BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135467.11 - phase: 0
(807 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC215774 similar to UP|Q94ES0 (Q94ES0) AAA-metalloprotease FtsH,... 1105 0.0
TC205253 homologue to UP|O99018 (O99018) Chloroplast protease pr... 388 e-108
TC215773 similar to UP|Q94ES0 (Q94ES0) AAA-metalloprotease FtsH,... 284 1e-76
TC206154 homologue to UP|FTSH_MEDSA (Q9BAE0) Cell division prote... 272 4e-73
TC231751 homologue to GB|BAB08420.1|9757998|AB025622 cell divisi... 239 3e-63
TC205252 homologue to UP|Q9ZP50 (Q9ZP50) FtsH-like protein Pftf ... 228 1e-59
TC215551 homologue to UP|PRS7_SPIOL (Q41365) 26S protease regula... 195 6e-50
TC215552 UP|PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit ... 195 6e-50
TC225681 homologue to UP|Q9SZD4 (Q9SZD4) 26S proteasome subunit ... 193 3e-49
TC225683 homologue to UP|Q9SZD4 (Q9SZD4) 26S proteasome subunit ... 193 3e-49
TC225592 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 ... 185 6e-47
TC214213 homologue to UP|PRSA_BRACM (O23894) 26S protease regula... 184 1e-46
TC205434 homologue to UP|PRS6_ARATH (Q9SEI4) 26S protease regula... 179 6e-45
TC206116 UP|CC48_SOYBN (P54774) Cell division cycle protein 48 h... 177 1e-44
TC228291 homologue to UP|Q9FXT8 (Q9FXT8) 26S proteasome regulato... 164 1e-40
TC227363 similar to UP|Q9SD67 (Q9SD67) FtsH metalloprotease-like... 156 4e-38
BE661034 similar to SP|Q9ZPR1|C48B Cell division control protein... 152 4e-37
AW201375 homologue to GP|17065470|gb cell division protein FtsH-... 152 6e-37
TC220704 weakly similar to UP|Q94ES0 (Q94ES0) AAA-metalloproteas... 147 2e-35
TC227714 similar to UP|C48C_ARATH (Q9SS94) Cell division control... 144 1e-34
>TC215774 similar to UP|Q94ES0 (Q94ES0) AAA-metalloprotease FtsH, partial
(79%)
Length = 2084
Score = 1105 bits (2859), Expect = 0.0
Identities = 560/652 (85%), Positives = 601/652 (91%), Gaps = 4/652 (0%)
Frame = +3
Query: 159 DQQQISFQEFKNKLLEPGLVDHIVVSNKSVAKIYVRNSPLNQADSEV-QGTLPAKGSGGQ 217
+Q+QISFQEFKNKLLEPGLVDHIVVSNKSVAK+YVRN+PLNQ D+EV QGT PA GSGGQ
Sbjct: 3 EQKQISFQEFKNKLLEPGLVDHIVVSNKSVAKVYVRNTPLNQTDNEVAQGTQPAIGSGGQ 182
Query: 218 YKYIINIGSVESFEEKLEEAQEALGVDSHNFVPVTYSSEMVWYQELMRFAPTLLLLGTLW 277
YKY NIGSVESFEEKLEEAQEALG+ SH+FVPVTYSSE+VWYQELMRFAPTLLLLG+L
Sbjct: 183 YKYYFNIGSVESFEEKLEEAQEALGIYSHDFVPVTYSSEVVWYQELMRFAPTLLLLGSLL 362
Query: 278 FMGRKMQGGFGVGGGSTGKGSRGIFNIGKAHVTKVDKNTKNKVYFKDVAGCEEAKQEIME 337
+MGR+MQGG GVGG GKG+RGIFNIGKA VTKVDKN KNK+YFKDVAGC+EAKQEIME
Sbjct: 363 YMGRRMQGGIGVGGSGGGKGARGIFNIGKAPVTKVDKNAKNKIYFKDVAGCDEAKQEIME 542
Query: 338 FVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFV 397
FVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFV
Sbjct: 543 FVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFV 722
Query: 398 GVGPSRVRNLFQEARQCAPSIVFIDEIDAIGRKRGRGGFSGSNDERESTLNQLLVEMDGF 457
GVGPSRVRNLFQEARQC+PSIVFIDEIDAIGR R RG FSG+NDERESTLNQLLVEMDGF
Sbjct: 723 GVGPSRVRNLFQEARQCSPSIVFIDEIDAIGRAR-RGSFSGANDERESTLNQLLVEMDGF 899
Query: 458 GTTAGVVVLAGTNRADILDNALLRPGRFDRTISIDVPDIKGRDQIFQIYLKKIKLDHEPS 517
GTT+GVVVLAGTNR +ILD ALLRPGRFDR I+ID PDIKGRDQIFQIYLKKIKLDHEPS
Sbjct: 900 GTTSGVVVLAGTNRPEILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLDHEPS 1079
Query: 518 YYSQRLAALTPGFAGADIANVCNEAALIAARTDESQVTMDHFEAAIDRIIGGLEKKNRVI 577
YYS RLAALTPGFAGADIANVCNEAALIAAR + +QVTM+HFEAAIDRIIGGLEK+N+VI
Sbjct: 1080YYSPRLAALTPGFAGADIANVCNEAALIAARGEGTQVTMEHFEAAIDRIIGGLEKRNKVI 1259
Query: 578 SKRERRTVAYHEAGHAVAGWFLEHCEPLLKVTIVPRGTAALGFAQYVPSENLLRTKEQLL 637
SK ERRTVAYHEAGHAV+GWFLEH EPLLKVTIVPRGTAALGFAQYVP+ENLL TKEQL
Sbjct: 1260SKLERRTVAYHEAGHAVSGWFLEHVEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLF 1439
