BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140104.6 - phase: 0
(216 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC210410 100 5e-22
TC232865 70 7e-13
AW317295 53 9e-08
TC226916 45 3e-05
CO983301 34 0.044
TC226918 UP|O36513 (O36513) RNA dependent RNA polymerase (Fragme... 32 0.29
TC221495 similar to UP|Q8W3M8 (Q8W3M8) 6b-interacting protein 1,... 31 0.49
AI437639 30 1.1
TC208994 similar to UP|Q8W3M8 (Q8W3M8) 6b-interacting protein 1,... 29 1.4
BQ741185 29 1.4
TC225848 homologue to UP|SUS2_PEA (O24301) Sucrose synthase 2 (... 29 1.4
TC214902 homologue to UP|Q9AVR8 (Q9AVR8) Sucrose synthase isofor... 28 2.4
TC228830 similar to GB|AAN28779.1|23505839|AY143840 At4g27320/M4... 28 3.2
TC213701 28 4.2
TC231613 similar to UP|ANX4_FRAAN (P51074) Annexin-like protein ... 27 5.4
TC228456 similar to GB|AAM98287.1|22655390|AY142023 At1g51440/F5... 27 5.4
TC209047 similar to UP|Q6NQK2 (Q6NQK2) At1g25580, partial (19%) 27 7.1
BE059506 similar to PIR|F86200|F8 protein F12K11.17 [imported] -... 27 7.1
TC218620 similar to UP|Q8GUA8 (Q8GUA8) Ornithine aminotransferas... 27 7.1
TC214161 weakly similar to GB|AAS76234.1|45752672|BT012139 At3g5... 27 7.1
>TC210410
Length = 825
Score = 100 bits (249), Expect = 5e-22
Identities = 52/150 (34%), Positives = 88/150 (58%), Gaps = 1/150 (0%)
Frame = +3
Query: 65 YTQKQLKNRMDTLRGEWTIWKQLLGKETGLGWNHHIGNIDADSAWWDAKIR-NVKYAKFR 123
Y KQ +NR D+L+ EW +W +L+GK+TGLGW+ I A WW+AKI+ + + AKFR
Sbjct: 9 YEYKQFRNRWDSLKKEWQLWAKLIGKDTGLGWDGEKKTIAASDEWWEAKIQEDPEVAKFR 188
Query: 124 FQGLEFCDELEFIFGEIVATSQCACAPAMGVPLESTGKNTTADVAREIIESDDELNIDEL 183
QGL+F E+EF+F +AT A AP+ + G NT + + I+ + ++ ++E
Sbjct: 189 EQGLKFLPEMEFLFKGTIATGFAAYAPSED-SRQYEGFNTRTEETNDNIDDNTDMEVNEP 365
Query: 184 SPMENTQSKNKRKVSPRMRKQQRVRQRLGL 213
TQ+ + K + + ++ + +R+G+
Sbjct: 366 EIDTTTQNTSSAKENGQRKRGREGDKRIGV 455
>TC232865
Length = 920
Score = 70.1 bits (170), Expect = 7e-13
Identities = 43/140 (30%), Positives = 68/140 (47%), Gaps = 1/140 (0%)
Frame = +2
Query: 1 MASKESLPNSSENLGKAKWDTFSTKMLLDICMVEIHKCGKLGIAFRNKKWEEIRDEYNKR 60
+A L + +AKW T TK+L + + ++HK K F K W+ I DE+ K+
Sbjct: 89 LARSRRLETQQQEQSRAKWTTSLTKILAALMVDQVHKGNKHNNLFNKKAWKYICDEFYKK 268
Query: 61 ANKNYTQKQLKNRMDTLRGEWTIWKQLLGKETGLGWNHHIGNIDADSAWWDAKIRNVKYA 120
+ ++QLKNR LR ++TI K +L ++ W+ G+I A+ W I+ A
Sbjct: 269 TGLKWDKEQLKNRYSVLRRQYTIVKSIL-DQSDFSWDEATGSITANDEIWAEYIKKHPDA 445
Query: 121 K-FRFQGLEFCDELEFIFGE 139
+ + G EL IF E
Sbjct: 446 ETVKTGGCSIFKELCTIFSE 505
>AW317295
Length = 358
Score = 53.1 bits (126), Expect = 9e-08
Identities = 34/119 (28%), Positives = 60/119 (49%), Gaps = 1/119 (0%)
Frame = +2
Query: 25 KMLLDICMVEIHKCGKLGIAFRNKKWEEIRDEYNKRANKNYTQKQLKNRMDTLRGEWTIW 84
+ LL++ + +HK K G F + W ++ ++N + Y + LKNR R ++
Sbjct: 2 RYLLELVLSHVHKGNKTGKVFSRQAWVDMIKQFNTKFGFKYDVEVLKNRHKRFRKQYNDM 181
Query: 85 KQLLGKETGLGWNHHIGNIDADSAWWDAKIRNVKYAK-FRFQGLEFCDELEFIFGEIVA 142
K ++G++ GL W+ I AD WD I+ A+ F+ + + + D+L I G VA
Sbjct: 182 KMIVGQK-GLQWDGTQNMIVADDKAWDECIKAHPDAQPFKKRVIPYYDDLCIINGHAVA 355
>TC226916
Length = 1143
Score = 45.1 bits (105), Expect = 3e-05
Identities = 19/74 (25%), Positives = 35/74 (46%)
