Positives = 51/110 (46%)
Frame = +2
Query: 216 GHFSLDLESLLRWQVLHPLLQ*HFLHLCLWWNITF*NVFQFHMLFTL*L*PLLLHLLGNI 275
GH + E LLR QV H LL F C W N T V ++ ML TL L L ++
Sbjct: 140 GHCF*NWEFLLR*QVPHQLLPWFFHPPCQWCNTTCWIVSRYLMLPTLHWLQP*LPSLVSM 319
Query: 276 W*ESLLPY*EEHQLSFSS*PSQFL*VVYH*VEQA*QI*LKGLKTKSTWDL 325
W*E L + EH S S * F *VE *+I* + K S W L
Sbjct: 320 W*EK*L*FLAEHPSSSSY*H*PFSSAQSV*VEWE*RI*SRR*KIMSIWAL 469
>CO984940
Length = 549
Score = 33.1 bits (74), Expect = 0.18
Identities = 46/141 (32%), Positives = 56/141 (39%), Gaps = 37/141 (26%)
Frame = -2
Query: 225 LLRWQVLHPLLQ*HFLHLCLWWNITF*NVFQFHM-------------------------- 258
+ R QV PLL+* HL L +NIT * VF F M
Sbjct: 548 MCR*QVPQPLLE*CIHHLYLSYNITC*IVFLFLMVKLNLIHIVPFYYF*MVFKGNINLFK 369
Query: 259 -----------LFTL*L*PLLLHLLGNIW*ESLLPY*EEHQLSFSS*PSQFL*VVYH*VE 307
L +L L L H +I SLL + F S PSQ+L V H*VE
Sbjct: 368 *FLCMFQPVLQLSSLLLWLQLQHS*DSISLTSLLISSKGLL*LFLSWPSQYLLVQLH*VE 189
Query: 308 QA*QI*LKGLKTKSTWDLVTY 328
A Q * K +TWDL+ +
Sbjct: 188 SAYQT*S*RFKGMNTWDLIIF 126
>BF008683
Length = 142
Score = 32.7 bits (73), Expect = 0.23
Identities = 22/40 (55%), Positives = 24/40 (60%)
Frame = +3
Query: 223 ESLLRWQVLHPLLQ*HFLHLCLWWNITF*NVFQFHMLFTL 262
ESLL++ V P L F HLCL N T VFQF ML TL
Sbjct: 18 ESLLKFLVPLPPLPCPFPHLCL**NTTCSYVFQFLMLCTL 137
>AW234377
Length = 422
Score = 32.0 bits (71), Expect = 0.40
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 126 LLSRMFIGRNLDFFSLFGS*YLHYR 150
+L +M+IGR+LDF+ FG LHYR
Sbjct: 321 VLLKMYIGRSLDFWCSFGFHSLHYR 395
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.369 0.171 0.620
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,640,065
Number of Sequences: 63676
Number of extensions: 223842
Number of successful extensions: 2913
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 2143
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 2259
length of query: 333
length of database: 12,639,632
effective HSP length: 98
effective length of query: 235
effective length of database: 6,399,384
effective search space: 1503855240
effective search space used: 1503855240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 59 (27.3 bits)
Medicago: description of AC141106.11