BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC131249.9 - phase: 0 /pseudo
(421 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CO983030 41 0.001
TC216149 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, ... 39 0.003
TC216150 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, ... 39 0.004
TC220333 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, ... 39 0.006
TC205778 weakly similar to UP|Q7TPA6 (Q7TPA6) Ab1-042, partial (... 37 0.013
CO978729 36 0.028
TC204091 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1... 36 0.028
TC221182 weakly similar to UP|ENAH_MOUSE (Q03173) Enabled protei... 36 0.028
TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%) 36 0.037
BG363586 35 0.049
TC213554 weakly similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protei... 35 0.083
TC209343 35 0.083
TC228262 similar to UP|Q9MAL4 (Q9MAL4) F27F5.2, partial (4%) 34 0.11
BG406479 34 0.14
TC227637 weakly similar to UP|Q9SYP0 (Q9SYP0) F9H16.4 protein, p... 34 0.14
CD408465 34 0.14
CF922454 33 0.18
TC205780 weakly similar to UP|Q7TPA6 (Q7TPA6) Ab1-042, partial (... 33 0.24
TC214650 similar to UP|Q9LJH8 (Q9LJH8) RNA binding protein nucle... 33 0.24
BG551638 33 0.24
>CO983030
Length = 505
Score = 40.8 bits (94), Expect = 0.001
Identities = 16/41 (39%), Positives = 31/41 (75%)
Frame = +2
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKK 273
K++ K+ ++K +K+K+KK+K+ +K+K++K KK +NKK
Sbjct: 194 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKQKKKKXKNKK 316
>TC216149 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, partial (4%)
Length = 2040
Score = 39.3 bits (90), Expect = 0.003
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +1
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRK-ERKFHGKKRRNKK 273
K+R K ++RK KRKR+KRK RK+K RK KK+R +K
Sbjct: 1261 KKRRKRSQRKRVKPKRKRRKRKSLRKKKRRRKSQRKKKRRRK 1386
Score = 35.4 bits (80), Expect = 0.049
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +1
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFH 265
KRR +++ RK R++ ++K+KR RKR+ RK H
Sbjct: 1309 KRRKRKSLRKKKRRRKSQRKKKRRRKRRRRKRH 1407
Score = 33.5 bits (75), Expect = 0.18
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNK 272
KR ++ RK RKR + KRKR +++ RK KKRR K
Sbjct: 1246 KRSQRKKRRKRSQRKRVKPKRKRRKRKSLRK---KKRRRK 1356
Score = 33.5 bits (75), Expect = 0.18
Identities = 18/44 (40%), Positives = 28/44 (62%), Gaps = 3/44 (6%)
Frame = +1
Query: 233 KRRSKENERKICARKRKRKKRKR---NRKRKERKFHGKKRRNKK 273
++RS +R ++RKR +RKR RKR++RK KK+R +K
Sbjct: 1225 QQRSPRRKRSQRKKRRKRSQRKRVKPKRKRRKRKSLRKKKRRRK 1356
>TC216150 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, partial (5%)
Length = 928
Score = 38.9 bits (89), Expect = 0.004
Identities = 17/41 (41%), Positives = 28/41 (67%)
Frame = +1
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKK 273
++R K ++R+ KRKR+KRK RK+K RK +K++ +K
Sbjct: 427 RKRRKRSQRRRVKPKRKRRKRKSLRKKKRRKKRQRKKKRRK 549
Score = 35.8 bits (81), Expect = 0.037
Identities = 19/48 (39%), Positives = 30/48 (61%), Gaps = 5/48 (10%)
Frame = +1
Query: 233 KRRSKENERKICA-RKRKRK----KRKRNRKRKERKFHGKKRRNKKCH 275
KRR + R++ RKR+++ K+KR +KR+ +K KKRR +K H
Sbjct: 430 KRRKRSQRRRVKPKRKRRKRKSLRKKKRRKKRQRKKKRRKKRRRRKRH 573
>TC220333 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, partial (3%)
Length = 536
Score = 38.5 bits (88), Expect = 0.006
Identities = 16/40 (40%), Positives = 28/40 (70%)
Frame = +2
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNK 272
+RR + E+ +KRKRK+RKR R++K+RK +++ N+
Sbjct: 104 ERRKERGEKGRKKKKRKRKRRKRRRRKKKRKRRRRRKNNR 223
Score = 36.2 bits (82), Expect = 0.028
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = +2
Query: 232 CKRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKK 273
C+RR + + + ++K+K++++ RKR+ RK K+RR +K
Sbjct: 89 CQRREERRKERGEKGRKKKKRKRKRRKRRRRKKKRKRRRRRK 214
>TC205778 weakly similar to UP|Q7TPA6 (Q7TPA6) Ab1-042, partial (16%)
