BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137824.11 - phase: 0
(316 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC205741 homologue to UP|Q852R1 (Q852R1) Serine palmitoyltransfe... 103 1e-22
TC228770 similar to UP|Q9LZ63 (Q9LZ63) 8-amino-7-oxononanoate sy... 30 1.1
TC226007 similar to UP|Q8LC13 (Q8LC13) Remorin, partial (65%) 30 1.1
BF424850 29 2.4
TC221739 similar to UP|S132_ARATH (Q8VZU2) Syntaxin 132 (AtSYP13... 29 3.2
TC214193 similar to UP|Q8RU73 (Q8RU73) Ribose-5-phosphate isomer... 28 7.1
TC208396 similar to GB|AAQ62419.1|34146822|BT010418 At4g05400 {A... 28 7.1
TC213266 27 9.3
TC221850 weakly similar to PIR|T05606|T05606 protein kinase homo... 27 9.3
TC229700 homologue to UP|Q9FS22 (Q9FS22) CpABA1 protein, partial... 27 9.3
>TC205741 homologue to UP|Q852R1 (Q852R1) Serine palmitoyltransferase,
complete
Length = 2191
Score = 103 bits (257), Expect = 1e-22
Identities = 66/200 (33%), Positives = 99/200 (49%), Gaps = 4/200 (2%)
Frame = +3
Query: 112 VNFASANYLGLIGHQKLLDS-CSSALEKYGVGSCGPRGFYGTIDVHLDCEGRISKFLGTP 170
+N S NYLG + L+KY +C R GT +HL+ E ++ F+G P
Sbjct: 468 LNLGSYNYLGFAAADEYCTPRVVDTLKKYSPSTCSTRVDGGTTVLHLELEECVANFVGKP 647
Query: 171 DSILYSYGLSTMFSAIPAFSKKGDIIVADEGVHWGIQNGLYLSRSTVVYFKHNNMDSLRE 230
+I++ G T + +P KG +I++D H I NG S +T+ F+HN L E
Sbjct: 648 AAIVFGMGYVTNSAILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNEPSHLEE 827
Query: 231 TL-ENITSIYKRTKN--LRRYIVIEALYQNSGQIAPLDEIIKLKEKYCFRILLDESNSFG 287
L E I RT + +V+E +Y G++ L E+I + +KY LDE++S G
Sbjct: 828 VLREQIAEGQPRTHRPWKKIMVVVEGIYSMEGELCKLPEVIAVCKKYKAYTYLDEAHSIG 1007
Query: 288 VLGSSGRGLTEHYGVPVCRV 307
+G SGRG+ E GV V
Sbjct: 1008AVGKSGRGVCELLGVDTADV 1067
>TC228770 similar to UP|Q9LZ63 (Q9LZ63) 8-amino-7-oxononanoate synthase-like
protein, partial (62%)
Length = 1219
Score = 30.4 bits (67), Expect = 1.1
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = +1
Query: 83 PSLNDEMPYEPPVLESAAGPHTIVNGKEVVNFASANYLGLIGHQKLLDSCSSALEKYGVG 142
PS DE+ V AG + K+++ F+ +YLGL H + + + A +++G+G
Sbjct: 148 PSSGDEIVCSAAVGGDEAGA-SYEKFKKLILFSGNDYLGLSSHPTIGKAAAKAAQEHGMG 324
Query: 143 SCGPRGFYGTIDVH 156
G G + H
Sbjct: 325 PRGSALICGYTNYH 366
>TC226007 similar to UP|Q8LC13 (Q8LC13) Remorin, partial (65%)
Length = 951
Score = 30.4 bits (67), Expect = 1.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 276 FRILLDESNSFGVLGSSGRGLTEHYGVPVCRVIFWRSRLF 315
F LL+ SFG++ GRGL +Y +C ++ W + F
Sbjct: 402 FTSLLNYDKSFGLISRRGRGLW-NYRFLLCHILLWNNNRF 286
>BF424850
Length = 364
Score = 29.3 bits (64), Expect = 2.4
Identities = 15/37 (40%), Positives = 20/37 (53%), Gaps = 3/37 (8%)
Frame = +2
Query: 115 ASANYLGLIGH---QKLLDSCSSALEKYGVGSCGPRG 148
A NYLG + H +KL+ CS ++ V C PRG
Sbjct: 158 AEVNYLGQLSHPHLEKLIGYCSEDKDRLLVYECMPRG 268