Query: 638 DMTCMTLGGRAAEQVLIGAISTGAQNDLEKVTKMTYAQVAIYGFSEKVGLLSFPQNEDQF 697
DMTCMTLGGRAAEQVLIG ISTGAQNDLEKVTKMTYAQVA+YGFS+KVGLLSFP E +
Sbjct: 1440DMTCMTLGGRAAEQVLIGRISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPPTEGSY 1619
Query: 698 --GKPYSGDTGNIIDQEVRDWVNHAYERTVQLIEEHKEKLAQIAELLLEKEVLHQEDLVR 755
KPYS T IID EVRDWVN AYE TVQLI+EHKE++AQIAELLLEKEVLHQ+DL+R
Sbjct: 1620EISKPYSSKTAAIIDNEVRDWVNKAYEHTVQLIKEHKEQVAQIAELLLEKEVLHQDDLLR 1799
Query: 756 ILGERPFKSAEPTNYDRFKLGF-QDEEKAAETTVDEAEEGSGSSPLEPEVVP 806
+LGERPFK EPTNYDRFK GF ++EEK AE+T+D E+G GSSPLEP+VVP
Sbjct: 1800VLGERPFKVTEPTNYDRFKQGFIEEEEKVAESTIDTPEKGGGSSPLEPQVVP 1955
>TC205253 homologue to UP|O99018 (O99018) Chloroplast protease precursor,
partial (69%)
Length = 1678
Score = 388 bits (997), Expect = e-108
Identities = 213/451 (47%), Positives = 298/451 (65%), Gaps = 11/451 (2%)
Frame = +2
Query: 320 VYFKDVAGCEEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGE 379
V F DVAG +EAKQ+ ME V FLK P+++ +GA+IPKG LLVGPPGTGKTLLAKA AGE
Sbjct: 50 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGE 229
Query: 380 SGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIVFIDEIDAIGRKRGRGGFSGS 439
+GVPF SISGS+F+EMFVGVG SRVR+LF++A++ AP IVF+DEIDA+GR+RG G G
Sbjct: 230 AGVPFFSISGSEFVEMFVGVGASRVRDLFRKAKENAPCIVFVDEIDAVGRQRGT-GIGGG 406
Query: 440 NDERESTLNQLLVEMDGFGTTAGVVVLAGTNRADILDNALLRPGRFDRTISIDVPDIKGR 499
NDERE TLNQLL EMDGF G++V+A TNR DILD+ALLRPGRFDR +++DVPDI+GR
Sbjct: 407 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRVDILDSALLRPGRFDRQVTVDVPDIRGR 586
Query: 500 DQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARTDESQVTMDHF 559
+I +++ K + + S + +A TPGF+GAD+AN+ NEAA++A R ++ ++
Sbjct: 587 TEILKVHGSNKKFEADVSL--EVIAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEI 760
Query: 560 EAAIDRIIGGLEKKNRVISKRERRTVAYHEAGHAVAGWFLEHCEPLLKVTIVPRGTAALG 619
+ +IDRI+ G+E + + + VAYHE GHA+ G +P+ KVT+VPRG A G
Sbjct: 761 DDSIDRIVAGME-GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-G 934
Query: 620 FAQYVPSEN-LLRTKEQLLDMTCMTLGGRAAEQVLIG--AISTGAQNDLEKVTKMTYAQV 676
++P+++ L +K+QL LGGRAAE+V+ G ++TGA DL+++T + V
Sbjct: 935 LTWFIPADDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITSLAKQMV 1114
Query: 677 AIYGFSEKVGLLSFPQNEDQFG--------KPYSGDTGNIIDQEVRDWVNHAYERTVQLI 728
+G S+ +G S + Q S ID V+ + AYE + I
Sbjct: 1115TTFGMSD-IGPWSLMDSSAQSDVIMRMMARNSMSEKLAEDIDAAVKRLSDEAYEIALSQI 1291
Query: 729 EEHKEKLAQIAELLLEKEVLHQEDLVRILGE 759
++E + +I E+LLEKE + ++ +L E
Sbjct: 1292RSNREAIDKIVEVLLEKETMSGDEFRALLSE 1384
>TC215773 similar to UP|Q94ES0 (Q94ES0) AAA-metalloprotease FtsH, partial
(24%)
Length = 724
Score = 284 bits (726), Expect = 1e-76
Identities = 144/196 (73%), Positives = 162/196 (82%), Gaps = 3/196 (1%)
Frame = +1
Query: 615 TAALGFAQYVPSENLLRTKEQLLDMTCMTLGGRAAEQVLIGAISTGAQNDLEKVTKMTYA 674
TA FAQYVP+E TK L DMTCMTLGGRAAEQVLIG ISTGAQNDLEKVTK+TYA
Sbjct: 1 TAXXXFAQYVPNEXXXMTKXXLFDMTCMTLGGRAAEQVLIGRISTGAQNDLEKVTKLTYA 180
Query: 675 QVAIYGFSEKVGLLSFPQNED--QFGKPYSGDTGNIIDQEVRDWVNHAYERTVQLIEEHK 732
QVA+YGFS+KVGLLSFP E +F KPYS T IID EVRDWV+ AY+ T+QLIEEHK
Sbjct: 181 QVAVYGFSDKVGLLSFPPTEGSYEFSKPYSSKTAAIIDSEVRDWVDKAYKHTIQLIEEHK 360
Query: 733 EKLAQIAELLLEKEVLHQEDLVRILGERPFKSAEPTNYDRFKLGF-QDEEKAAETTVDEA 791
E++ QIAELLLEKEVLHQ+DL+R+LGERPFK+ E TNYDRFK GF ++EEK E+TVD
Sbjct: 361 EQVTQIAELLLEKEVLHQDDLLRVLGERPFKATELTNYDRFKQGFIEEEEKVVESTVDTP 540
Query: 792 EEGSGSSPLEPEVVPT 807
EEG GSSPLEP+VVPT
Sbjct: 541 EEGGGSSPLEPQVVPT 588
>TC206154 homologue to UP|FTSH_MEDSA (Q9BAE0) Cell division protein ftsH
homolog, chloroplast precursor , partial (88%)
Length = 2059
Score = 272 bits (696), Expect = 4e-73
Identities = 145/343 (42%), Positives = 217/343 (62%), Gaps = 14/343 (4%)
Frame = +1
Query: 428 GRKRGRGGFSGSNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRADILDNALLRPGRFDR 487
G + GRG F G NDERE T+NQLL EMDGF +GV+VLA TNR D+LD+ALLRPGRFDR
Sbjct: 838 GSREGRG-FGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDR 1014
Query: 488 TISIDVPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAA 547
+++D PD+ GR +I Q++ + L + + +++A TPGF GAD+ N+ NEAA++AA
Sbjct: 1015 QVTVDRPDVAGRVKILQVHSRGKALAKDVDF--EKIARRTPGFTGADLQNLMNEAAILAA 1188
Query: 548 RTDESQVTMDHFEAAIDRIIGGLEKKNRVISKRERRTVAYHEAGHAVAGWFLEHCEPLLK 607
R D +++ D A++RII G EKKN V+S +++ VAYHEAGHA+ G + +P+ K
Sbjct: 1189 RRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAK 1368
Query: 608 VTIVPRGTAALGFAQYVPSENLLR----TKEQLLDMTCMTLGGRAAEQVLIGA--ISTGA 661
++I+PRG A G + PSE L ++ L + + LGGR AE+V+ G ++TGA
Sbjct: 1369 ISIIPRGQAG-GLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQENVTTGA 1545
Query: 662 QNDLEKVTKMTYAQVAIYGFSEKVGLLS--------FPQNEDQFGKPYSGDTGNIIDQEV 713
ND +V+++ V +GFS+K+G ++ F + K YS T +++D EV
Sbjct: 1546 SNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEV 1725
Query: 714 RDWVNHAYERTVQLIEEHKEKLAQIAELLLEKEVLHQEDLVRI 756
R+ V AY R +I H + L ++A+LL+EKE + E+ + +
Sbjct: 1726 RELVERAYSRATHIISTHIDILHKLAQLLIEKETVDGEEFMSL 1854
Score = 165 bits (418), Expect = 6e-41
Identities = 93/168 (55%), Positives = 114/168 (67%)
Frame = +2
Query: 270 LLLLGTLWFMGRKMQGGFGVGGGSTGKGSRGIFNIGKAHVTKVDKNTKNKVYFKDVAGCE 329
LL L+F+ R+ QGG G GG G G + +K + + V F DVAG +
Sbjct: 380 LLAFAGLFFLFRRAQGGPGGPGGLGGPMDFG------RNKSKFQEVPETGVSFADVAGAD 541
Query: 330 EAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISG 389
+AK E+ E V FLKNP KY LGAKIPKG LLVGPPGTGKTLLA+A AGE+GVPF S +
Sbjct: 542 QAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAA 721
Query: 390 SDFMEMFVGVGPSRVRNLFQEARQCAPSIVFIDEIDAIGRKRGRGGFS 437
S+F+E+FVGVG SRVR+LF++A+ AP IVFIDEIDA+ RGG S
Sbjct: 722 SEFVELFVGVGASRVRDLFEKAKGKAPCIVFIDEIDAVWEAE-RGGAS 862
>TC231751 homologue to GB|BAB08420.1|9757998|AB025622 cell division protein
FtsH protease-like {Arabidopsis thaliana;} , partial
(30%)
Length = 733
Score = 239 bits (611), Expect = 3e-63
Identities = 129/229 (56%), Positives = 161/229 (69%), Gaps = 2/229 (0%)
Frame = +1
Query: 317 KNKVYFKDVAGCEEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKAT 376
KN FKDV GC++AKQE+ E V +LKNP K+ LG K+PKG LL GPPGTGKTLLAKA
Sbjct: 73 KNVKTFKDVKGCDDAKQELEEVVEYLKNPAKFTRLGGKLPKGILLTGPPGTGKTLLAKAI 252
Query: 377 AGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIVFIDEIDAIG--RKRGRG 434
AGE+GVPF +GS+F EM+VGVG RVR+LFQ A++ AP I+FIDEIDA+G RK+ G
Sbjct: 253 AGEAGVPFFYRAGSEFEEMYVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG 432
Query: 435 GFSGSNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRADILDNALLRPGRFDRTISIDVP 494
+ TL+QLLVEMDGF G++V+A TN DILD AL RPGRFDR I + P
Sbjct: 433 -------HTKKTLHQLLVEMDGFEQNEGIIVIAATNLPDILDPALTRPGRFDRHIVVPNP 591
Query: 495 DIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAA 543
D++GR +I ++YL+ L + S +A TPGF GAD+AN+ N AA
Sbjct: 592 DLRGRQEILELYLQDKPLADDIDIKS--IARGTPGFNGADLANLVNIAA 732
>TC205252 homologue to UP|Q9ZP50 (Q9ZP50) FtsH-like protein Pftf precursor,
partial (61%)
Length = 1482
Score = 228 bits (580), Expect = 1e-59
Identities = 133/332 (40%), Positives = 199/332 (59%), Gaps = 12/332 (3%)
Frame = +3
Query: 440 NDERESTLNQLLVEMDGFGTTAGVVVLAGTNRADILDNALLRPGRFDRTISIDVPDIKGR 499
NDERE TLNQLL EMDGF G++V+A TNRADILD+ALLRPGRFDR +++DVPDI+GR
Sbjct: 222 NDEREQTLNQLLTEMDGFEGNTGIIVVAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 401
Query: 500 DQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARTDESQVTMDHF 559
+I +++ K D + S + +A TPGF+GAD+AN+ NEAA++A R ++ ++
Sbjct: 402 TEILKVHASNKKFDADVSL--EVIAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEI 575
