BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135565.4 - phase: 0
(137 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC224557 homologue to UP|RS24_ARATH (Q9SS17) 40S ribosomal prote... 266 2e-72
TC224701 homologue to PRF|1909359A.0|445612|1909359A ribosomal p... 263 2e-71
TC224807 homologue to PRF|1909359A.0|445612|1909359A ribosomal p... 263 3e-71
TC224817 homologue to PRF|1909359A.0|445612|1909359A ribosomal p... 198 6e-52
TC224763 similar to PRF|1909359A.0|445612|1909359A ribosomal pro... 128 1e-51
BQ741899 189 3e-49
AW471914 135 6e-33
BE803241 similar to GP|28564876|gb| RPS24 {Saccharomyces castell... 114 1e-26
BE803313 weakly similar to GP|27883560|gb| ribosomal protein S24... 99 6e-22
AI442065 weakly similar to SP|Q9SS17|RS24_ 40S ribosomal protein... 54 2e-08
AI794922 homologue to SP|Q9SS17|RS24_ 40S ribosomal protein S24.... 51 2e-07
CO983030 35 0.015
TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%) 31 0.21
AW101589 GP|21104742|db OJ1117_G01.13 {Oryza sativa (japonica cu... 30 0.36
TC207814 similar to UP|Q75XU7 (Q75XU7) RIO kinase, partial (43%) 28 1.0
TC230829 weakly similar to UP|Q9LDH1 (Q9LDH1) SigA binding prote... 28 1.4
CK605837 28 1.4
TC206344 28 1.4
TC223840 similar to GB|AAR92297.1|40823665|BT011261 At2g45860 {A... 28 1.8
TC207029 weakly similar to UP|Q7R8E7 (Q7R8E7) Ran-binding protei... 28 1.8
>TC224557 homologue to UP|RS24_ARATH (Q9SS17) 40S ribosomal protein S24,
complete
Length = 1463
Score = 266 bits (681), Expect = 2e-72
Identities = 132/137 (96%), Positives = 136/137 (98%)
Frame = +2
Query: 1 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVF 60
MADKAVTIRTRKFMTNRLLSRKQFV+DVLHPGRANVSKAELKEKLAR+YDVKDPNTVFVF
Sbjct: 692 MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLARMYDVKDPNTVFVF 871
Query: 61 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLVRNGLDTKVEKSRKQMKERKNRAKKIR 120
KFRTHFGGGKSTGFGLIYD+VENAKKYEPKYRL+RNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 872 KFRTHFGGGKSTGFGLIYDTVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 1051
Query: 121 GVKKTKAGDAAKAGKKK 137
GVKKTKA DAAKAGKKK
Sbjct: 1052GVKKTKASDAAKAGKKK 1102
>TC224701 homologue to PRF|1909359A.0|445612|1909359A ribosomal protein S19.
{Solanum tuberosum;} , complete
Length = 849
Score = 263 bits (672), Expect = 2e-71
Identities = 131/137 (95%), Positives = 134/137 (97%)
Frame = +2
Query: 1 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVF 60
MADKAVTIRTRKFMTNRLLSRKQFV+DVLHPGRANVSKAELKEKL R+YDVKD NTVFVF
Sbjct: 125 MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLGRMYDVKDTNTVFVF 304
Query: 61 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLVRNGLDTKVEKSRKQMKERKNRAKKIR 120
KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRL+RNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 305 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 484
Query: 121 GVKKTKAGDAAKAGKKK 137
GVKKTKA DAAKAGKKK
Sbjct: 485 GVKKTKASDAAKAGKKK 535
>TC224807 homologue to PRF|1909359A.0|445612|1909359A ribosomal protein S19.
{Solanum tuberosum;} , complete
Length = 955
Score = 263 bits (671), Expect = 3e-71
Identities = 130/137 (94%), Positives = 134/137 (96%)
Frame = +3
Query: 1 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVF 60
MADKAVTIRTRKFMTNRLLSRKQF++DVLHPGRANVSKAELKEKL R+YDVKD NTVFVF
Sbjct: 141 MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLGRMYDVKDTNTVFVF 320
Query: 61 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLVRNGLDTKVEKSRKQMKERKNRAKKIR 120
KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRL+RNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 321 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 500
Query: 121 GVKKTKAGDAAKAGKKK 137
GVKKTKA DAAKAGKKK
Sbjct: 501 GVKKTKASDAAKAGKKK 551
>TC224817 homologue to PRF|1909359A.0|445612|1909359A ribosomal protein S19.
