TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136450.2 + phase: 0 /pseudo
         (198 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CF920770                                                               89  2e-18
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete              72  2e-13
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co...    70  6e-13
NP004897 gag-protease polyprotein                                      69  1e-12
TC223814                                                               34  0.050
BG789464 similar to GP|16508162|g type IIB calcium ATPase {Medic...    28  3.6
AW570169                                                               28  3.6
TC209994 similar to UP|Q94CL9 (Q94CL9) Cyclin-dependent kinase i...    27  4.7

>CF920770 
          Length = 581

 Score = 88.6 bits (218), Expect = 2e-18
 Identities = 45/136 (33%), Positives = 79/136 (58%)
 Frame = -2

Query: 62  RRKHTPAQKKLYKKHHTIRGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREA 121
           R + +   +K  + +   +  +  A+   EY ++S+  +AK M+ +L   +EG+  V+ +
Sbjct: 463 RDRWSEEDRKRVQYNLKAKNIITSALGMDEYFRVSNCKSAKEMWDTLRLTHEGTTDVKRS 284

Query: 122 KALMLVHQYELFKMKDGESIEQMYSRFHTLVSGLQILKKSCVASDHVSKILRSLPARWRP 181
           +   L H+YELF+M   E+I+ M  RF  +V+ L  L K     D ++K+LR L   W+P
Sbjct: 283 RINALTHEYELFRMNTNENIQSMQKRFTHIVNHLAALGKEFQNEDLINKVLRCLSREWQP 104

Query: 182 KVTAIEETKDLNTLSV 197
           KVTAI E++DL+ +S+
Sbjct: 103 KVTAISESRDLSNMSL 56


>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
          Length = 4731

 Score = 72.0 bits (175), Expect = 2e-13
 Identities = 51/185 (27%), Positives = 84/185 (44%), Gaps = 5/185 (2%)
 Frame = +1

Query: 18  DLEEFS*WKTNFYNHVMSLDEELWD-ILEGGIGDLVVDEEGADVDRRKH----TPAQKKL 72
           D   +  WK      + SLD   W  +++G     ++D EG   D  K     T  + +L
Sbjct: 49  DGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDEL 228

Query: 73  YKKHHTIRGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREAKALMLVHQYEL 132
              +     AL   + K  +  ++  + AK  +  L   +EG+ KV+ ++  +L  ++E 
Sbjct: 229 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFEN 408

Query: 133 FKMKDGESIEQMYSRFHTLVSGLQILKKSCVASDHVSKILRSLPARWRPKVTAIEETKDL 192
            KMK+ E I   +     + +    L +       V KILRSLP R+  KVTAIEE +D+
Sbjct: 409 LKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDI 588

Query: 193 NTLSV 197
             + V
Sbjct: 589 CNMRV 603


>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
          Length = 4734

 Score = 70.1 bits (170), Expect = 6e-13
 Identities = 49/178 (27%), Positives = 82/178 (45%), Gaps = 5/178 (2%)
 Frame = +1

Query: 25  WKTNFYNHVMSLDEELWD-ILEGGIGDLVVDEEGADVDRRKH----TPAQKKLYKKHHTI 79
           WK      + SLD   W  +++G     ++D EG   +  K     T  + +L   +   
Sbjct: 70  WKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKA 249

Query: 80  RGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREAKALMLVHQYELFKMKDGE 139
             AL   + K  +  ++  + AK  +  L   +EG+ KV+ ++  +L  ++E  KMK+ E
Sbjct: 250 LNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEE 429

Query: 140 SIEQMYSRFHTLVSGLQILKKSCVASDHVSKILRSLPARWRPKVTAIEETKDLNTLSV 197
            I   +     + +    L +       V KILRSLP R+  KVTAIEE +D+  + V
Sbjct: 430 CIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRV 603


>NP004897 gag-protease polyprotein
          Length = 1923

 Score = 69.3 bits (168), Expect = 1e-12
 Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 5/178 (2%)
 Frame = +1

Query: 25  WKTNFYNHVMSLDEELWD-ILEGGIGDLVVDEEGADVDRRKH----TPAQKKLYKKHHTI 79
           WK      + SLD   W  +++      ++D EG   D  K     T  + +L   +   
Sbjct: 70  WKARMVAFLKSLDSRTWKAVIKDWEHPKMLDTEGKPTDGLKPEEDWTKEEDELALGNSKA 249

Query: 80  RGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREAKALMLVHQYELFKMKDGE 139
             AL   + K  +  ++  + AK  +  L   +EG+ KV+ ++  +L  ++E  KMK+ E
Sbjct: 250 LNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEE 429

Query: 140 SIEQMYSRFHTLVSGLQILKKSCVASDHVSKILRSLPARWRPKVTAIEETKDLNTLSV 197
            I   +     + +    L +       V KILRSLP R+  KVTAIEE +D+  L V
Sbjct: 430 CIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNLRV 603


>TC223814 
          Length = 607

 Score = 33.9 bits (76), Expect = 0.050
 Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
 Frame = +1

Query: 146 SRFHTLVSGLQILKKS-CVASDHVSKILRSLPARWRPKVTAIEETKDLNTLSVQ 198
           S+   +++ L+ L K+     DH++KIL+SL  + RP V A+ ++KDL +L V+
Sbjct: 223 SKVQNIMNNLRSLSKT*DNHDDHITKILQSLLIQ*RP*VIALCDSKDLKSLPVE 384


>BG789464 similar to GP|16508162|g type IIB calcium ATPase {Medicago
           truncatula}, partial (10%)
          Length = 395

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 9/51 (17%)
 Frame = +1

Query: 58  ADVDRRKHTPAQKKLYKKHHTIR---------GALVKAIPKAEYMKMSDKS 99
           AD+ +RKH  A+ K  K   TIR         G  + A+P+AEY K+S+K+
Sbjct: 121 ADLVKRKH--AEDKRRKIQSTIRTVFNVKWVEGQFISALPQAEY-KVSEKT 264


>AW570169 
          Length = 366

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 160 KSCVASDHVSKILRSLPARWRPKVTAI 186
           + C ASD  S   RSLP RW P+ TA+
Sbjct: 188 RGCGASDQPSG--RSLPERWIPETTAL 114


>TC209994 similar to UP|Q94CL9 (Q94CL9) Cyclin-dependent kinase inhibitor 7,
           partial (24%)
          Length = 991

 Score = 27.3 bits (59), Expect = 4.7
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 140 SIEQMYSRFHTLVSGLQILKKSCVASDHVSKILRSLPARWRPK-VTAIEETKDLN 193
           S E  +S   T+VSG     +SC +S HV K L S+P+  + K    +E++  LN
Sbjct: 240 SPEVSFSSACTVVSGEFCSDRSCCSSSHV-KDLHSVPSDLQTKGFETVEDSTSLN 401


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.319    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,625,747
Number of Sequences: 63676
Number of extensions: 86513
Number of successful extensions: 439
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of query: 198
length of database: 12,639,632
effective HSP length: 92
effective length of query: 106
effective length of database: 6,781,440
effective search space: 718832640
effective search space used: 718832640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)