Query: 560 EAAIDRIIGGLEKKNRVISKRERRTVAYHEAGHAVAGWFLEHCEPLLKVTIVPRGTAALG 619
+ +IDRI+ G+E + + + VAYHE GHA+ G + + KVT+VPRG A G
Sbjct: 576 DDSIDRIVAGME-GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDAVQKVTLVPRGQAR-G 749
Query: 620 FAQYVPSEN-LLRTKEQLLDMTCMTLGGRAAEQVLIG--AISTGAQNDLEKVTKMTYAQV 676
++P+++ L +K+QL LGGRAAE+++ G ++TGA DL+++T + V
Sbjct: 750 LTWFIPNDDPTLISKQQLFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQITGLAKQMV 929
Query: 677 AIYGFSEKVGLLSFPQNEDQFG---------KPYSGDTGNIIDQEVRDWVNHAYERTVQL 727
+G S+ +G S + Q G S ID ++ + AYE +
Sbjct: 930 TTFGMSD-IGPWSLMEASAQSGDVIMRMMARNSMSERLAEDIDAAIKRISDEAYEIALDH 1106
Query: 728 IEEHKEKLAQIAELLLEKEVLHQEDLVRILGE 759
I ++E + +I E+LLEKE L ++ IL E
Sbjct: 1107IRNNREAIDKIVEVLLEKETLTGDEFRAILSE 1202
Score = 109 bits (273), Expect = 4e-24
Identities = 56/83 (67%), Positives = 68/83 (81%), Gaps = 2/83 (2%)
Frame = +1
Query: 366 GTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIVFIDEID 425
GTGKTLLAKA AGE+GVPF SISGS+F+EMFVGVG SRVR+LF++A++ AP IVF+DEID
Sbjct: 1 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEID 180
Query: 426 AIGRKR--GRGGFSGSNDEREST 446
A+GR+R G GG + R ST
Sbjct: 181 AVGRQRGTGNGGKGMMKESRPST 249
>TC215551 homologue to UP|PRS7_SPIOL (Q41365) 26S protease regulatory subunit
7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase
subunit RPT1) (Regulatory particle triple-A ATPase
subunit 1), complete
Length = 1561
Score = 195 bits (496), Expect = 6e-50
Identities = 108/265 (40%), Positives = 155/265 (57%), Gaps = 1/265 (0%)
Frame = +3
Query: 309 VTKVDKNTKNKVYFKDVAGCEEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGT 367
VT + K V + DV GC+E +++ E V + +P+K+ +LG PKG L GPPGT
Sbjct: 516 VTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGT 695
Query: 368 GKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIVFIDEIDAI 427
GKTLLA+A A + F+ + GS+ ++ +VG G VR LFQ AR IVF DE+DAI
Sbjct: 696 GKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAI 875
Query: 428 GRKRGRGGFSGSNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRADILDNALLRPGRFDR 487
G R G G N E + T+ +++ ++DGF + VL TNR D LD ALLRPGR DR
Sbjct: 876 GGARFDDGVGGDN-EVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDR 1052
Query: 488 TISIDVPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAA 547
+ +PD++ R QIF+I+ + + + + + + LA L P GADI +VC EA + A
Sbjct: 1053KVEFGLPDLESRTQIFKIHTRTMNCERDIRF--ELLARLCPNSTGADIRSVCTEAGMYAI 1226
Query: 548 RTDESQVTMDHFEAAIDRIIGGLEK 572
R VT F A++++I G +K
Sbjct: 1227RARRKTVTEKDFLDAVNKVIKGYQK 1301
>TC215552 UP|PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit 7 (26S
proteasome subunit 7) (26S proteasome AAA-ATPase subunit
RPT1a) (Regulatory particle triple-A ATPase subunit 1a),
partial (73%)
Length = 1082
Score = 195 bits (496), Expect = 6e-50
Identities = 108/265 (40%), Positives = 155/265 (57%), Gaps = 1/265 (0%)
Frame = +1
Query: 309 VTKVDKNTKNKVYFKDVAGCEEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGT 367
VT + K V + DV GC+E +++ E V + +P+K+ +LG PKG L GPPGT
Sbjct: 109 VTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGT 288
Query: 368 GKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIVFIDEIDAI 427
GKTLLA+A A + F+ + GS+ ++ +VG G VR LFQ AR IVF DE+DAI
Sbjct: 289 GKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAI 468
Query: 428 GRKRGRGGFSGSNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRADILDNALLRPGRFDR 487
G R G G N E + T+ +++ ++DGF + VL TNR D LD ALLRPGR DR
Sbjct: 469 GGARFDDGVGGDN-EVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDR 645
Query: 488 TISIDVPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAA 547
+ +PD++ R QIF+I+ + + + + + + LA L P GADI +VC EA + A
