BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137509.6 - phase: 0 /pseudo
(85 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BQ272766 weakly similar to GP|28558781|gb| pol protein {Cucumis ... 110 1e-25
BU549069 72 6e-14
TC211973 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, parti... 57 2e-09
NP595172 polyprotein [Glycine max] 54 1e-08
TC211627 52 4e-08
TC213114 weakly similar to UP|Q8W150 (Q8W150) Polyprotein, parti... 50 2e-07
TC212592 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, parti... 38 0.001
TC213413 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, parti... 35 0.005
TC215225 UP|Q9FVC3 (Q9FVC3) Apyrase GS50 (Fragment), complete 33 0.025
BE807407 29 0.36
TC232772 weakly similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial ... 27 1.4
AW234303 25 5.2
BM139741 25 5.2
TC205339 weakly similar to UP|Q6QDB6 (Q6QDB6) UDP-glucose glucos... 25 5.2
TC230367 25 6.8
TC215579 25 6.8
TC213767 25 6.8
TC210026 homologue to UP|Q9LXT8 (Q9LXT8) Pre-mRNA splicing facto... 25 6.8
TC218050 weakly similar to UP|Q7PC82 (Q7PC82) PDR14 ABC transpor... 25 8.9
>BQ272766 weakly similar to GP|28558781|gb| pol protein {Cucumis melo},
partial (9%)
Length = 410
Score = 110 bits (275), Expect = 1e-25
Identities = 51/71 (71%), Positives = 62/71 (86%)
Frame = -3
Query: 10 SYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKVGVVAYRIAL 69
SYHDKRRKD+E++VGDHVFLRV P TGVGRALK K TP F+GPF +++KV VAY+IAL
Sbjct: 408 SYHDKRRKDLEFEVGDHVFLRVTP*TGVGRALKS*KLTPHFIGPFQILKKVDFVAYQIAL 229
Query: 70 PPSLSNLHDVF 80
PPSL++LH+VF
Sbjct: 228 PPSLTSLHNVF 196
>BU549069
Length = 615
Score = 71.6 bits (174), Expect = 6e-14
Identities = 33/52 (63%), Positives = 42/52 (80%)
Frame = -1
Query: 29 LRVNPMTGVGRALKCRKSTPCFVGPFDVIEKVGVVAYRIALPPSLSNLHDVF 80
L+V P TGVG+ALK RK TP F+G F ++++ VAY+IALPPSLSNLH+VF
Sbjct: 615 LKVTPRTGVGQALKSRKLTPHFIGHFQILKRAXPVAYQIALPPSLSNLHNVF 460
>TC211973 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, partial (4%)
Length = 730
Score = 56.6 bits (135), Expect = 2e-09
Identities = 31/69 (44%), Positives = 42/69 (59%), Gaps = 1/69 (1%)
Frame = +1
Query: 13 DKRRKDIEYQVGDHVFLRVNPMTGVGRALKC-RKSTPCFVGPFDVIEKVGVVAYRIALPP 71
+KRR+DIEY VGD VFL++ P A + K +P F PF V KVG +AY++ LP
Sbjct: 112 NKRRRDIEYVVGD*VFLKMQPYRRRSLAKRINEKLSPRFYAPFQVFNKVGTIAYKLDLPS 291
Query: 72 SLSNLHDVF 80
+ +H VF
Sbjct: 292 HI-KIHPVF 315
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 54.3 bits (129), Expect = 1e-08
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +1
Query: 4 SQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRAL-KCRKSTPCFVGPFDVIEKVGV 62
+Q K DK+R D+ +Q+GD V +++ P L K +K + + GPF V+ K+G
Sbjct: 4003 AQQVMKRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVLRKNQKLSMRYFGPFKVLAKIGD 4182
Query: 63 VAYRIALPPSLSNLHDVF 80
VAY++ L PS + +H VF
Sbjct: 4183 VAYKLEL-PSAARIHPVF 4233
>TC211627
Length = 1034
Score = 52.4 bits (124), Expect = 4e-08
Identities = 26/76 (34%), Positives = 41/76 (53%)
Frame = +3
Query: 5 QSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKVGVVA 64
Q K D R+D+ + +GD V++R+ P K + F GP+ + +VG VA
Sbjct: 372 QDSMKRIADSHRRDLTFNIGDWVYVRL*PYRQTSIQSTYTKLSKRFYGPYQIQARVGQVA 551
Query: 65 YRIALPPSLSNLHDVF 80
YR+ LPP+ S +H +F
Sbjct: 552 YRLQLPPT-SKIHPIF 596
>TC213114 weakly similar to UP|Q8W150 (Q8W150) Polyprotein, partial (7%)
Length = 810
Score = 50.1 bits (118), Expect = 2e-07
Identities = 26/73 (35%), Positives = 44/73 (59%), Gaps = 1/73 (1%)
Frame = +3
Query: 9 KSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCR-KSTPCFVGPFDVIEKVGVVAYRI 67
K+Y D+ R+ + VGD V+L++ P A K K +P F GP+ + +++G+VA+ +
Sbjct: 6 KAYADRSRRAVTLSVGDWVYLKLQPYRLKSLAKKRNEKLSPRFYGPYQIKKQIGLVAFEL 185
Query: 68 ALPPSLSNLHDVF 80
LPP+ +H VF
Sbjct: 186DLPPA-RKIHPVF 221
>TC212592 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, partial (4%)
Length = 664
Score = 37.7 bits (86), Expect = 0.001
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = +2
Query: 50 FVGPFDVIEKVGVVAYRIALPPSLSNLHDVF 80
F GPF V+E+VG VAYR+ LP + LH VF
Sbjct: 89 FFGPFQVVERVGKVAYRLQLPVD-AKLHPVF 178