Length = 2225
Score = 37.4 bits (85), Expect = 0.013
Identities = 19/55 (34%), Positives = 32/55 (57%), Gaps = 1/55 (1%)
Frame = +1
Query: 233 KRRSKENERKICARKRKRKKRK-RNRKRKERKFHGKKRRNKKCHCHQAAPIFAIL 286
+R + R+ RKR++ KRK R R+R++RK GK+R+ Q P+ A++
Sbjct: 1183 RRTGRRRGRRRGRRKRRKWKRKRRKRRRRKRKREGKRRKKLNLKKEQQQPLMALM 1347
>CO978729
Length = 377
Score = 36.2 bits (82), Expect = 0.028
Identities = 16/39 (41%), Positives = 29/39 (74%)
Frame = +2
Query: 235 RSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKK 273
R K+ ++K +K+K+KK+K+N+K+K++K K +NKK
Sbjct: 110 REKKKKKK---KKKKKKKKKKNQKKKKKKKKKKXXKNKK 217
>TC204091 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(70%)
Length = 2075
Score = 36.2 bits (82), Expect = 0.028
Identities = 16/41 (39%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Frame = +3
Query: 234 RRSKENERKICARK-RKRKKRKRNRKRKERKFHGKKRRNKK 273
+ +K+++RK+ ++ RKR KRK+ +KR+ RK +K++ KK
Sbjct: 120 KNTKKSKRKLRKKR*RKRSKRKKKKKRRTRKKRRRKKKKKK 242
>TC221182 weakly similar to UP|ENAH_MOUSE (Q03173) Enabled protein homolog
(NPC derived proline-rich protein 1) (NDPP-1), partial
(5%)
Length = 446
Score = 36.2 bits (82), Expect = 0.028
Identities = 13/44 (29%), Positives = 26/44 (58%)
Frame = -1
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKKCHC 276
+RRS+ R + ++RKR++R ++++ RK +R +C C
Sbjct: 185 RRRSRRRRRWLWRKRRKRRRRMMRKRKRRRKKKRNRRSGTRCRC 54
>TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%)
Length = 1005
Score = 35.8 bits (81), Expect = 0.037
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +1
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKER 262
KRR+K+ E + R+RKRK ++R RKRK R
Sbjct: 322 KRRTKKKETVMVKRRRKRKIKRRRRKRKRR 411
Score = 31.6 bits (70), Expect = 0.70
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 234 RRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKK 273
RRS+ + KR+RK+RKR RK + K ++ R KK
Sbjct: 91 RRSRGKKMMGRMMKRRRKRRKRRRKTRMAKLMQRRSRRKK 210
Score = 30.0 bits (66), Expect = 2.0
Identities = 17/48 (35%), Positives = 24/48 (49%), Gaps = 7/48 (14%)
Frame = +1
Query: 233 KRRSKENERKICARKRKRK-------KRKRNRKRKERKFHGKKRRNKK 273
KRR K K+ R+ +RK KR+R R++ K +K R KK
Sbjct: 151 KRRRKTRMAKLMQRRSRRKKMMGRMMKRRRKRRKSMTKLMXRKSRGKK 294
Score = 29.6 bits (65), Expect = 2.7
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNK 272
+RRS+ + KR+RK+RK K RK GKK K
Sbjct: 187 QRRSRRKKMMGRMMKRRRKRRKSMTKLMXRKSRGKKMMGK 306
>BG363586
Length = 380
Score = 35.4 bits (80), Expect = 0.049
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +1
Query: 305 C*IAFAGV*GFVP*RDTKWAATFKRY*TSH*PHSRSIFTKSSSLPKQSPTNT 356
C AG+* + D+ W ATFK++ TS * SRS ++L +Q+P ++
Sbjct: 82 CSTLIAGI*RCLSQGDSSWTATFKKHRTSS*SPSRSFIA*QANLQQQAPRDS 237
>TC213554 weakly similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1,
partial (18%)
Length = 451
Score = 34.7 bits (78), Expect = 0.083
Identities = 18/41 (43%), Positives = 27/41 (64%)
Frame = +3
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKK 273
K+RSK RK RKR ++K+K+ R ++ RK KK++ KK
Sbjct: 192 KKRSKRKLRKKR*RKRSKRKKKKRRTKRTRK---KKKKTKK 305
>TC209343
Length = 613
Score = 34.7 bits (78), Expect = 0.083
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +3
Query: 248 RKRKKRKRNRKRKERKFHGKKRRNKK 273
RKRKK+KR RKR +R G ++RN+K
Sbjct: 291 RKRKKKKRKRKRWKRNQKGSQKRNRK 368
Score = 30.8 bits (68), Expect = 1.2
Identities = 14/43 (32%), Positives = 25/43 (57%)
Frame = +3
Query: 241 RKICARKRKRKKRKRNRKRKERKFHGKKRRNKKCHCHQAAPIF 283
RK +KRKRK+ KRN+K +++ +K + + ++P F
Sbjct: 291 RKRKKKKRKRKRWKRNQKGSQKRNRKRKNKIMSSYFSNSSPFF 419
>TC228262 similar to UP|Q9MAL4 (Q9MAL4) F27F5.2, partial (4%)
Length = 657
Score = 34.3 bits (77), Expect = 0.11
Identities = 15/41 (36%), Positives = 26/41 (62%)
Frame = +3
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKK 273
++R +E +K R+ KRK++++ K +ER+ K RNKK
Sbjct: 39 RKREEEKAKKEKEREEKRKEKEKKEKDREREKDKSKERNKK 161