Sbjct: 646 KVEFGLPDLESRTQIFKIHTRTMNCERDIRF--ELLARLCPNSTGADIRSVCTEAGMYAI 819
Query: 548 RTDESQVTMDHFEAAIDRIIGGLEK 572
R VT F A++++I G +K
Sbjct: 820 RARRKTVTEKDFLDAVNKVIKGYQK 894
>TC225681 homologue to UP|Q9SZD4 (Q9SZD4) 26S proteasome subunit 4-like
protein (26S proteasome subunit AtRPT2a), partial (93%)
Length = 1433
Score = 193 bits (490), Expect = 3e-49
Identities = 112/260 (43%), Positives = 155/260 (59%), Gaps = 1/260 (0%)
Frame = +1
Query: 309 VTKVDKNTKNKVYFKDVAGCEEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGT 367
V KV+K + D+ G + QEI E V L +P+ YE++G K PKG +L G PGT
Sbjct: 433 VMKVEKAPLES--YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGT 606
Query: 368 GKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIVFIDEIDAI 427
GKTLLAKA A + FL + GS+ ++ ++G GP VR LF+ A +PSIVFIDEIDA+
Sbjct: 607 GKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAV 786
Query: 428 GRKRGRGGFSGSNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRADILDNALLRPGRFDR 487
G KR SG E + T+ +LL ++DGF + V V+ TNR + LD ALLRPGR DR
Sbjct: 787 GTKR-YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDR 963
Query: 488 TISIDVPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAA 547
I +PDIK R +IFQI+ ++ L + + + F+GADI +C EA L+A
Sbjct: 964 KIEFPLPDIKTRRRIFQIHTSRMTLADDVNL--EEFVMTKDEFSGADIKAICTEAGLLAL 1137
Query: 548 RTDESQVTMDHFEAAIDRII 567
R +VT F+ A D+++
Sbjct: 1138RERRMKVTHADFKKAKDKVM 1197
>TC225683 homologue to UP|Q9SZD4 (Q9SZD4) 26S proteasome subunit 4-like
protein (26S proteasome subunit AtRPT2a), partial (97%)
Length = 1513
Score = 193 bits (490), Expect = 3e-49
Identities = 112/260 (43%), Positives = 155/260 (59%), Gaps = 1/260 (0%)
Frame = +2
Query: 309 VTKVDKNTKNKVYFKDVAGCEEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGT 367
V KV+K + D+ G + QEI E V L +P+ YE++G K PKG +L G PGT
Sbjct: 536 VMKVEKAPLES--YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGT 709
Query: 368 GKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIVFIDEIDAI 427
GKTLLAKA A + FL + GS+ ++ ++G GP VR LF+ A +PSIVFIDEIDA+
Sbjct: 710 GKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAV 889
Query: 428 GRKRGRGGFSGSNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRADILDNALLRPGRFDR 487
G KR SG E + T+ +LL ++DGF + V V+ TNR + LD ALLRPGR DR
Sbjct: 890 GTKR-YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDR 1066
Query: 488 TISIDVPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAA 547
I +PDIK R +IFQI+ ++ L + + + F+GADI +C EA L+A
Sbjct: 1067KIEFPLPDIKTRRRIFQIHTSRMTLADDVNL--EEFVMTKDEFSGADIKAICTEAGLLAL 1240
Query: 548 RTDESQVTMDHFEAAIDRII 567
R +VT F+ A D+++
Sbjct: 1241RERRMKVTHADFKKAKDKVM 1300
>TC225592 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {Arabidopsis
thaliana;} , partial (94%)
Length = 1612
Score = 185 bits (470), Expect = 6e-47
Identities = 109/288 (37%), Positives = 165/288 (56%), Gaps = 2/288 (0%)
Frame = +3
Query: 325 VAGCEEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVP 383
+ G ++ +EI E + +K+P+ +E LG PKG LL GPPGTGKTLLA+A A +
Sbjct: 585 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT 764
Query: 384 FLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIVFIDEIDAIGRKRGRGGFSGSNDER 443
F+ +SGS+ ++ ++G G VR LF AR+ APSI+F+DEID+IG R G + E
Sbjct: 765 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEV 944
Query: 444 ESTLNQLLVEMDGFGTTAGVVVLAGTNRADILDNALLRPGRFDRTISIDVPDIKGRDQIF 503
+ T+ +LL ++DGF + + VL TNR DILD ALLRPGR DR I P+ + R I
Sbjct: 945 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDIL 1124
Query: 504 QIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARTDESQVTMDHFEAAI 563
+I+ +++ L +++A G +GA++ VC EA + A R VT + FE A+
Sbjct: 1125KIHSRRMNLMR--GIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAV 1298
