BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139344.7 + phase: 1 /pseudo
(478 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW311574 172 3e-43
TC207680 similar to UP|Q8HFW9 (Q8HFW9) Cytochrome b (Fragment), ... 32 0.81
TC221590 31 1.1
TC217580 similar to UP|Q84VX5 (Q84VX5) At4g02100, partial (74%) 30 3.1
BU549208 homologue to GP|21637395|gb hedgehog-like protein {Helo... 29 5.3
BI969706 28 6.9
TC207107 weakly similar to UP|O80443 (O80443) Expressed protein,... 28 9.0
TC228787 similar to UP|O82603 (O82603) T2L5.1 protein (Similarit... 28 9.0
BM892523 28 9.0
TC222840 similar to UP|Q6Z4N9 (Q6Z4N9) Epstein-Barr virus EBNA-1... 28 9.0
>AW311574
Length = 432
Score = 172 bits (436), Expect = 3e-43
Identities = 91/132 (68%), Positives = 102/132 (76%), Gaps = 6/132 (4%)
Frame = +2
Query: 353 QTARVLLYLRVIPTLIECLRGPVFGDMVAPTMFLYMEHPNGKVARASHSVFTAFISMGKE 412
QTAR L YLRVIPT IECL VF +MVAPTMFLYMEHPNGKVARASHSVF AF++MGK+
Sbjct: 8 QTARFLFYLRVIPTSIECLPSLVFRNMVAPTMFLYMEHPNGKVARASHSVFMAFMTMGKD 187
Query: 413 SEKIDSLIEGEA---RFLSLSIIILPNTL---GMASGVVGMVRHLPAGSPTTFYCIHSLV 466
SEK D + E ++ S++ P GMASGVVGMV+HLPAGSP FYC+HSLV
Sbjct: 188 SEKNDEVSLKEQLVFHYMQRSLLGYPGITPFEGMASGVVGMVQHLPAGSPAIFYCVHSLV 367
Query: 467 EKANQLCSEVFT 478
EKANQLCSEVFT
Sbjct: 368 EKANQLCSEVFT 403
>TC207680 similar to UP|Q8HFW9 (Q8HFW9) Cytochrome b (Fragment), partial (6%)
Length = 1524
Score = 31.6 bits (70), Expect = 0.81
Identities = 20/49 (40%), Positives = 27/49 (54%), Gaps = 4/49 (8%)
Frame = +1
Query: 124 LQCVTLGMTRTISFSSHSSLFVCLGLSLLTRILP----LPRLYESVFEL 168
+ C T G+ RT SLF+CL L L T ++P LPRL E ++ L
Sbjct: 1000 MTCYTTGIHRTTK-----SLFLCLNLFLRTCLVPFNKNLPRLLEELWHL 1131
>TC221590
Length = 431
Score = 31.2 bits (69), Expect = 1.1
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +1
Query: 3 LFVWNLGKG*W----WASRSCCSWTYGSLFV*LGCVEFD-QFQIFGQSGCFCESFKENYA 57
L VW LG G*W +++CC + +L++ L C+ F+ + I+ G +C+ + +
Sbjct: 166 LLVWYLGTG*WVLTLSVAQNCC*EMH-TLWMILSCLCFNYECVIWSACGAYCDFVQSYFL 342
Query: 58 PF 59
PF
Sbjct: 343 PF 348
>TC217580 similar to UP|Q84VX5 (Q84VX5) At4g02100, partial (74%)
Length = 2139
Score = 29.6 bits (65), Expect = 3.1
Identities = 15/64 (23%), Positives = 32/64 (49%), Gaps = 4/64 (6%)
Frame = +2
Query: 305 METIRKVTAIVKKNENAC----TFFVNSIPSYGDLTNGPDQKTKYFWSKDEVQTARVLLY 360
++T +++ + + E+ C +F+V +IP GD TN P D A++L +
Sbjct: 737 LQTGKRIASAAFRRESVCWSEDSFYVTNIPFSGDSTNAPPSTPPRTLLADSESVAQLLGH 916
Query: 361 LRVI 364
++ +
Sbjct: 917 IKFL 928
>BU549208 homologue to GP|21637395|gb hedgehog-like protein {Helobdella
robusta}, partial (1%)
Length = 647
