TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139709.19 + phase: 0 
         (353 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC210327 UP|Q6LDZ6 (Q6LDZ6) Photosystem II thylakoid membrane pr...   714  0.0
BE660484 homologue to GP|11022864|gb photosystem II D2 protein {...   133  1e-31
TC214992 homologue to UP|FD62_SOYBN (P48631) Omega-6 fatty acid ...    30  1.7
BM121495 similar to SP|P48631|FD62 Omega-6 fatty acid desaturase...    30  1.7
TC205299 similar to UP|Q940Z9 (Q940Z9) AT4g02580/T10P11_14, part...    30  2.2
CD399608                                                               28  6.3

>TC210327 UP|Q6LDZ6 (Q6LDZ6) Photosystem II thylakoid membrane protein,
           complete
          Length = 1114

 Score =  714 bits (1843), Expect = 0.0
 Identities = 348/353 (98%), Positives = 352/353 (99%)
 Frame = +1

Query: 1   MTAILERRDSENLWSRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERR+SE+LW RFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 19  MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 198

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 199 DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 378

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF
Sbjct: 379 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 558

Query: 181 NFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG 240
           NFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG
Sbjct: 559 NFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG 738

Query: 241 QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGF 300
           QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGF
Sbjct: 739 QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGF 918

Query: 301 NFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEAPSING 353
           NFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAA++APSING
Sbjct: 919 NFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAIDAPSING 1077


>BE660484 homologue to GP|11022864|gb photosystem II D2 protein {Acorus
           calamus}, partial (66%)
          Length = 723

 Score =  133 bits (334), Expect = 1e-31
 Identities = 64/164 (39%), Positives = 103/164 (62%)
 Frame = +3

Query: 139 MRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFH 198
           +RP+ A+A+S P+A   +VFLIYP+GQ  +      G++  F F++ FQ  HN  ++PFH
Sbjct: 3   LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFH 182

Query: 199 MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRL 258
           M+GVAGV G +L  A+HG+ V ++L  E  +  +    +   Q EETY++V A+ ++ ++
Sbjct: 183 MMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQI 359

Query: 259 IFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
                +F+N R LHFF+   PV G+W +ALG+  +A NL  ++F
Sbjct: 360 F--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 485


>TC214992 homologue to UP|FD62_SOYBN (P48631) Omega-6 fatty acid desaturase,
           endoplasmic reticulum isozyme 2  , complete
          Length = 1556

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 177 SGTFNFMIVFQAEHNILMHPFHMLG 201
           SGT N + + QAE ++L+ P H++G
Sbjct: 581 SGTLNTLTILQAESSLLLSPSHLVG 655


>BM121495 similar to SP|P48631|FD62 Omega-6 fatty acid desaturase
           endoplasmic reticulum isozyme 2 (EC 1.14.19.-).
           [Soybean], partial (62%)
          Length = 852

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 177 SGTFNFMIVFQAEHNILMHPFHMLG 201
           SGT N + + QAE ++L+ P H++G
Sbjct: 242 SGTLNTLTILQAESSLLLSPSHLVG 316


>TC205299 similar to UP|Q940Z9 (Q940Z9) AT4g02580/T10P11_14, partial (98%)
          Length = 1232

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 277  AWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWAD 319
            AW  +  W   + +STM +  N    N   +D+  RV  +W D
Sbjct: 1075 AWHALPTWVCRMDLSTMVWENNHVQCNIHFLDNGQRVFRSWHD 1203


>CD399608 
          Length = 668

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 279 PVVGIWFTALGISTMAFNLNGFNFNQSVVDS 309
           P +G+W++ L  S++   + G  F+ S+VDS
Sbjct: 553 PXIGLWYSNLR*SSVLSTILGVKFSGSIVDS 645


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.324    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,876,359
Number of Sequences: 63676
Number of extensions: 241232
Number of successful extensions: 1515
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1514
length of query: 353
length of database: 12,639,632
effective HSP length: 98
effective length of query: 255
effective length of database: 6,399,384
effective search space: 1631842920
effective search space used: 1631842920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)