{Solanum tuberosum;} , partial (77%)
Length = 628
Score = 198 bits (504), Expect = 6e-52
Identities = 97/102 (95%), Positives = 99/102 (96%)
Frame = +3
Query: 29 LHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYE 88
LHPGRANVSKAELKEKL R+YDVKD NTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYE
Sbjct: 321 LHPGRANVSKAELKEKLGRMYDVKDTNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYE 500
Query: 89 PKYRLVRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKAGDA 130
PKYRL+RNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKA DA
Sbjct: 501 PKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDA 626
>TC224763 similar to PRF|1909359A.0|445612|1909359A ribosomal protein S19.
{Solanum tuberosum;} , partial (98%)
Length = 751
Score = 128 bits (321), Expect(3) = 1e-51
Identities = 64/76 (84%), Positives = 66/76 (86%)
Frame = +2
Query: 1 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVF 60
MADKAVTIRTR FMT RLLS KQFVIDVLHPG AN SKAELKEKL R+YD KD N VF F
Sbjct: 143 MADKAVTIRTRMFMTTRLLSGKQFVIDVLHPGSANDSKAELKEKLRRMYDEKDTNPVFAF 322
Query: 61 KFRTHFGGGKSTGFGL 76
KFRTHFGGGKSTGFG+
Sbjct: 323 KFRTHFGGGKSTGFGV 370
Score = 69.7 bits (169), Expect(3) = 1e-51
Identities = 35/41 (85%), Positives = 36/41 (87%)
Frame = +1
Query: 97 GLDTKVEKSRKQMKERKNRAKKIRGVKKTKAGDAAKAGKKK 137
GL K EKSRKQMKERKNRAKKIRGV+KTKA DAAK GKKK
Sbjct: 421 GLSGKEEKSRKQMKERKNRAKKIRGVQKTKASDAAKTGKKK 543
Score = 42.0 bits (97), Expect(3) = 1e-51
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +3
Query: 77 IYDSVENAKKYEPKYRLVRNGLDTK 101
+YDSVENAKK EPKYRL+R G + K
Sbjct: 375 LYDSVENAKKCEPKYRLIRKGREIK 449
>BQ741899
Length = 422
Score = 189 bits (481), Expect = 3e-49
Identities = 93/105 (88%), Positives = 99/105 (93%)
Frame = +2
Query: 33 RANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYR 92
R +AELKEKLAR+YDVKDPNTVFVFKFRTHFGGG S+GFGLIYD++ENAKKYEPKYR
Sbjct: 80 REREREAELKEKLARMYDVKDPNTVFVFKFRTHFGGGFSSGFGLIYDTMENAKKYEPKYR 259
Query: 93 LVRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKAGDAAKAGKKK 137
L+RNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKA DAAKAGKKK
Sbjct: 260 LIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 394
>AW471914
Length = 247
Score = 135 bits (340), Expect = 6e-33
Identities = 66/82 (80%), Positives = 73/82 (88%)
Frame = +2
Query: 45 LARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLVRNGLDTKVEK 104
L R+YD KD +TVF FKF+THFGGGKSTGFGLIYDSVENA K+EPKYRL+RNGLDTKVEK
Sbjct: 2 LGRMYDEKDTSTVFGFKFQTHFGGGKSTGFGLIYDSVENANKFEPKYRLIRNGLDTKVEK 181
Query: 105 SRKQMKERKNRAKKIRGVKKTK 126
SRKQ+ ER AKK+RGVKKTK
Sbjct: 182 SRKQLMER*IIAKKMRGVKKTK 247
>BE803241 similar to GP|28564876|gb| RPS24 {Saccharomyces castellii}, partial
(58%)
Length = 342
Score = 114 bits (286), Expect = 1e-26
Identities = 58/88 (65%), Positives = 67/88 (75%)
Frame = +3
Query: 5 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRT 64
+VTIRTRK +TNRLL+RKQ +IDVLHP RANVSK EL + +A + KD VFVF RT
Sbjct: 78 SVTIRTRKVLTNRLLNRKQMIIDVLHPNRANVSKKELTDLIA*EFQAKDSKAVFVFGMRT 257
