BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134322.23 + phase: 0
(150 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203432 similar to UP|FER1_LYCES (Q43517) Ferredoxin I, chlorop... 201 1e-52
TC203256 similar to UP|Q6Q8B8 (Q6Q8B8) Chloroplast ferredoxin I,... 192 5e-50
TC203601 similar to UP|Q6Q8B8 (Q6Q8B8) Chloroplast ferredoxin I,... 191 9e-50
TC215068 similar to UP|FER1_LYCES (Q43517) Ferredoxin I, chlorop... 191 9e-50
TC207668 similar to UP|FER1_PEA (P09911) Ferredoxin I, chloropla... 187 2e-48
TC226241 similar to UP|FER3_MAIZE (P27788) Ferredoxin III, chlor... 155 9e-39
TC226243 similar to UP|FER3_MAIZE (P27788) Ferredoxin III, chlor... 153 3e-38
TC215718 similar to UP|Q39648 (Q39648) Non-photosynthetic ferred... 145 7e-36
CD394083 145 9e-36
TC203412 similar to UP|Q6Q8B8 (Q6Q8B8) Chloroplast ferredoxin I,... 145 9e-36
CA852999 142 5e-35
TC215719 similar to UP|Q39648 (Q39648) Non-photosynthetic ferred... 141 1e-34
TC203881 similar to UP|FERA_ALOMA (P81372) Ferredoxin A (Fd A), ... 137 3e-33
TC226242 similar to UP|Q9AUE1 (Q9AUE1) Ferredoxin, partial (59%) 119 7e-28
TC203844 similar to UP|Q6Q8B8 (Q6Q8B8) Chloroplast ferredoxin I,... 107 2e-24
TC203848 weakly similar to GB|AAC19282.1|3193298|T14P8 coded for... 70 9e-21
TC203835 homologue to GB|AAM65487.1|21593520|AY087939 chlorophyl... 95 1e-20
TC228962 similar to UP|O23344 (O23344) Ferredoxin (AT4G14890/DL3... 77 2e-15
TC215597 similar to UP|Q8YT08 (Q8YT08) Ferredoxin, partial (75%) 76 5e-15
CD393864 74 2e-14
>TC203432 similar to UP|FER1_LYCES (Q43517) Ferredoxin I, chloroplast
precursor, partial (78%)
Length = 739
Score = 201 bits (511), Expect = 1e-52
Identities = 104/151 (68%), Positives = 122/151 (79%), Gaps = 1/151 (0%)
Frame = +1
Query: 1 MATTPALYGTAVSTSFLRRQPMPVSISTTT-KAFPSGFGLKSKTGKRGDLAVAMATYKVK 59
MATT AL GT ++TSFL+RQ S++ T+ KA + FG+K G RG AMATYKVK
Sbjct: 52 MATTGALCGTMLNTSFLKRQ---ASVNMTSFKANAAVFGVK---GGRGGRVRAMATYKVK 213
Query: 60 LVTPEGTQEFDCPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVAAGAVDQSDGSFLDD 119
L+TPEG QEF+CP D+YILD AEE GIDLPYSCRAGSCS+CA KV +G +DQSDGSFLDD
Sbjct: 214 LITPEGEQEFECPDDIYILDQAEENGIDLPYSCRAGSCSACAAKVVSGKLDQSDGSFLDD 393
Query: 120 DQIEEGWVLTCVAYPTSDVTIETHKEEELTA 150
DQI+ G+VLTCVAYPTSD+ IETH+EEELTA
Sbjct: 394 DQIDAGFVLTCVAYPTSDIVIETHREEELTA 486
>TC203256 similar to UP|Q6Q8B8 (Q6Q8B8) Chloroplast ferredoxin I, partial
(81%)