>TC213413 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, partial (5%)
Length = 761
Score = 35.4 bits (80), Expect = 0.005
Identities = 21/59 (35%), Positives = 32/59 (53%), Gaps = 1/59 (1%)
Frame = +1
Query: 23 VGDHVFLRVNP-MTGVGRALKCRKSTPCFVGPFDVIEKVGVVAYRIALPPSLSNLHDVF 80
+GD V +++ P G K T + GPF+V E++G V YR+ L + S +H VF
Sbjct: 4 IGDWVLVKLRPHRQGSASETTYSKLTKRYYGPFEVQERLGKVVYRLKL-TAHSRIHPVF 177
>TC215225 UP|Q9FVC3 (Q9FVC3) Apyrase GS50 (Fragment), complete
Length = 1786
Score = 33.1 bits (74), Expect = 0.025
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +3
Query: 20 EYQVGDHVFLRVNPMTGVGRALKCRKS-TPCFVGPFDVIEKVGVVAYRIALPP---SLSN 75
+Y + H +LR + ALK R S PC + FD G V Y+ PP S S
Sbjct: 753 KYYLYVHSYLRYGMLAARAEALKVRDSENPCILAGFDGYYVYGGVQYKAKAPPSGSSFSQ 932
Query: 76 LHDVFVE 82
+V VE
Sbjct: 933 CQNVVVE 953
>BE807407
Length = 341
Score = 29.3 bits (64), Expect = 0.36
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 45 KSTPCFVGPFDVIEKVGVVAYRIALP 70
K T + GP+ V+ KVGVVA+++ LP
Sbjct: 158 KLTARYYGPYLVLIKVGVVAFQLQLP 235
>TC232772 weakly similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (7%)
Length = 729
Score = 27.3 bits (59), Expect = 1.4
Identities = 16/58 (27%), Positives = 29/58 (49%)
Frame = +1
Query: 13 DKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKVGVVAYRIALP 70
+K RK + + D V++ + + + K P GPF V+E++ AY+I +P
Sbjct: 241 NKNRKKVVLEPSDWVWVHMRKERFPKQRMS--KLQPRGDGPFQVLERINYNAYKIDIP 408
>AW234303
Length = 398
Score = 25.4 bits (54), Expect = 5.2
Identities = 13/31 (41%), Positives = 17/31 (53%), Gaps = 1/31 (3%)
Frame = +1
Query: 12 HDKRRKDIEY-QVGDHVFLRVNPMTGVGRAL 41
HDK K +Y Q G HV+ +N + RAL
Sbjct: 274 HDKTSKGQDYYQEGSHVYAELNVLEAFRRAL 366
>BM139741
Length = 473
Score = 25.4 bits (54), Expect = 5.2
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +2
Query: 41 LKCRKSTPCFVGPFDVIEKVGVVAY 65
++ +K++PC + PFD++E ++AY
Sbjct: 101 IQIQKTSPCCLIPFDLMELCYLLAY 175
>TC205339 weakly similar to UP|Q6QDB6 (Q6QDB6) UDP-glucose glucosyltransferase,
partial (55%)
Length = 1537
Score = 25.4 bits (54), Expect = 5.2
Identities = 8/18 (44%), Positives = 13/18 (71%)
Frame = +3
Query: 36 GVGRALKCRKSTPCFVGP 53
G+ R+ +CR+ +PC GP
Sbjct: 1119 GIPRSKQCRRGSPCSPGP 1172
>TC230367
Length = 1152
Score = 25.0 bits (53), Expect = 6.8
Identities = 12/34 (35%), Positives = 17/34 (49%)
Frame = +2
Query: 36 GVGRALKCRKSTPCFVGPFDVIEKVGVVAYRIAL 69
G+ CR PCF+ F +E +GV R+ L
Sbjct: 5 GIVLRCSCRLD*PCFLAGFWRMEPIGVSLNRVFL 106
>TC215579
Length = 808
Score = 25.0 bits (53), Expect = 6.8
Identities = 10/21 (47%), Positives = 12/21 (56%)
Frame = -3
Query: 37 VGRALKCRKSTPCFVGPFDVI 57
VGR C K T CFV +D +
Sbjct: 125 VGRVPSCHKGTHCFVLQYDTM 63
>TC213767
Length = 748
Score = 25.0 bits (53), Expect = 6.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 71 PSLSNLHDVFVEEVC 85
P SNLHD+F++ C
Sbjct: 484 PQFSNLHDIFLQIAC 440
>TC210026 homologue to UP|Q9LXT8 (Q9LXT8) Pre-mRNA splicing factor
ATP-dependent RNA helicase-like protein, partial (20%)
Length = 750
Score = 25.0 bits (53), Expect = 6.8
Identities = 9/28 (32%), Positives = 14/28 (49%)
Frame = +2
Query: 34 MTGVGRALKCRKSTPCFVGPFDVIEKVG 61
+ GVG + CR PC + P + +G
Sbjct: 659 LKGVGEYVNCRNGMPCHLHPSSALYGMG 742
>TC218050 weakly similar to UP|Q7PC82 (Q7PC82) PDR14 ABC transporter, partial
(28%)
Length = 1436
Score = 24.6 bits (52), Expect = 8.9
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2
Query: 9 KSYHDKRRKDIEYQV 23
+S+H+K RK+IEY V
Sbjct: 1054 RSWHEKSRKEIEYGV 1010
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.324 0.139 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,744,374
Number of Sequences: 63676
Number of extensions: 42209
Number of successful extensions: 171
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of query: 85
length of database: 12,639,632
effective HSP length: 61
effective length of query: 24
effective length of database: 8,755,396
effective search space: 210129504
effective search space used: 210129504
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)
Medicago: description of AC137509.6