Query: 65 HFGGGKSTGFGLIYDSVENAKKYEPKYR 92
FGG KSTGF LIYDS+E+A EPKYR
Sbjct: 258 AFGGQKSTGFALIYDSLEDALDSEPKYR 341
>BE803313 weakly similar to GP|27883560|gb| ribosomal protein S24 {Ictalurus
punctatus}, partial (43%)
Length = 379
Score = 99.0 bits (245), Expect = 6e-22
Identities = 55/119 (46%), Positives = 74/119 (61%)
Frame = +2
Query: 8 IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFG 67
+RT + +T +LL+R+Q +IDVLHP ANVS EL + + + D N V + RT
Sbjct: 2 MRTLEVLTYKLLTRRQMIIDVLHPHHANVS*KELTD*IDQEIKANDSNADCVLRMRTAVR 181
Query: 68 GGKSTGFGLIYDSVENAKKYEPKYRLVRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 126
G +S+G LIYDS E+A EPKYRLVR GL+ K + S +Q +E KNR K+RG K
Sbjct: 182 GQQSSG*ALIYDSSEDALDSEPKYRLVRPGLNAKKDGSHQQRRELKNRKLKVRGSNMAK 358
>AI442065 weakly similar to SP|Q9SS17|RS24_ 40S ribosomal protein S24.
[Mouse-ear cress] {Arabidopsis thaliana}, partial (33%)
Length = 133
Score = 54.3 bits (129), Expect = 2e-08
Identities = 28/44 (63%), Positives = 32/44 (72%)
Frame = +2
Query: 6 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIY 49
VTIR K MTN L+SRKQ +DVLH RANV A LKEKL ++Y
Sbjct: 2 VTIRPTKVMTNMLISRKQMDVDVLHSWRANVFHAVLKEKLGQMY 133
>AI794922 homologue to SP|Q9SS17|RS24_ 40S ribosomal protein S24.
[Mouse-ear cress] {Arabidopsis thaliana}, partial (30%)
Length = 413
Score = 51.2 bits (121), Expect = 2e-07
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = +1
Query: 1 MADKAVTIRTRKFMTNRLLSRKQFV 25
MADKAVTIRTRKFMTNRLLSRKQFV
Sbjct: 46 MADKAVTIRTRKFMTNRLLSRKQFV 120
Score = 38.1 bits (87), Expect = 0.001
Identities = 16/18 (88%), Positives = 18/18 (99%)
Frame = +3
Query: 25 VIDVLHPGRANVSKAELK 42
++DVLHPGRANVSKAELK
Sbjct: 360 IVDVLHPGRANVSKAELK 413
>CO983030
Length = 505
Score = 34.7 bits (78), Expect = 0.015
Identities = 18/53 (33%), Positives = 29/53 (53%)
Frame = +3
Query: 85 KKYEPKYRLVRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKAGDAAKAGKKK 137
KK + K + + K +K +K+ K++KN+ KK +KKT+ K KKK
Sbjct: 198 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKKKKXXKIKKTQKKKXXKT*KKK 356
>TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%)
Length = 1005
Score = 30.8 bits (68), Expect = 0.21
Identities = 16/46 (34%), Positives = 25/46 (53%)
Frame = +3
Query: 81 VENAKKYEPKYRLVRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 126
+E KK K ++G EK +K+ K++K + KK+ G KTK
Sbjct: 600 IEEIKKEGEKEDKGKDGGKEVKEKKKKEDKDKKEKKKKVTGKDKTK 737
>AW101589 GP|21104742|db OJ1117_G01.13 {Oryza sativa (japonica
cultivar-group)}, partial (24%)
Length = 235
Score = 30.0 bits (66), Expect = 0.36
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 100 TKVEKSRKQMKERKNRAKKIRGVKKTKAGDAAKAGKKK 137
+ VEK +K+ K++K + KK + KK K K KKK
Sbjct: 21 SSVEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 134
>TC207814 similar to UP|Q75XU7 (Q75XU7) RIO kinase, partial (43%)
Length = 1259
Score = 28.5 bits (62), Expect = 1.0
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +2