Query: 564 DRIIGGLEKKNRVISKRERRTVAYHEAG-HAVAGWFLEHCEPLLKVTI 610
+++ +KN + K + ++H G H A EH L + T+
Sbjct: 1299AKVMKKETEKNMSLRKL-WK*FSFHVCGAHCPAKMGREHTLGLFQFTV 1439
>TC214213 homologue to UP|PRSA_BRACM (O23894) 26S protease regulatory subunit
6A homolog (TAT-binding protein homolog 1) (TBP-1),
partial (64%)
Length = 1086
Score = 184 bits (467), Expect = 1e-46
Identities = 102/261 (39%), Positives = 158/261 (60%), Gaps = 1/261 (0%)
Frame = +1
Query: 307 AHVTKVDKNTKNKVYFKDVAGCEEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPP 365
+ V ++ + K + D+ G E+ QE++E + + + +++++LG + PKG LL GPP
Sbjct: 1 SRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPP 180
Query: 366 GTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIVFIDEID 425
GTGKTL+A+A A ++ FL ++G ++MF+G G VR+ FQ A++ +P I+FIDEID
Sbjct: 181 GTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEID 360
Query: 426 AIGRKRGRGGFSGSNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRADILDNALLRPGRF 485
AIG KR SG E + T+ +LL ++DGF + + V+A TNRADILD AL+R GR
Sbjct: 361 AIGTKRFDSEVSGDR-EVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRL 537
Query: 486 DRTISIDVPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALI 545
DR I P + R +I QI+ +K+ + P + LA T F GA + VC EA ++
Sbjct: 538 DRKIEFPHPSEEARARILQIHSRKMNV--HPDVNFEELARSTDDFNGAQLKAVCVEAGML 711
Query: 546 AARTDESQVTMDHFEAAIDRI 566
A R D ++V + F I ++
Sbjct: 712 ALRRDATEVNHEDFNEGIIQV 774
>TC205434 homologue to UP|PRS6_ARATH (Q9SEI4) 26S protease regulatory subunit
6B homolog (26S proteasome AAA-ATPase subunit RPT3)
(Regulatory particle triple-A ATPase subunit 3), partial
(96%)
Length = 1573
Score = 179 bits (453), Expect = 6e-45
Identities = 99/253 (39%), Positives = 151/253 (59%), Gaps = 1/253 (0%)
Frame = +1
Query: 309 VTKVDKNTKNKVYFKDVAGCEEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGT 367
++ + ++ K V + D+ GC+ KQEI E V L + + Y+++G P+G LL GPPGT
Sbjct: 535 ISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGT 714
Query: 368 GKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIVFIDEIDAI 427
GKT+LAKA A + F+ + GS+F++ ++G GP VR++F+ A++ AP+I+FIDE+DAI
Sbjct: 715 GKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAI 894
Query: 428 GRKRGRGGFSGSNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRADILDNALLRPGRFDR 487
R +G++ E + L +LL +MDGF T V V+ TNRAD LD ALLRPGR DR
Sbjct: 895 ATAR-FDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDR 1071
Query: 488 TISIDVPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAA 547
I +PD + + +FQ+ K+ L E + + + A+IA +C EA + A
Sbjct: 1072KIEFPLPDRRQKRLVFQVCTAKMNLSDEVDL--EDYVSRPDKISAAEIAAICQEAGMHAV 1245
Query: 548 RTDESQVTMDHFE 560
R + + FE
Sbjct: 1246RKNRYVILPKDFE 1284
>TC206116 UP|CC48_SOYBN (P54774) Cell division cycle protein 48 homolog
(Valosin containing protein homolog) (VCP), complete
Length = 2583
Score = 177 bits (450), Expect = 1e-44
Identities = 99/231 (42%), Positives = 137/231 (58%), Gaps = 2/231 (0%)
Frame = +1
Query: 320 VYFKDVAGCEEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAG 378
V ++D+ G E K+E+ E V + +++P+K+E+ G KG L GPPG GKTLLAKA A
Sbjct: 1453 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 1632
Query: 379 ESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIVFIDEIDAIGRKRGRG-GFS 437
E F+S+ G + + M+ G + VR +F +ARQ AP ++F DE+D+I +RG G +
Sbjct: 1633 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDA 1812
Query: 438 GSNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRADILDNALLRPGRFDRTISIDVPDIK 497
G +R LNQLL EMDG V ++ TNR DI+D ALLRPGR D+ I I +PD
Sbjct: 1813 GGAADR--VLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDED 1986
Query: 498 GRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAAR 548