Length = 1009
Score = 192 bits (488), Expect = 5e-50
Identities = 98/149 (65%), Positives = 112/149 (74%), Gaps = 1/149 (0%)
Frame = +1
Query: 1 MATTPALYGTAVSTSFLRRQPMPVSISTTTKAFPSG-FGLKSKTGKRGDLAVAMATYKVK 59
MATT AL GT VSTSF+R+QPM + K FP+ FGLK G RG MA+YKVK
Sbjct: 49 MATTAALSGTMVSTSFMRKQPMTTK---SLKTFPNALFGLK---GGRGGRVTCMASYKVK 210
Query: 60 LVTPEGTQEFDCPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVAAGAVDQSDGSFLDD 119
L+TPEG EF+CP DV+I+D AEE GI+LPYSCRAGSC SC GK+ G VDQSDGSFLDD
Sbjct: 211 LITPEGEVEFECPDDVFIVDKAEEEGIELPYSCRAGSCVSCVGKIVKGDVDQSDGSFLDD 390
Query: 120 DQIEEGWVLTCVAYPTSDVTIETHKEEEL 148
+QIE GWVLTCVA P SDV IETHK+ E+
Sbjct: 391 EQIESGWVLTCVALPRSDVVIETHKDGEI 477
>TC203601 similar to UP|Q6Q8B8 (Q6Q8B8) Chloroplast ferredoxin I, partial
(94%)
Length = 950
Score = 191 bits (486), Expect = 9e-50
Identities = 99/152 (65%), Positives = 114/152 (74%), Gaps = 4/152 (2%)
Frame = +1
Query: 1 MATTPALYGTAVSTSFLRRQPMPVSISTTTKAFPSG----FGLKSKTGKRGDLAVAMATY 56
MATT AL GT VSTSF+RRQPM +T+ K FP+ FGLKS G R MA+Y
Sbjct: 85 MATTAALSGTMVSTSFMRRQPMT---TTSLKTFPNVGEALFGLKSGRGGR---VTCMASY 246
Query: 57 KVKLVTPEGTQEFDCPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVAAGAVDQSDGSF 116
KVKL+TPEG EF+CP DV+I+D AE+ GI+LPYSCRAGSC SC GK+ G VDQSDGSF
Sbjct: 247 KVKLITPEGEVEFECPDDVFIVDKAEDEGIELPYSCRAGSCVSCVGKIVEGNVDQSDGSF 426
Query: 117 LDDDQIEEGWVLTCVAYPTSDVTIETHKEEEL 148
LDD+QI+ GWVLTCVA P SDV IETHKE E+
Sbjct: 427 LDDEQIDSGWVLTCVAQPRSDVVIETHKEGEI 522
>TC215068 similar to UP|FER1_LYCES (Q43517) Ferredoxin I, chloroplast
precursor, partial (78%)
Length = 731
Score = 191 bits (486), Expect = 9e-50
Identities = 94/150 (62%), Positives = 117/150 (77%)
Frame = +3
Query: 1 MATTPALYGTAVSTSFLRRQPMPVSISTTTKAFPSGFGLKSKTGKRGDLAVAMATYKVKL 60
MATT AL GT +S+SFLRR+ ++ T+ KAFP+ + G RG AMA++KVKL
Sbjct: 93 MATTAALCGTMMSSSFLRRK----AVVTSLKAFPNANAVFGVKGGRGGGVTAMASFKVKL 260
Query: 61 VTPEGTQEFDCPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVAAGAVDQSDGSFLDDD 120
+TPEG +EF+CP DVYILD AEE G++LPYSCRAGSCS CAGKV +G VD SD +FL+D+
Sbjct: 261 ITPEGEKEFECPDDVYILDQAEEEGLELPYSCRAGSCSVCAGKVVSGKVDNSDATFLEDE 440
Query: 121 QIEEGWVLTCVAYPTSDVTIETHKEEELTA 150
Q+E G+ LTCVAYPTSDV IETHKEE+L+A
Sbjct: 441 QLEAGFTLTCVAYPTSDVVIETHKEEDLSA 530
>TC207668 similar to UP|FER1_PEA (P09911) Ferredoxin I, chloroplast
precursor, partial (69%)
Length = 771
Score = 187 bits (475), Expect = 2e-48