>TC221739 similar to UP|S132_ARATH (Q8VZU2) Syntaxin 132 (AtSYP132), partial
(31%)
Length = 502
Score = 28.9 bits (63), Expect = 3.2
Identities = 17/48 (35%), Positives = 27/48 (55%)
Frame = -2
Query: 4 SFINFVNTTIDLVTYALHAPSARAVVFGFNIGGHLFIEVLLLVVILFL 51
SF+NF+N + + Y+LH S FGF +G + L+ + ILF+
Sbjct: 408 SFLNFINIFLHSLLYSLHGRSF-GHSFGFLMGILELFQKLIQLSILFI 268
>TC214193 similar to UP|Q8RU73 (Q8RU73) Ribose-5-phosphate isomerase
precursor , partial (37%)
Length = 601
Score = 27.7 bits (60), Expect = 7.1
Identities = 14/37 (37%), Positives = 18/37 (47%), Gaps = 1/37 (2%)
Frame = +3
Query: 59 PPKRPLSNKEIDELCDEWVPQPLIPSLNDEM-PYEPP 94
PP RP S W P PL+PS + + P+ PP
Sbjct: 306 PPTRPWSPSRA-AWSSAWAPAPLLPSSSPSLAPFSPP 413
>TC208396 similar to GB|AAQ62419.1|34146822|BT010418 At4g05400 {Arabidopsis
thaliana;} , partial (67%)
Length = 891
Score = 27.7 bits (60), Expect = 7.1
Identities = 22/71 (30%), Positives = 27/71 (37%), Gaps = 3/71 (4%)
Frame = -1
Query: 51 LLSQKSYKPPKRPLSNKEIDELCDEWVPQPLIPSLNDEMPYEPPVLESAAGP---HTIVN 107
L+S KP P S+ D W PQP+ P + PY P S+ P HT
Sbjct: 666 LISTPQAKPQ*PPPSSSSKD-----WTPQPVSPYASSSKPYYTPSPTSSHLPPSNHTSAT 502
Query: 108 GKEVVNFASAN 118
N S N
Sbjct: 501 CPHPPNLNSRN 469
>TC213266
Length = 712
Score = 27.3 bits (59), Expect = 9.3
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Frame = -1
Query: 32 FNIGGHLFIEVLLLVVILFLLSQK--------SYKPPKRPLSNKEID 70
FNIGGHL EVL L +I+F ++ P +R L+N+ ++
Sbjct: 712 FNIGGHLRGEVLRLDLIIFTDGREHDGQIPILPLHPRRRRLANRNLN 572
>TC221850 weakly similar to PIR|T05606|T05606 protein kinase homolog
F9D16.210 - Arabidopsis thaliana {Arabidopsis thaliana;}
, partial (11%)
Length = 487
Score = 27.3 bits (59), Expect = 9.3
Identities = 10/18 (55%), Positives = 11/18 (60%)
Frame = +1
Query: 59 PPKRPLSNKEIDELCDEW 76
PP RPL+ E LCD W
Sbjct: 316 PPSRPLNWNESSPLCDSW 369
>TC229700 homologue to UP|Q9FS22 (Q9FS22) CpABA1 protein, partial (34%)
Length = 947
Score = 27.3 bits (59), Expect = 9.3
Identities = 12/42 (28%), Positives = 25/42 (58%)
Frame = +1
Query: 34 IGGHLFIEVLLLVVILFLLSQKSYKPPKRPLSNKEIDELCDE 75
+GG F+++++ ++ ++L S K RPLS + D+ D+
Sbjct: 55 VGGRFFVDIMMPSMLSWVLGGNSDKLEGRPLSCRLTDKANDQ 180
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.141 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,851,278
Number of Sequences: 63676
Number of extensions: 227201
Number of successful extensions: 1067
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of query: 316
length of database: 12,639,632
effective HSP length: 97
effective length of query: 219
effective length of database: 6,463,060
effective search space: 1415410140
effective search space used: 1415410140
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Medicago: description of AC137824.11