Frame = +2
Query: 5 ESLPNSSENLGKAKWDTFSTKMLLDICMVEIHKCGKLGIAFRNKKWEEIRDEYNKRANKN 64
E+ + + +W K+ D+ + +I + F K W IRDE+N++ + N
Sbjct: 89 EASNQPKQERSRTRWTASLDKIFADLVVKQIQLGNRPNNVFDKKTWNHIRDEFNRQTDLN 268
Query: 65 YTQKQLKNRMDTLR 78
+ QL+ +D LR
Sbjct: 269 FNNNQLRKHLDVLR 310
>CO983301
Length = 825
Score = 34.3 bits (77), Expect = 0.044
Identities = 15/49 (30%), Positives = 28/49 (56%)
Frame = -2
Query: 80 EWTIWKQLLGKETGLGWNHHIGNIDADSAWWDAKIRNVKYAKFRFQGLE 128
+WT WK+ +G G+G I + + +WWD + ++KY+ R + +E
Sbjct: 236 DWTDWKRWMGYPDGIG----ISSDRSWESWWDEQNEHLKYSNLRGKIIE 102
>TC226918 UP|O36513 (O36513) RNA dependent RNA polymerase (Fragment), partial
(11%)
Length = 612
Score = 31.6 bits (70), Expect = 0.29
Identities = 13/58 (22%), Positives = 26/58 (44%)
Frame = +1
Query: 5 ESLPNSSENLGKAKWDTFSTKMLLDICMVEIHKCGKLGIAFRNKKWEEIRDEYNKRAN 62
E+ + + +W K+ D+ + +I + F K W IRDE+N++ +
Sbjct: 436 EASNQPKQERSRTRWTASLDKIFADLVVKQIQLGNRPNNVFDKKTWNHIRDEFNRQTD 609
>TC221495 similar to UP|Q8W3M8 (Q8W3M8) 6b-interacting protein 1, partial
(24%)
Length = 484
Score = 30.8 bits (68), Expect = 0.49
Identities = 16/45 (35%), Positives = 23/45 (50%), Gaps = 5/45 (11%)
Frame = +1
Query: 46 RNKKWEEIRDEYNKR-----ANKNYTQKQLKNRMDTLRGEWTIWK 85
R + W+E+ D N R T Q KNR+DTL+ ++ I K
Sbjct: 274 RQRHWQEVADAVNARHGHVSTKARRTDVQCKNRIDTLKKKYKIEK 408
>AI437639
Length = 236
Score = 29.6 bits (65), Expect = 1.1
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = +2
Query: 19 WDTFSTKMLLDICMVEIHKCGKLGIAFRNKKWEEIRDEYNKRANKNYTQKQLKNRMDTLR 78
W + L+D+ + ++ +LG F ++ W ++ N+ Y LKNR R
Sbjct: 41 WTPXMDRCLIDLLLEQVXHGNRLGQTFISQAWNDMITTXNE*FXSQYDXDVLKNRYKHFR 220
Query: 79 GEW 81
++
Sbjct: 221 KQF 229
>TC208994 similar to UP|Q8W3M8 (Q8W3M8) 6b-interacting protein 1, partial
(32%)
Length = 520
Score = 29.3 bits (64), Expect = 1.4
Identities = 15/52 (28%), Positives = 25/52 (47%), Gaps = 4/52 (7%)
Frame = +3
Query: 46 RNKKWEEIRDEYNK----RANKNYTQKQLKNRMDTLRGEWTIWKQLLGKETG 93
R K W+++ D N + T Q KNR+DT++ ++ I K + G
Sbjct: 270 RQKDWQDVADAVNALHGHTKKTHRTDVQCKNRIDTIKKKYKIEKARVSASNG 425
>BQ741185
Length = 424
Score = 29.3 bits (64), Expect = 1.4
Identities = 10/41 (24%), Positives = 21/41 (50%)
Frame = +3
Query: 13 NLGKAKWDTFSTKMLLDICMVEIHKCGKLGIAFRNKKWEEI 53
N G+ W + +++ + ++ K K+G FR K W ++
Sbjct: 297 NQGRIDWSPMMDQFFVELMVDQVCKGNKIGTTFRRKAWVDM 419
>TC225848 homologue to UP|SUS2_PEA (O24301) Sucrose synthase 2 (Sucrose-UDP
glucosyltransferase 2) , partial (83%)
Length = 2487
Score = 29.3 bits (64), Expect = 1.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 50 WEEIRDEYNKRANKNYTQKQLKNRMDTLRGEWTIWK 85
W++I D +R + YT K R+ TL G ++ WK
Sbjct: 1829 WKKISDGGLQRIYERYTWKIYSERLMTLAGVYSFWK 1936
>TC214902 homologue to UP|Q9AVR8 (Q9AVR8) Sucrose synthase isoform 3 ,
partial (41%)
Length = 1430
Score = 28.5 bits (62), Expect = 2.4
Identities = 13/42 (30%), Positives = 22/42 (51%)
Frame = +1
Query: 50 WEEIRDEYNKRANKNYTQKQLKNRMDTLRGEWTIWKQLLGKE 91
W++I KR ++ YT + +R+ TL G + WK + E
Sbjct: 787 WDKISQGGLKRIHEKYTWQIYSDRLLTLTGVYGFWKHVTNLE 912
>TC228830 similar to GB|AAN28779.1|23505839|AY143840 At4g27320/M4I22_130