Identities = 97/149 (65%), Positives = 113/149 (75%), Gaps = 1/149 (0%)
Frame = +1
Query: 1 MATTPALYGTAV-STSFLRRQPMPVSISTTTKAFPSGFGLKSKTGKRGDLAVAMATYKVK 59
MATTP L G+ + STSFLR+Q M KA FGLK G RG AMA+Y VK
Sbjct: 181 MATTPGLCGSVLLSTSFLRKQAMASVNMRMLKANAGVFGLK---GGRGGRVSAMASYNVK 351
Query: 60 LVTPEGTQEFDCPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVAAGAVDQSDGSFLDD 119
L+TPEG QEF+CP DV+IL+ AEE GIDLPYSC+AG+CSSCAGKV +G VDQSDGS+LDD
Sbjct: 352 LITPEGEQEFECPDDVFILEKAEEFGIDLPYSCKAGACSSCAGKVVSGKVDQSDGSYLDD 531
Query: 120 DQIEEGWVLTCVAYPTSDVTIETHKEEEL 148
QI G+VLTCVAYPTSDV I+TH+E+EL
Sbjct: 532 TQIGNGFVLTCVAYPTSDVVIQTHQEDEL 618
>TC226241 similar to UP|FER3_MAIZE (P27788) Ferredoxin III, chloroplast
precursor (Fd III), partial (72%)
Length = 764
Score = 155 bits (391), Expect = 9e-39
Identities = 74/121 (61%), Positives = 95/121 (78%), Gaps = 1/121 (0%)
Frame = +1
Query: 29 TTKAFPSGFGLKSKTGKRGDLAVAMATYKVKLVTPEGTQ-EFDCPSDVYILDHAEEVGID 87
+ K+ FGLKS + R AMA+YKVKL+ P+GT+ EF+ D YILD AE G++
Sbjct: 199 SVKSISRSFGLKSSSSFR---VTAMASYKVKLIGPDGTENEFEATDDTYILDAAESAGVE 369
Query: 88 LPYSCRAGSCSSCAGKVAAGAVDQSDGSFLDDDQIEEGWVLTCVAYPTSDVTIETHKEEE 147
LPYSCRAG+CS+CAGK+ AG+VDQSDGSFLDD+Q++EG+VLTCV+YPT+D IETHKE +
Sbjct: 370 LPYSCRAGACSTCAGKIVAGSVDQSDGSFLDDNQLKEGFVLTCVSYPTADCVIETHKEGD 549
Query: 148 L 148
L
Sbjct: 550 L 552
>TC226243 similar to UP|FER3_MAIZE (P27788) Ferredoxin III, chloroplast
precursor (Fd III), partial (66%)
Length = 1112
Score = 153 bits (386), Expect = 3e-38
Identities = 73/121 (60%), Positives = 95/121 (78%), Gaps = 1/121 (0%)
Frame = +1
Query: 29 TTKAFPSGFGLKSKTGKRGDLAVAMATYKVKLVTPEGTQ-EFDCPSDVYILDHAEEVGID 87
+ K+ FGLKS + R AMA+YKVKL+ P+GT+ EF+ D YILD AE G++
Sbjct: 607 SVKSVSRSFGLKSASSFR---VTAMASYKVKLIGPDGTENEFEATDDTYILDAAESAGVE 777
Query: 88 LPYSCRAGSCSSCAGKVAAGAVDQSDGSFLDDDQIEEGWVLTCVAYPTSDVTIETHKEEE 147
LPYSCRAG+CS+CAGK+ +G+VDQSDGSFLDD+Q++EG+VLTCV+YPT+D IETHKE +
Sbjct: 778 LPYSCRAGACSTCAGKIVSGSVDQSDGSFLDDNQLKEGFVLTCVSYPTADCVIETHKEGD 957
Query: 148 L 148
L
Sbjct: 958 L 960
>TC215718 similar to UP|Q39648 (Q39648) Non-photosynthetic ferredoxin
precursor, partial (84%)
Length = 924
Score = 145 bits (366), Expect = 7e-36
Identities = 78/147 (53%), Positives = 101/147 (68%), Gaps = 1/147 (0%)
Frame = +1
Query: 3 TTPALYGTAVSTSFLRRQPMPVSISTTTKAFPSGFGLKSKTGKRGDLAVAMATYKVKLVT 62
TTPA A++ S P S+ + K FGLKS + + AMA YKVKL+