Score = 30.0 bits (66), Expect = 2.0
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 240 ERKICARKRKRKKRKRNRKRKERKFHGKKR 269
+R+I + KRKR KR++ KR R+ KKR
Sbjct: 28 KRRIASVKRKRLKRRKKEKRNGRRRKKKKR 117
>BG406479
Length = 343
Score = 33.9 bits (76), Expect = 0.14
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 234 RRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKK 273
RR + +IC +R+R+ + RKR++ KKRR KK
Sbjct: 146 RRXMGGKEQICGHRRRRRFEREKRKRRDWAATEKKRREKK 27
>TC227637 weakly similar to UP|Q9SYP0 (Q9SYP0) F9H16.4 protein, partial (8%)
Length = 1330
Score = 33.9 bits (76), Expect = 0.14
Identities = 15/42 (35%), Positives = 22/42 (51%)
Frame = +2
Query: 237 KENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKKCHCHQ 278
+E K C + KR + +R K +E K GKK+ CHC +
Sbjct: 797 REGPTKGCLKGTKRSRTEREGKGEESKEEGKKKGRFCCHCRE 922
>CD408465
Length = 630
Score = 33.9 bits (76), Expect = 0.14
Identities = 17/37 (45%), Positives = 23/37 (61%)
Frame = -3
Query: 320 DTKWAATFKRY*TSH*PHSRSIFTKSSSLPKQSPTNT 356
D+ W ATFKR+ TS * RS T ++L K SP ++
Sbjct: 616 DSSWTATFKRHRTSS*SPPRSFIT*QANLQKLSPRDS 506
>CF922454
Length = 785
Score = 33.5 bits (75), Expect = 0.18
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Frame = +3
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNK-----KCH-CHQ 278
KRR R+ R R+R+KRKR R+R++++ K R K CH C Q
Sbjct: 258 KRRRGRRGRRRRRRGRRRRKRKRKRRRRKKRNRQKSSRVKPQIMTSCHLCQQ 413
>TC205780 weakly similar to UP|Q7TPA6 (Q7TPA6) Ab1-042, partial (16%)
Length = 454
Score = 33.1 bits (74), Expect = 0.24
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 233 KRRSKENERKICARKRKRKKRKRNRKRKERK 263
+RR + RK ++RKR++RKR R+ K RK
Sbjct: 352 RRRGRRKRRKWKRKRRKRRRRKRKREGKRRK 444
Score = 32.3 bits (72), Expect = 0.41
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +1
Query: 233 KRRSKENERKICARKRKRKKRK-RNRKRKERKFHGKKRR 270
+R + R+ RKR++ KRK R R+R++RK GK+R+
Sbjct: 328 RRTGRRRGRRRGRRKRRKWKRKRRKRRRRKRKREGKRRK 444
Score = 28.5 bits (62), Expect = 5.9
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 235 RSKENERKICARKRKRKKRKRNRKRKER 262
R K + K RKR+R+KRKR KR+++
Sbjct: 364 RRKRRKWKRKRRKRRRRKRKREGKRRKK 447
>TC214650 similar to UP|Q9LJH8 (Q9LJH8) RNA binding protein nucleolysin;
oligouridylate binding protein (AT3g14100/MAG2_5),
partial (93%)
Length = 1684
Score = 33.1 bits (74), Expect = 0.24
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 5/47 (10%)
Frame = -1
Query: 232 CKRR-----SKENERKICARKRKRKKRKRNRKRKERKFHGKKRRNKK 273
C+RR SKE E K+ +++K+ K ++N+KR++RK +R K+
Sbjct: 187 CRRRRINGDSKEMEAKLKNKRKKKTK*RKNKKREKRKRKTLEREGKE 47
>BG551638
Length = 106
Score = 33.1 bits (74), Expect = 0.24
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +3
Query: 241 RKICARKRKRKKRKRNRKRKERKFHGKKR 269
R + +K+KRK++KR K+K++K GKK+
Sbjct: 12 RGLIRKKKKRKEKKRKEKKKKKKKKGKKK 98
Score = 29.6 bits (65), Expect = 2.7
Identities = 11/25 (44%), Positives = 20/25 (80%)
Frame = +2
Query: 240 ERKICARKRKRKKRKRNRKRKERKF 264
++K +K+KRKK+K+ +KRK++ F
Sbjct: 29 KKKKKRKKKKRKKKKKKKKRKKKNF 103
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.385 0.173 0.749
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,236,261
Number of Sequences: 63676
Number of extensions: 266991
Number of successful extensions: 7713
Number of sequences better than 10.0: 123
Number of HSP's better than 10.0 without gapping: 3562
Number of HSP's successfully gapped in prelim test: 225
Number of HSP's that attempted gapping in prelim test: 3640
Number of HSP's gapped (non-prelim): 4285
length of query: 421
length of database: 12,639,632
effective HSP length: 100
effective length of query: 321
effective length of database: 6,272,032
effective search space: 2013322272
effective search space used: 2013322272
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 13 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (22.0 bits)
S2: 60 (27.7 bits)
Medicago: description of AC131249.9