Score = 28.9 bits (63), Expect = 5.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 385 FLYMEHPNGKVARASHSVFTAFISM 409
F Y+EH NG ++R S +F F SM
Sbjct: 366 FSYIEHSNGSLSRQSALIFQQFASM 292
>BI969706
Length = 620
Score = 28.5 bits (62), Expect = 6.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 323 TFFVNSIPSYGDLTNGPDQKTKYFW 347
T F S+P+YG L P ++ K+FW
Sbjct: 183 TRFALSLPNYGPLDQPPKRQGKHFW 257
>TC207107 weakly similar to UP|O80443 (O80443) Expressed protein, partial
(65%)
Length = 953
Score = 28.1 bits (61), Expect = 9.0
Identities = 15/47 (31%), Positives = 21/47 (43%)
Frame = +1
Query: 298 HVRLPEYMETIRKVTAIVKKNENACTFFVNSIPSYGDLTNGPDQKTK 344
HV L EY+E +RK+ +K + S P D T P+ K
Sbjct: 283 HVPLQEYIENLRKIVNHLKSLSENTRILLLSAPPINDATITPNSDGK 423
>TC228787 similar to UP|O82603 (O82603) T2L5.1 protein (Similarity to
chorismate mutase-T and prephenate dehydrogenase),
partial (28%)
Length = 1008
Score = 28.1 bits (61), Expect = 9.0
Identities = 30/121 (24%), Positives = 48/121 (38%), Gaps = 19/121 (15%)
Frame = +2
Query: 111 FRNLGNDLQDRVLLQCVTLGMTRTISFSSHSSLFVCLGL-------SLLTRILPLPRLYE 163
F N G L ++ Q TL T S S +S L + +G+ + LT + + L
Sbjct: 104 FGNFGQFLAKTMIKQGHTLTAT---SRSDYSELCLQMGIHFFRDVSAFLTADIDVIVLCT 274
Query: 164 SVFELSPSSGGLKVNE------------IKEHPDNILFKEAGAVTGIFCNLYVLADEENK 211
S+ LS G + + +KEHP +L +E + I C + + K
Sbjct: 275 SILSLSEVVGSMPLTSLKRPTLFVDVLSVKEHPRELLLRELPEDSDILCTHPMFGPQTAK 454
Query: 212 N 212
N
Sbjct: 455 N 457
>BM892523
Length = 424
Score = 28.1 bits (61), Expect = 9.0
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = -3
Query: 49 CESFKENYAPFVVFMSGIGVLRVTDRYASS 78
CES+ +NY F + G+LRV Y+SS
Sbjct: 287 CESWGQNYVKLQSFQNKEGILRVKVYYSSS 198
>TC222840 similar to UP|Q6Z4N9 (Q6Z4N9) Epstein-Barr virus EBNA-1-like
protein, partial (5%)
Length = 417
Score = 28.1 bits (61), Expect = 9.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 126 CVTLGMTRTISFSSHSSLFVCLGLSLLTRILPLPRLYESV 165
CV+L ++ ++S SS S LSL + L R++E V
Sbjct: 163 CVSLSLSLSLSLSSKSDAIQLSSLSLSAELRDLRRIFEDV 44
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.326 0.140 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,668,060
Number of Sequences: 63676
Number of extensions: 309944
Number of successful extensions: 2172
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2171
length of query: 478
length of database: 12,639,632
effective HSP length: 101
effective length of query: 377
effective length of database: 6,208,356
effective search space: 2340550212
effective search space used: 2340550212
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC139344.7