Sbjct: 259 TTPARRSCALTKS-------PSSLRSV-KNVSKVFGLKSSSFR----VSAMAVYKVKLIG 402
Query: 63 PEGTQ-EFDCPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVAAGAVDQSDGSFLDDDQ 121
P+G + EF+ P D YILD AE G++LPYSCRAG+CS+CAG+V +G+VDQ+D SFLDD Q
Sbjct: 403 PDGEENEFEAPDDTYILDSAENAGVELPYSCRAGACSTCAGQVVSGSVDQADQSFLDDHQ 582
Query: 122 IEEGWVLTCVAYPTSDVTIETHKEEEL 148
IE+G++LTCV+YP SD I THKEE+L
Sbjct: 583 IEKGYLLTCVSYPKSDCVIHTHKEEDL 663
>CD394083
Length = 691
Score = 145 bits (365), Expect = 9e-36
Identities = 77/123 (62%), Positives = 90/123 (72%), Gaps = 4/123 (3%)
Frame = +2
Query: 1 MATTPALYGTAVSTSFLRRQPMPVSISTTTKAFPSG----FGLKSKTGKRGDLAVAMATY 56
MATT AL GT VSTSF+RRQPM +T+ K FP+ FGLKS G R MA+Y
Sbjct: 341 MATTAALSGTMVSTSFMRRQPMT---TTSLKTFPNVGEALFGLKSGRGGR---VTCMASY 502
Query: 57 KVKLVTPEGTQEFDCPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVAAGAVDQSDGSF 116
KVKL+TPEG EF+CP +V+I+D AE+ GI+LPYSCRAGSC SC GK+ G VDQSDGSF
Sbjct: 503 KVKLITPEGEVEFECPDNVFIVDKAEDEGIELPYSCRAGSCVSCVGKIVEGNVDQSDGSF 682
Query: 117 LDD 119
LDD
Sbjct: 683 LDD 691
>TC203412 similar to UP|Q6Q8B8 (Q6Q8B8) Chloroplast ferredoxin I, partial
(72%)
Length = 822
Score = 145 bits (365), Expect = 9e-36
Identities = 76/135 (56%), Positives = 91/135 (67%), Gaps = 1/135 (0%)
Frame = +3
Query: 1 MATTPALYGTAVSTSFLRRQPMPVSISTTTKAFPS-GFGLKSKTGKRGDLAVAMATYKVK 59
+ T AL GT VSTSF+RRQPM +T+ K FP+ G L RG MA+YKVK
Sbjct: 414 VCATAALSGTMVSTSFMRRQPMT---TTSLKTFPNVGEALFGLNSGRGGRVTCMASYKVK 584
Query: 60 LVTPEGTQEFDCPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVAAGAVDQSDGSFLDD 119
L+TPEG EF+CP DV+ +D AE G DLPYSCRAGSC SCAG + GAV QSDGSF D
Sbjct: 585 LITPEGEVEFECPDDVFSVDKAEYGGTDLPYSCRAGSCVSCAG*IVVGAVVQSDGSFPHD 764
Query: 120 DQIEEGWVLTCVAYP 134
+ + GWV++CVA P
Sbjct: 765 SRRDRGWVVSCVAPP 809
>CA852999
Length = 545
Score = 142 bits (359), Expect = 5e-35
Identities = 68/114 (59%), Positives = 89/114 (77%), Gaps = 1/114 (0%)
Frame = +2
Query: 29 TTKAFPSGFGLKSKTGKRGDLAVAMATYKVKLVTPEGTQ-EFDCPSDVYILDHAEEVGID 87
+ K+ FGLKS + R AMA+YKVKL+ P+GT+ EF+ D YILD AE G++
Sbjct: 212 SVKSVSRSFGLKSASSFR---VTAMASYKVKLIGPDGTENEFEATDDTYILDAAESAGVE 382
Query: 88 LPYSCRAGSCSSCAGKVAAGAVDQSDGSFLDDDQIEEGWVLTCVAYPTSDVTIE 141
LPYSCRAG+CS+CAGK+ +G+VDQSDGSFLDD+Q++EG+VLTCV+YPT+D IE
Sbjct: 383 LPYSCRAGACSTCAGKIVSGSVDQSDGSFLDDNQLKEGFVLTCVSYPTADCVIE 544
>TC215719 similar to UP|Q39648 (Q39648) Non-photosynthetic ferredoxin
precursor, partial (84%)
Length = 853
