TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136138.6 - phase: 0 /pseudo
         (339 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC223666 UP|O81532 (O81532) Mariner transposase, complete             546  e-176
TC224438 weakly similar to UP|Q6ZXS4 (Q6ZXS4) Inwardly rectifyin...    31  0.92
TC206682 similar to UP|Q8GS71 (Q8GS71) Kinesin-like protein, par...    30  1.6
TC216960 similar to GB|BAD02931.1|38603660|AB119061 GATA-type zi...    28  4.5
TC216962 similar to UP|Q6J3Q5 (Q6J3Q5) Male-specific transcripti...    28  4.5

>TC223666 UP|O81532 (O81532) Mariner transposase, complete
          Length = 1278

 Score =  546 bits (1408), Expect(2) = e-176
 Identities = 271/284 (95%), Positives = 276/284 (96%)
 Frame = +1

Query: 7   VRTLVVAMNTNTSAVYRLIL*GAIQRHSSAIKPQLTEEGKRLRLEFCLSMLEGIPHDPMF 66
           VRTL VAM TNTSA+YRLI  GAI+RHSSAIKPQLTEEGKRLRLEFCLSMLEGIPHDPMF
Sbjct: 280 VRTLAVAMKTNTSAMYRLIQSGAIKRHSSAIKPQLTEEGKRLRLEFCLSMLEGIPHDPMF 459

Query: 67  KSMYNIIHIDEKWFYMTKKSERYYLLPDEDKPHRSCKSKNFVPKVMFLTVVARPRFDSEK 126
           +SMYNIIHIDEKWFYMTKKSERYYLLPDEDKPHRSCKSKNFVPKVMFLT VARPRFDSEK
Sbjct: 460 QSMYNIIHIDEKWFYMTKKSERYYLLPDEDKPHRSCKSKNFVPKVMFLTAVARPRFDSEK 639

Query: 127 NVTFSGKIGIFPFVTQEPAKRTSVNRVAGTMETKAITSINRDLIRSFLIEKVLPATKEVW 186
           NVTFSGKIGIFPFVTQEPAKRTSVNRVAGTMETKAITSINRDLIRS  IEKVLPATKEVW
Sbjct: 640 NVTFSGKIGIFPFVTQEPAKRTSVNRVAGTMETKAITSINRDLIRSVFIEKVLPATKEVW 819

Query: 187 LRDELGSTIFIQQDNARTHINPNDPEFIQAATQDGFDIRLMCQPPNSPDFNVLDLGFFSA 246
            RDELGSTIFIQQDNARTHINP+DPEF+QAATQDGFDIRLMCQPPNSPDFNVLDLGFFSA
Sbjct: 820 PRDELGSTIFIQQDNARTHINPDDPEFVQAATQDGFDIRLMCQPPNSPDFNVLDLGFFSA 999

Query: 247 IQSLHYKEAPKTIDELVNAVVKSFENYCVVKSNFIFLSLQLCMI 290
           IQSLHYKEAPKTIDELVNAVVKSFENYCVVKSNFIFLSLQLCMI
Sbjct: 1000IQSLHYKEAPKTIDELVNAVVKSFENYCVVKSNFIFLSLQLCMI 1131



 Score = 90.9 bits (224), Expect(2) = e-176
 Identities = 45/53 (84%), Positives = 48/53 (89%)
 Frame = +3

Query: 287  LCMIHDRDNESQRFQ*ISISTYAEGKIRKRRTTAHSIEV*PNISARNFGLLKQ 339
            + ++HDRDNESQRFQ*I IS YAEGKIR RRTT HSIEV*PNISARNFGLLKQ
Sbjct: 1113 IAVMHDRDNESQRFQ*IYISAYAEGKIRNRRTTTHSIEV*PNISARNFGLLKQ 1271


>TC224438 weakly similar to UP|Q6ZXS4 (Q6ZXS4) Inwardly rectifying potassium
           channel subunit, partial (12%)
          Length = 896

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = -2

Query: 222 FDIRLMCQPPNSPDFNVLDLGFFSAIQSLHYKEAPKTIDELVNAVVKSFENYCVVKS-NF 280
           F   L CQ P  P  N+L +     + SL YKE        VN +  SF NYC +KS   
Sbjct: 202 FAFTLFCQNPWCPPINILHVN----VCSLVYKE--------VNHLSVSF-NYCSMKSCGS 62

Query: 281 IFLSLQLCMIH 291
           IF   +LC IH
Sbjct: 61  IF--FRLCHIH 35


>TC206682 similar to UP|Q8GS71 (Q8GS71) Kinesin-like protein, partial (19%)
          Length = 1266

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 238  VLDLGFFSAIQSLHYKEAPKTIDELVNAVVKSFENYCVVKSNFIFLSLQLCM 289
            +LD  +   I S+H     K  ++   + VKS+E YCV+ S    L+L LC+
Sbjct: 958  ILDRNYLWKIVSVHTNTTKKQWED---SFVKSWEAYCVLYSVLQTLTLLLCL 1104


>TC216960 similar to GB|BAD02931.1|38603660|AB119061 GATA-type zinc finger
           protein {Arabidopsis thaliana;} , partial (14%)
          Length = 585

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 17/46 (36%), Positives = 26/46 (55%)
 Frame = +3

Query: 116 VVARPRFDSEKNVTFSGKIGIFPFVTQEPAKRTSVNRVAGTMETKA 161
           VVA P   SE  ++F G++ +FP VT  P K  +V  + G  + +A
Sbjct: 339 VVAMPSRTSELTLSFEGEVYVFPAVT--PQKVQAVLLLLGGRDVQA 470


>TC216962 similar to UP|Q6J3Q5 (Q6J3Q5) Male-specific transcription factor
           M88B7.2, partial (31%)
          Length = 1446

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 18/56 (32%), Positives = 28/56 (49%)
 Frame = +3

Query: 106 NFVPKVMFLTVVARPRFDSEKNVTFSGKIGIFPFVTQEPAKRTSVNRVAGTMETKA 161
           N    V    VVA P   SE  ++F G++ +FP +T  P K  +V  + G  + +A
Sbjct: 303 NAAASVNHEAVVAMPSRTSELTLSFEGEVYVFPAIT--PQKVQAVLLLLGGRDVQA 464


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.327    0.140    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,520,851
Number of Sequences: 63676
Number of extensions: 176121
Number of successful extensions: 1006
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of query: 339
length of database: 12,639,632
effective HSP length: 98
effective length of query: 241
effective length of database: 6,399,384
effective search space: 1542251544
effective search space used: 1542251544
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)