{Arabidopsis thaliana;} , partial (62%)
Length = 778
Score = 28.1 bits (61), Expect = 3.2
Identities = 11/24 (45%), Positives = 18/24 (74%)
Frame = +2
Query: 192 KNKRKVSPRMRKQQRVRQRLGLHQ 215
+ +R +PR R Q+ +R+RLGLH+
Sbjct: 269 RRRRDPAPRQRYQRPLRRRLGLHR 340
>TC213701
Length = 490
Score = 27.7 bits (60), Expect = 4.2
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -1
Query: 118 KYAKFRFQGLEFCDE 132
KYA FRF+ LEFCD+
Sbjct: 457 KYALFRFKLLEFCDQ 413
>TC231613 similar to UP|ANX4_FRAAN (P51074) Annexin-like protein RJ4, partial
(64%)
Length = 794
Score = 27.3 bits (59), Expect = 5.4
Identities = 17/45 (37%), Positives = 23/45 (50%), Gaps = 9/45 (20%)
Frame = +3
Query: 42 GIAFRNKKWEEIRDEYNKRAN---------KNYTQKQLKNRMDTL 77
GIA K +E DE++K AN K Y +K L+N M+ L
Sbjct: 318 GIAITKKLSDEGSDEFHKAANLAISCINDHKKYYEKVLRNAMEHL 452
>TC228456 similar to GB|AAM98287.1|22655390|AY142023 At1g51440/F5D21_19
{Arabidopsis thaliana;} , partial (13%)
Length = 736
Score = 27.3 bits (59), Expect = 5.4
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +3
Query: 43 IAFRNKKWEEIRDEYNKRANKNYTQKQLKNRMDTLRGEWTIWKQLLGKETGLGWNHHIGN 102
+A NK + ++DE++ + Q KN + T G W + + L ++ +HH+G
Sbjct: 282 LALVNKDCDFLKDEHS--VPPRWRQDLNKNMVRTEDGRWVLADRPLAQDPHEDIDHHLGE 455
Query: 103 IDADSA 108
+ S+
Sbjct: 456 LGLASS 473
>TC209047 similar to UP|Q6NQK2 (Q6NQK2) At1g25580, partial (19%)
Length = 729
Score = 26.9 bits (58), Expect = 7.1
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 102 NIDADSAWWDAKIRNVKYAKFRFQGLEFCDEL 133
N + WWD++ +N+ ++ + L CD+L
Sbjct: 173 NTEEGQKWWDSESQNLLDSQQLVEALSLCDDL 268
>BE059506 similar to PIR|F86200|F8 protein F12K11.17 [imported] - Arabidopsis
thaliana, partial (5%)
Length = 320
Score = 26.9 bits (58), Expect = 7.1
Identities = 11/32 (34%), Positives = 18/32 (55%)
Frame = +1
Query: 80 EWTIWKQLLGKETGLGWNHHIGNIDADSAWWD 111
+WT WK+ +G G+G I + + +WWD
Sbjct: 235 DWTDWKRWMGNRGGIG----ILSDKSWESWWD 318
>TC218620 similar to UP|Q8GUA8 (Q8GUA8) Ornithine aminotransferase , partial
(49%)
Length = 960
Score = 26.9 bits (58), Expect = 7.1
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = +2
Query: 63 KNYTQ--KQLKNRMDTLRGEWTIWKQLLGKETG 93
++YT + R D L WT WK L K TG
Sbjct: 170 RSYTS*CSSCRQRCDALYTTWTAWKYLRWKSTG 268
>TC214161 weakly similar to GB|AAS76234.1|45752672|BT012139 At3g58850
{Arabidopsis thaliana;} , partial (58%)
Length = 765
Score = 26.9 bits (58), Expect = 7.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 6 SLPNSSENLGKAKWDTFSTKMLLDICMVEIHKCGKLGIAFRNKKWE 51
S P+SSENL K + T +L +CM G G +KW+
Sbjct: 123 SYPHSSENLQKTRTTTTLPPLLTSLCMFSAAAGGGGG-----RKWQ 245
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.132 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,224,271
Number of Sequences: 63676
Number of extensions: 119176
Number of successful extensions: 727
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of query: 216
length of database: 12,639,632
effective HSP length: 93
effective length of query: 123
effective length of database: 6,717,764
effective search space: 826284972
effective search space used: 826284972
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC140104.6