Score = 141 bits (355), Expect = 1e-34
Identities = 68/113 (60%), Positives = 87/113 (76%), Gaps = 1/113 (0%)
Frame = +2
Query: 37 FGLKSKTGKRGDLAVAMATYKVKLVTPEGTQ-EFDCPSDVYILDHAEEVGIDLPYSCRAG 95
FGLKS + + AMA YKVKL+ P+G + EF+ P D YILD AE G++LPYSCRAG
Sbjct: 266 FGLKSSSFR----VSAMAVYKVKLIGPDGEENEFEAPDDTYILDAAENAGVELPYSCRAG 433
Query: 96 SCSSCAGKVAAGAVDQSDGSFLDDDQIEEGWVLTCVAYPTSDVTIETHKEEEL 148
+CS+CAG V +G+VDQ+D SFLDD QI++G++LTCV+YP SD I THKEE+L
Sbjct: 434 ACSTCAGHVVSGSVDQADQSFLDDHQIKKGYLLTCVSYPKSDCVIHTHKEEDL 592
>TC203881 similar to UP|FERA_ALOMA (P81372) Ferredoxin A (Fd A), partial
(79%)
Length = 1057
Score = 137 bits (344), Expect = 3e-33
Identities = 62/85 (72%), Positives = 70/85 (81%)
Frame = +1
Query: 64 EGTQEFDCPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVAAGAVDQSDGSFLDDDQIE 123
EG EF+CP DV+I+D AEE GI+LPYSCRAGSC SC GK+ G VDQSDGSFLDD+QIE
Sbjct: 160 EGEVEFECPDDVFIVDKAEEEGIELPYSCRAGSCVSCVGKIVKGDVDQSDGSFLDDEQIE 339
Query: 124 EGWVLTCVAYPTSDVTIETHKEEEL 148
GWVLTCVA P SDV IETHK+ E+
Sbjct: 340 SGWVLTCVALPRSDVVIETHKDGEI 414
>TC226242 similar to UP|Q9AUE1 (Q9AUE1) Ferredoxin, partial (59%)
Length = 450
Score = 119 bits (297), Expect = 7e-28
Identities = 57/98 (58%), Positives = 75/98 (76%), Gaps = 1/98 (1%)
Frame = +3
Query: 29 TTKAFPSGFGLKSKTGKRGDLAVAMATYKVKLVTPEGTQ-EFDCPSDVYILDHAEEVGID 87
+ K+ FGLKS + R AMA+YKVKL+ P+GT+ EF+ D YILD AE G++
Sbjct: 165 SVKSVSRSFGLKSASSFR---VTAMASYKVKLIGPDGTENEFEATDDTYILDAAESAGVE 335
Query: 88 LPYSCRAGSCSSCAGKVAAGAVDQSDGSFLDDDQIEEG 125
LPYSCRAG+CS+CAGK+ +G+VDQSDGSFLDD+Q++EG
Sbjct: 336 LPYSCRAGACSTCAGKIVSGSVDQSDGSFLDDNQLKEG 449
>TC203844 similar to UP|Q6Q8B8 (Q6Q8B8) Chloroplast ferredoxin I, partial
(44%)
Length = 727
Score = 107 bits (267), Expect = 2e-24
Identities = 64/139 (46%), Positives = 84/139 (60%), Gaps = 1/139 (0%)
Frame = +2
Query: 6 ALYGTAVSTSFLRRQPMPVSISTTTKAFPSG-FGLKSKTGKRGDLAVAMATYKVKLVTPE 64
AL GT VSTSF+R+QPM + K FP+ FGLK G RG MA+YKVKL+TPE
Sbjct: 323 ALSGTMVSTSFMRKQPMTTK---SLKTFPNALFGLK---GGRGGRVTCMASYKVKLITPE 484
Query: 65 GTQEFDCPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVAAGAVDQSDGSFLDDDQIEE 124
EF+CP +V+I++ AEE I LPYS + S S K+ V+ S SFL++ QI+
Sbjct: 485 REVEFECPDNVFIINKAEEQSIKLPYSYKTYSYISYIKKIIK*NVNHSHNSFLNN*QIQN 664
Query: 125 GWVLTCVAYPTSDVTIETH 143
+LT + P S + I TH
Sbjct: 665 K*ILTYITLPISHILINTH 721
>TC203848 weakly similar to GB|AAC19282.1|3193298|T14P8 coded for by A.