R QIF+ L+K + + LA T GF+GADI +C A A R
Sbjct: 1987 SRHQIFKACLRKSPIAKNVDL--RALARHTQGFSGADITEICQRACKYAIR 2133
Score = 175 bits (443), Expect = 8e-44
Identities = 106/269 (39%), Positives = 153/269 (56%), Gaps = 18/269 (6%)
Frame = +1
Query: 313 DKNTKNKVYFKDVAGCEEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTL 371
D+ ++V + DV G + +I E V L++P+ ++ +G K PKG LL GPPG+GKTL
Sbjct: 613 DEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTL 792
Query: 372 LAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIVFIDEIDAIGRKR 431
+A+A A E+G F I+G + M G S +R F+EA + APSI+FIDEID+I KR
Sbjct: 793 IARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 972
Query: 432 GRGGFSGSNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRADILDNALLRPGRFDRTISI 491
+ + ++QLL MDG + A V+V+ TNR + +D AL R GRFDR I I
Sbjct: 973 EK----THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 1140
Query: 492 DVPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAAR--- 548
VPD GR ++ +I+ K +KL + +R+A T G+ GAD+A +C EAAL R
Sbjct: 1141GVPDEVGRLEVLRIHTKNMKLSDDVDL--ERIAKDTHGYVGADLAALCTEAALQCIREKM 1314
Query: 549 -----TDES---------QVTMDHFEAAI 563
DE+ VT +HF+ A+
Sbjct: 1315DVIDLEDETIDAEVLNSMAVTNEHFQTAL 1401
>TC228291 homologue to UP|Q9FXT8 (Q9FXT8) 26S proteasome regulatory particle
triple-A ATPase subunit4, partial (62%)
Length = 1079
Score = 164 bits (416), Expect = 1e-40
Identities = 95/235 (40%), Positives = 136/235 (57%), Gaps = 1/235 (0%)
Frame = +3
Query: 333 QEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSD 391
+E+ E + L NP+ + +G K PKG LL GPPGTGKTLLA+A A FL + S
Sbjct: 6 RELRESIELPLMNPELFIRVGIKPPKGVLLYGPPGTGKTLLARAIASNIEANFLKVVSSA 185
Query: 392 FMEMFVGVGPSRVRNLFQEARQCAPSIVFIDEIDAIGRKRGRGGFSGSNDERESTLNQLL 451
++ ++G +R +F AR P I+F+DEIDAIG +R G S ++ E + TL +LL
Sbjct: 186 IIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS-ADREIQRTLMELL 362
Query: 452 VEMDGFGTTAGVVVLAGTNRADILDNALLRPGRFDRTISIDVPDIKGRDQIFQIYLKKIK 511
++DGF V ++ TNR D+LD ALLRPGR DR I I +P+ + R +I +I+ I
Sbjct: 363 NQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIA 542
Query: 512 LDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARTDESQVTMDHFEAAIDRI 566
E Y + + L GF GAD+ NVC EA + A R + V + F A+ ++
Sbjct: 543 KHGEIDY--EAVVKLAEGFNGADLRNVCTEAGMAAIRAERDYVIHEDFMKAVRKL 701
>TC227363 similar to UP|Q9SD67 (Q9SD67) FtsH metalloprotease-like protein,
partial (28%)
Length = 685
Score = 156 bits (394), Expect = 4e-38
Identities = 93/228 (40%), Positives = 132/228 (57%), Gaps = 8/228 (3%)
Frame = +2
Query: 461 AGVVVLAGTNRADILDNALLRPGRFDRTISIDVPDIKGRDQIFQIYLKKIKLDHEPSYYS 520
+ V+VL TNRAD+LD AL RPGRFDR + ++ PD GR+ I ++++ K +L
Sbjct: 2 SAVIVLGATNRADVLDPALRRPGRFDRVVMVETPDRIGREAILKVHVSKKELPLAKDVNL 181
Query: 521 QRLAALTPGFAGADIANVCNEAALIAARTDESQVTMDHFEAAIDRIIGGLEKKNRVISKR 580
+A +T GF GAD+AN+ NEAAL+A R ++ V + A++R I +EKK +
Sbjct: 182 GNIACMTTGFTGADLANLINEAALLAGRQNKIVVEKNDSIQAVERSIARIEKKTAKLKGS 361
Query: 581 ERRTVAYHEAGHAVAGWFLEHCEP----LLKVTIVPRGTAALGFAQYVPSEN---LLRTK 633
E+ VA HEAGHAV G + + P + K+TI+PR ALGF Y PS N L
Sbjct: 362 EKAVVARHEAGHAVVGTAVANLLPGQPRVEKLTILPRSGGALGFT-YTPSTNEDRYLLII 538
Query: 634 EQLLDMTCMTLGGRAAEQVLI-GAISTGAQNDLEKVTKMTYAQVAIYG 680
++ LGGRAAE ++ G +ST A +D + T M Y +A+YG
Sbjct: 539 DEWHGRLITLLGGRAAEDIVYSGRVSTRALDDSTRATDMAYKAIAVYG 682
>BE661034 similar to SP|Q9ZPR1|C48B Cell division control protein 48 homolog
B (AtCDC48b). [Mouse-ear cress] {Arabidopsis thaliana},
partial (38%)
Length = 882
Score = 152 bits (385), Expect = 4e-37
Identities = 84/210 (40%), Positives = 121/210 (57%)
Frame = +1
Query: 343 KNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPS 402
K+ + +G +G LL GPPG KT LAKA A + F S+SG++ M+VG G +