Query: 79 DSVENAKKYEPKYRLVRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKAGDAAKAGKKK 137
D N+++ P V + D K + + + +K ++ R +KTK A K KKK
Sbjct: 710 DDESNSEEDSPSESEVDDPADKKAARKEARKENKKKVKEEKREARKTKVPKAVKKRKKK 886
Score = 26.2 bits (56), Expect = 5.2
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 82 ENAKKYEPKYRLVRNGLDTKVEKSRKQMKERKNRAKKIR 120
EN KK + + R R TKV K+ K+ K++ +AKK R
Sbjct: 803 ENKKKVKEEKREARK---TKVPKAVKKRKKKLAKAKKTR 910
>TC230829 weakly similar to UP|Q9LDH1 (Q9LDH1) SigA binding protein, partial
(28%)
Length = 862
Score = 28.1 bits (61), Expect = 1.4
Identities = 21/57 (36%), Positives = 31/57 (53%), Gaps = 2/57 (3%)
Frame = +1
Query: 46 ARIYDVKDPNTV-FVFKFRTHF-GGGKSTGFGLIYDSVENAKKYEPKYRLVRNGLDT 100
AR + + PN+ F+ R+H GGG+ + L S +KYEP+ RL+R G T
Sbjct: 331 ARSHPLPRPNSP*FLLFCRSHQRGGGQCSQCELCCSSRSRRRKYEPR-RLLRGGTTT 498
>CK605837
Length = 498
Score = 28.1 bits (61), Expect = 1.4
Identities = 14/48 (29%), Positives = 24/48 (49%)
Frame = +1
Query: 90 KYRLVRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKAGDAAKAGKKK 137
+ ++ G+D +K+ K++K + KK + KK K K KKK
Sbjct: 13 RIKITAKGIDMASSFKQKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 156
>TC206344
Length = 738
Score = 28.1 bits (61), Expect = 1.4
Identities = 19/69 (27%), Positives = 29/69 (41%), Gaps = 10/69 (14%)
Frame = -2
Query: 42 KEKLARIYDVKDPNTVFVFKFRTHFG---------GGKSTGF-GLIYDSVENAKKYEPKY 91
K +LA+IY +D N + + H G G T F G +Y S +K P++
Sbjct: 218 KPELAKIYYTRDNNEIICTAWHLHLGAIPRG*PQDGASETIFIGYLYHSDRASKNPNPEF 39
Query: 92 RLVRNGLDT 100
+ G T
Sbjct: 38 SRINGGGST 12
>TC223840 similar to GB|AAR92297.1|40823665|BT011261 At2g45860 {Arabidopsis
thaliana;} , complete
Length = 460
Score = 27.7 bits (60), Expect = 1.8
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Frame = +2
Query: 71 STGFGLIYDSVEN---AKKYEPKYRLVRNGLDTKVEKSRKQMKERKNRAKKIR-----GV 122
S G LI D +KK R + D + EK K KE+K AKK +
Sbjct: 2 SLGLCLIVD*ANKGTMSKKNNLAKRKKQYEFDLQREKQEKIKKEQKLHAKKNKMKVDGSG 181
Query: 123 KKTKAGDAAKAGKKK 137
KK K G + GK+K
Sbjct: 182 KKKKGGSGFQVGKRK 226
>TC207029 weakly similar to UP|Q7R8E7 (Q7R8E7) Ran-binding protein, partial
(19%)
Length = 712
Score = 27.7 bits (60), Expect = 1.8
Identities = 20/59 (33%), Positives = 32/59 (53%)
Frame = +1
Query: 79 DSVENAKKYEPKYRLVRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKAGDAAKAGKKK 137
D E K+ E + + +G + K EK +K+ K++K + KK+ G KTK A K +K
Sbjct: 193 DIEETTKEGEKEDKEKDDGKEVK-EKKKKEDKDKKEK-KKVTGKDKTKDLSALKQKLEK 363
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.134 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,811,626
Number of Sequences: 63676
Number of extensions: 36798
Number of successful extensions: 276
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of query: 137
length of database: 12,639,632
effective HSP length: 87
effective length of query: 50
effective length of database: 7,099,820
effective search space: 354991000
effective search space used: 354991000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Medicago: description of AC135565.4