BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC131239.17 + phase: 0 /pseudo
(892 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC217570 similar to UP|PNK1_ARATH (Q8L5Y9) Probable pantothenate... 415 e-116
TC207427 similar to UP|PNK1_ARATH (Q8L5Y9) Probable pantothenate... 246 1e-93
TC226400 similar to UP|PNK1_ARATH (Q8L5Y9) Probable pantothenate... 331 1e-90
CA801632 249 3e-66
TC207426 similar to UP|PNK1_ARATH (Q8L5Y9) Probable pantothenate... 234 2e-61
BM176984 similar to GP|3249085|gb| T13D8.31 {Arabidopsis thalian... 231 8e-61
TC227659 similar to GB|AAN28872.1|23506025|AY143933 At4g35360/F2... 226 4e-59
TC227488 195 6e-50
TC217571 similar to UP|PNK1_ARATH (Q8L5Y9) Probable pantothenate... 175 7e-44
TC227487 similar to GB|AAN28872.1|23506025|AY143933 At4g35360/F2... 166 4e-41
TC211950 similar to UP|PNK1_ARATH (Q8L5Y9) Probable pantothenate... 152 8e-37
TC207428 similar to UP|PNK1_ARATH (Q8L5Y9) Probable pantothenate... 145 6e-35
AI960902 112 7e-25
TC227486 104 1e-22
TC226401 similar to UP|Q7X998 (Q7X998) MRNA-binding protein (Fra... 97 2e-20
BE801430 68 2e-11
TC212740 weakly similar to UP|Q8S9I4 (Q8S9I4) AT4g02720/T10P11_1... 33 0.72
TC219594 similar to UP|Q8W4B1 (Q8W4B1) RNA-binding protein-like ... 32 0.94
TC214656 similar to UP|Q8LCB0 (Q8LCB0) Sterol-C-methyltransferas... 29 8.0
AW704071 similar to GP|11558192|emb transcription factor (E2F) {... 29 8.0
>TC217570 similar to UP|PNK1_ARATH (Q8L5Y9) Probable pantothenate kinase 1
(Pantothenic acid kinase 1) , partial (25%)
Length = 873
Score = 415 bits (1067), Expect = e-116
Identities = 209/226 (92%), Positives = 218/226 (95%), Gaps = 1/226 (0%)
Frame = +2
Query: 668 RACVDLYHKGTIIEIYRMSRNKMRRPWRVDDFDLFKERMLGTGDKKKAPHRRALLFVDNS 727
RACVD YHKGTIIEIYRMSRNKM+RPWRVDDFD FK+RMLGTGDKK PHRRALLFVDN+
Sbjct: 2 RACVDFYHKGTIIEIYRMSRNKMQRPWRVDDFDAFKQRMLGTGDKKPPPHRRALLFVDNA 181
Query: 728 GADIVLGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAEA 787
GADIVLGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAE+
Sbjct: 182 GADIVLGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAES 361
Query: 788 GGLLVDAMINT-DSSKENSSSVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLIILEGM 846
GGLLVDAM NT DS +ENSSSVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLIILEGM
Sbjct: 362 GGLLVDAMTNTLDSPRENSSSVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLIILEGM 541
Query: 847 GRSLHTNLYAQFKCDALKLAMVKNQRLAEKLIKGNIYDCICKYQPA 892
GR+LHTNL A+F+CDALKLAMVKNQRLAEKLIKGNIYDCICKY+PA
Sbjct: 542 GRALHTNLNARFQCDALKLAMVKNQRLAEKLIKGNIYDCICKYEPA 679
>TC207427 similar to UP|PNK1_ARATH (Q8L5Y9) Probable pantothenate kinase 1
(Pantothenic acid kinase 1) , partial (25%)