Sbjct: 1 KHSAAFSXMGISPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSGAELYSMYVGEGEA 180
Query: 403 RVRNLFQEARQCAPSIVFIDEIDAIGRKRGRGGFSGSNDERESTLNQLLVEMDGFGTTAG 462
+R FQ AR APSI+F DE D + KRG S S E L+ LL E+DG G
Sbjct: 181 LLRKTFQRARLAAPSIIFFDEADVVAAKRGDSS-SNSATVGERLLSTLLTEIDGLEEAKG 357
Query: 463 VVVLAGTNRADILDNALLRPGRFDRTISIDVPDIKGRDQIFQIYLKKIKLDHEPSYYSQR 522
++VLA TNR +D AL+RPGRFD + + PD++ R +I ++ +K+K ++ +R
Sbjct: 358 ILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARHEILCVHTRKMKTGNDVDL--RR 531
Query: 523 LAALTPGFAGADIANVCNEAALIAARTDES 552
+A T F GA++ +C EA ++A R D S
Sbjct: 532 IAEDTELFTGAELEGLCKEAGIVALREDIS 621
>AW201375 homologue to GP|17065470|gb cell division protein FtsH-like protein
{Arabidopsis thaliana}, partial (20%)
Length = 385
Score = 152 bits (384), Expect = 6e-37
Identities = 77/131 (58%), Positives = 98/131 (74%)
Frame = +3
Query: 369 KTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIVFIDEIDAIG 428
KTLLA+A AGE+GVPF ++S S+F+E+ VG G +R+R+LF AR+ APSI+FIDE+DA+G
Sbjct: 3 KTLLARAVAGEAGVPFFTVSASEFVELVVGRGAARIRDLFNAARKFAPSIIFIDELDAVG 182
Query: 429 RKRGRGGFSGSNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRADILDNALLRPGRFDRT 488
KRGR NDER+ TLNQLL EMDGF + VVV+A TNR + LD AL RPGRF R
Sbjct: 183 GKRGR----SFNDERDQTLNQLLTEMDGFESEMRVVVIAATNRPEALDPALCRPGRFSRK 350
Query: 489 ISIDVPDIKGR 499
+ + PD +GR
Sbjct: 351 VYVGEPDEEGR 383
>TC220704 weakly similar to UP|Q94ES0 (Q94ES0) AAA-metalloprotease FtsH,
partial (14%)
Length = 917
Score = 147 bits (370), Expect = 2e-35
Identities = 76/115 (66%), Positives = 88/115 (76%)
Frame = +3
Query: 1 MIFSRIGRSLSRSSRVKNLLHGETRLGTLYGVSRTNVFVDDVEKGLGFVRGYVSSAIARN 60
MIFSRI RS+S SSR +NLLHG+ RLGT G RTN + E LG VRGYVSSA AR+
Sbjct: 366 MIFSRIARSVSSSSRARNLLHGDGRLGTHVGSPRTNACSEGAEGVLGSVRGYVSSARARS 545
Query: 61 NGFGSNLYDFKSIAANRMLHRMFSSESPKKKNYEKFYPKEKKEVPKGEEKKSESK 115
NGF SNL DFKS+AAN + R+F S++PKK+NY FYPKEKKEVPKG +KK ESK
Sbjct: 546 NGFVSNLPDFKSVAANPTIRRLFCSKAPKKENYGNFYPKEKKEVPKGNDKKYESK 710
>TC227714 similar to UP|C48C_ARATH (Q9SS94) Cell division control protein 48
homolog C (AtCDC48c), partial (22%)
Length = 918
Score = 144 bits (364), Expect = 1e-34
Identities = 88/222 (39%), Positives = 120/222 (53%), Gaps = 13/222 (5%)
Frame = +1
Query: 358 GALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPS 417
G LL GPPG GKTL+AKA A E+G F+ I G + + +VG VR +F AR CAP
Sbjct: 10 GFLLYGPPGCGKTLIAKAVANEAGATFIHIKGPELLNKYVGESELAVRTMFSRARTCAPC 189
Query: 418 IVFIDEIDAIGRKRGRGGFSGSNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRADILDN 477
I+F DEIDA+ KRG+ G G ER LNQLLVE+DG GV V+ TNR +++D
Sbjct: 190 ILFFDEIDALTTKRGKEG--GWVVER--LLNQLLVELDGAEQRKGVFVIGATNRPEVMDR 357
Query: 478 ALLRPGRFDRTISIDVPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIAN 537
A+LRPGRF + + + +P R I + +K +D + +GAD+A
Sbjct: 358 AVLRPGRFGKLLYVPLPSPDERVLILKALARKKAVDASVDLSAIAKMEACENLSGADLAA 537
Query: 538 VCNEAALIA--ARTDESQVTMD-----------HFEAAIDRI 566
+ NEAA+ A R + T D HFE A+ ++
Sbjct: 538 LMNEAAMAALEERLTSIETTCDTLTIKRTIKRHHFEVALSKV 663
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.316 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,491,347
Number of Sequences: 63676
Number of extensions: 344752
Number of successful extensions: 2461
Number of sequences better than 10.0: 149
Number of HSP's better than 10.0 without gapping: 2211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2354
length of query: 807
length of database: 12,639,632
effective HSP length: 105
effective length of query: 702
effective length of database: 5,953,652
effective search space: 4179463704
effective search space used: 4179463704
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Medicago: description of AC135467.11