thaliana cDNA R65118; coded for by A. thaliana cDNA
T43996 {Arabidopsis thaliana;} , partial (79%)
Length = 1128
Score = 70.1 bits (170), Expect(2) = 9e-21
Identities = 31/42 (73%), Positives = 35/42 (82%)
Frame = -1
Query: 103 KVAAGAVDQSDGSFLDDDQIEEGWVLTCVAYPTSDVTIETHK 144
K+ G VDQSDGSFLDD+QI+ GWVLTCVA P SDV IETH+
Sbjct: 297 KIVEGNVDQSDGSFLDDEQIDSGWVLTCVAQPRSDVVIETHQ 172
Score = 45.8 bits (107), Expect(2) = 9e-21
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = -3
Query: 77 ILDHAEEVGIDLPYSCRAGSCSSCAGK 103
I AE+ GI+LPYSCRAGSC SCAGK
Sbjct: 376 IRHEAEDEGIELPYSCRAGSCLSCAGK 296
>TC203835 homologue to GB|AAM65487.1|21593520|AY087939 chlorophyll
a/b-binding protein-like {Arabidopsis thaliana;} ,
partial (30%)
Length = 678
Score = 95.1 bits (235), Expect = 1e-20
Identities = 55/103 (53%), Positives = 64/103 (61%), Gaps = 1/103 (0%)
Frame = +1
Query: 1 MATTPALYGTAVSTSFLRRQPMPVSISTTTKAFPS-GFGLKSKTGKRGDLAVAMATYKVK 59
MATT AL GT VSTSF+RRQPM +T+ K FP+ G L RG MA KV
Sbjct: 379 MATTAALSGTMVSTSFMRRQPMT---TTSLKTFPNVGEALLGLKSGRGGRVTCMAYNKVL 549
Query: 60 LVTPEGTQEFDCPSDVYILDHAEEVGIDLPYSCRAGSCSSCAG 102
L+TP E +CP D YI+D AE+ GI L YSCRAG+C SC G
Sbjct: 550 LITPV*EMELECPYDDYIVDKAEDDGI*LGYSCRAGACVSCGG 678
>TC228962 similar to UP|O23344 (O23344) Ferredoxin (AT4G14890/DL3485W),
partial (68%)
Length = 677
Score = 77.4 bits (189), Expect = 2e-15
Identities = 39/100 (39%), Positives = 59/100 (59%)
Frame = +1
Query: 49 LAVAMATYKVKLVTPEGTQEFDCPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVAAGA 108
L V++ +YKV + + E + D IL A + G+ +P+ C+ G C +C ++ +G+
Sbjct: 181 LRVSVRSYKVVIEHDGESTEVEVEPDETILSKALDSGLSVPHDCKLGVCMTCPARLISGS 360
Query: 109 VDQSDGSFLDDDQIEEGWVLTCVAYPTSDVTIETHKEEEL 148
VDQSDG L DD +E G+ L C AYP SD I+ E+EL
Sbjct: 361 VDQSDG-MLSDDVVERGYALLCAAYPQSDCHIKIIPEDEL 477
>TC215597 similar to UP|Q8YT08 (Q8YT08) Ferredoxin, partial (75%)
Length = 804
Score = 76.3 bits (186), Expect = 5e-15
Identities = 50/149 (33%), Positives = 76/149 (50%), Gaps = 17/149 (11%)
Frame = +2
Query: 17 LRRQPMPVSISTTTKAFPSGFGLKSKTGKRGDLAVAMA---------------TYKVKLV 61
LR MP ++ ++FPS K+ T K +L A+A T+KV +
Sbjct: 29 LRIPGMP--LTNQHQSFPSNTRRKATTAK-AELGTAVARTGGAGYQSPSVDVPTHKVTVH 199
Query: 62 TPEG--TQEFDCPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVAAGAVDQSDGSFLDD 119
+ EF P D YIL AE I LP++CR G C+SCA ++ G + Q + +
Sbjct: 200 DRQRGIVHEFVVPEDQYILHTAEAQNITLPFACRHGCCTSCAVRIKKGQIRQPEALGISA 379
Query: 120 DQIEEGWVLTCVAYPTSDVTIETHKEEEL 148
+ ++G+ L CV +PTSDV +ET E+E+
Sbjct: 380 ELRDKGYALLCVGFPTSDVEVETQDEDEV 466
>CD393864
Length = 624
Score = 74.3 bits (181), Expect = 2e-14
Identities = 34/80 (42%), Positives = 49/80 (60%)
Frame = -3
Query: 68 EFDCPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVAAGAVDQSDGSFLDDDQIEEGWV 127
EF P D YIL AE I LP++CR G C+SCA ++ G + Q + + + ++G+
Sbjct: 568 EFVVPEDQYILHTAEAQNITLPFACRHGCCTSCAVRIKKGPIRQPEALGISAELRDKGYA 389
Query: 128 LTCVAYPTSDVTIETHKEEE 147
L CV +PTSDV +ET E+E
Sbjct: 388 LLCVGFPTSDVEVETQDEDE 329
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.130 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,428,319
Number of Sequences: 63676
Number of extensions: 84776
Number of successful extensions: 364
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of query: 150
length of database: 12,639,632
effective HSP length: 89
effective length of query: 61
effective length of database: 6,972,468
effective search space: 425320548
effective search space used: 425320548
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)
Medicago: description of AC134322.23