Length = 756
Score = 246 bits (627), Expect(2) = 1e-93
Identities = 112/144 (77%), Positives = 135/144 (92%)
Frame = +3
Query: 168 KATGGGAYKFTDLFKEKLGVSLDKEDEMNCLVAGANFLLKAIRHEAFTHMEGQKEFVQID 227
KATGGGAYK+ DLFKE+LG+ LDKEDEM+CLVAGANFLL+ + EAFT+M QK+FVQID
Sbjct: 105 KATGGGAYKYPDLFKERLGIILDKEDEMDCLVAGANFLLEVVHQEAFTYMGDQKQFVQID 284
Query: 228 QNDLFPYLLVNVGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELS 287
QNDL+PYLLVN+GSGV MIKV+G+GKFERVSGT++GGGT+WGLG+LLT+CKSFDELL+LS
Sbjct: 285 QNDLYPYLLVNIGSGVGMIKVEGEGKFERVSGTSIGGGTFWGLGKLLTECKSFDELLDLS 464
Query: 288 QKGDNRAIDMLVGDIYGGLDYSKI 311
+G+NRA+DMLVGDIYGG+DYSK+
Sbjct: 465 YRGNNRAVDMLVGDIYGGMDYSKL 536
Score = 117 bits (292), Expect(2) = 1e-93
Identities = 56/74 (75%), Positives = 64/74 (85%)
Frame = +2
Query: 319 ASSFGKTISEKKELQDYRPEDISLSLLRMISYNIGQIAYLNALRFKLKRIFFGGFFIRGH 378
ASSFGK IS+ KE +DY+PEDI+ SLLRMIS NIGQI+YLNALRF +KRIFFGGFFIR H
Sbjct: 533 ASSFGKAISDNKEREDYKPEDIARSLLRMISNNIGQISYLNALRFGMKRIFFGGFFIRRH 712
Query: 379 AYTMDTLSFAVQYW 392
+TMDTLS AV +W
Sbjct: 713 PFTMDTLSVAVNFW 754
>TC226400 similar to UP|PNK1_ARATH (Q8L5Y9) Probable pantothenate kinase 1
(Pantothenic acid kinase 1) , partial (20%)
Length = 742
Score = 331 bits (848), Expect = 1e-90
Identities = 172/184 (93%), Positives = 177/184 (95%), Gaps = 1/184 (0%)
Frame = +2
Query: 710 GDKKKAPHRRALLFVDNSGADIVLGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPD 769
GDKK H+RALLFVDNSGADIVLGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPD
Sbjct: 2 GDKKMPHHKRALLFVDNSGADIVLGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPD 181
Query: 770 IVAEAAKHCDILRRAAEAGGLLVDAMINT-DSSKENSSSVPLMVVENGCGSPCIDLRQVS 828
IVAEAAKHCDILRRAAEAGGLLVDAMINT DSSKEN SSVPLMVVENGCGSPCIDLRQVS
Sbjct: 182 IVAEAAKHCDILRRAAEAGGLLVDAMINTSDSSKENPSSVPLMVVENGCGSPCIDLRQVS 361
Query: 829 SELAAAAKDADLIILEGMGRSLHTNLYAQFKCDALKLAMVKNQRLAEKLIKGNIYDCICK 888
SELAAAAKDADLIILEGMGR+LHTNL A+FK DALKLAMVKNQRLAEKL+KGNIYDCICK
Sbjct: 362 SELAAAAKDADLIILEGMGRALHTNLNARFKRDALKLAMVKNQRLAEKLVKGNIYDCICK 541
Query: 889 YQPA 892
Y+PA
Sbjct: 542 YEPA 553
>CA801632
Length = 409
Score = 249 bits (637), Expect = 3e-66
Identities = 124/136 (91%), Positives = 126/136 (92%)
Frame = +2
Query: 409 GALGAFMSYEKHGLDDLMVHQLVERFPMGAPYTGGKIHGPPLGDLNEKISWMEKFLQKGT 468
GALGAFMSYEKHGL DLMVH LVERFPMGAPYTGGKIHGPPL DLNEKISWMEKFLQK T
Sbjct: 2 GALGAFMSYEKHGLSDLMVHHLVERFPMGAPYTGGKIHGPPLRDLNEKISWMEKFLQKVT 181
Query: 469 EITAPVPMTPVAGTTGLGGFEVPLSKGSALRSDASALNVGVLHLVPTLEVFPLLADPKLY 528
EITAPVPM P GTTGLGGFEVPLSKGS LRSDASALNVGVLHLVPTLEVFPLLAD K+Y
Sbjct: 182 EITAPVPMAP-PGTTGLGGFEVPLSKGSTLRSDASALNVGVLHLVPTLEVFPLLADLKMY 358
Query: 529 EPNTIDLADPSELEYW 544
EPNTIDL+D SELEYW
Sbjct: 359 EPNTIDLSDHSELEYW 406
>TC207426 similar to UP|PNK1_ARATH (Q8L5Y9) Probable pantothenate kinase 1
(Pantothenic acid kinase 1) , partial (17%)
Length = 798
Score = 234 bits (596), Expect = 2e-61
Identities = 117/174 (67%), Positives = 139/174 (79%), Gaps = 1/174 (0%)
Frame = +1
Query: 282 ELLELSQKGDNRAIDMLVGDIYGGLDYSKIGLSASTIASSFGKTISEKKELQDYRPEDIS 341
ELL+ S + NRA+DMLVGD GG+DYSKIGLS++ IASSFGK IS+ KE +DY+PEDI+
Sbjct: 1 ELLDXSYRXXNRAVDMLVGDXXGGMDYSKIGLSSTAIASSFGKAISDNKEREDYKPEDIA 180
Query: 342 LSLLRMISYNIGQIAYLNALRFKLKRIFFGGFFIRGHAYTMDTLSFAVQYWSNGEAQAMF 401
SLLRMIS NIGQI+YLNALRF +KRIFFGGFFIR H +TMDTLS AV +WS GEA+AMF
Sbjct: 181 RSLLRMISNNIGQISYLNALRFGMKRIFFGGFFIRRHPFTMDTLSVAVNFWSKGEAKAMF 360
Query: 402 LRHEGFLGALGAFMSYEKHGLDDLMVHQLVERFPMGAPYTGGKI-HGPPLGDLN 454
LRHEGFLG +GAFMS +KHGL +L+ HQ+V+R + KI HG P GD N
Sbjct: 361 LRHEGFLGGVGAFMSSDKHGLKELLAHQVVQRSLSKLSFAVDKILHGSPDGDFN 522
>BM176984 similar to GP|3249085|gb| T13D8.31 {Arabidopsis thaliana}, partial
(34%)
Length = 425
Score = 231 bits (590), Expect = 8e-61
Identities = 111/141 (78%), Positives = 127/141 (89%)
Frame = +2
Query: 266 TYWGLGRLLTKCKSFDELLELSQKGDNRAIDMLVGDIYGGLDYSKIGLSASTIASSFGKT 325
T+WGLG+LLTKCKSFDELLELS +G+NRA+DMLVGDIYGG+DYSKIGLS++ IASSFGK
Sbjct: 2 TFWGLGKLLTKCKSFDELLELSYRGNNRAVDMLVGDIYGGMDYSKIGLSSTAIASSFGKA 181
Query: 326 ISEKKELQDYRPEDISLSLLRMISYNIGQIAYLNALRFKLKRIFFGGFFIRGHAYTMDTL 385
IS+ K+ DY+PEDI+ SLLRMIS NIGQI+YLNALRF LKRIFFGGFFIR H +TMDTL
Sbjct: 182 ISDNKDCGDYKPEDIARSLLRMISNNIGQISYLNALRFGLKRIFFGGFFIRRHPFTMDTL 361
Query: 386 SFAVQYWSNGEAQAMFLRHEG 406
S AV +WS GEA+AMFLRHEG
Sbjct: 362 SVAVNFWSKGEAKAMFLRHEG 424
>TC227659 similar to GB|AAN28872.1|23506025|AY143933 At4g35360/F23E12_80
{Arabidopsis thaliana;} , complete
Length = 1451
Score = 226 bits (575), Expect = 4e-59
Identities = 140/383 (36%), Positives = 211/383 (54%), Gaps = 12/383 (3%)
Frame = +1
Query: 519 FPLLADP--KLYEPNTIDLADPSELEY--------WLTILSEHLPDLVDKAVASEGGTDD 568
FPLL P Y TI PS+ W+ + +P +A S+ D
Sbjct: 193 FPLLLTPIDSNYRACTIPYRFPSDNPRKPTPTEISWIDLFLNSIPSFKKRA-ESDTSVPD 369
Query: 569 AKRRGDAFARAFSAHLSRLMEEPSAYGKLGLANLL-EMREECLREFQFVDAYRSIKQREN 627
A + + FA+ ++ L L ++P ++G LL +RE LRE F D ++ +K EN
Sbjct: 370 AAAKAEKFAQRYADILEDLKKDPESHGGPPDCILLCRLRELVLRELGFRDIFKKVKDEEN 549
Query: 628 EASLAVLPDLFVELDSMDEE-TRLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMS 686
++++ ++ D++++E RL L+ G+ A NIFD GS +++ K +
Sbjct: 550 AKAISLFENVVHLNDAIEDEGKRLENLVRGIFAGNIFDLGSAQLAEVFSKDGM-SFLASC 726
Query: 687 RNKMRRPWRVDDFDLFKERMLGTGDKKKAPHRRALLFVDNSGADIVLGMLPLARELLRRG 746
+N + RPW +DD D FK + K P ++ ++FVDNSGADI+LG++P ARELLRRG
Sbjct: 727 QNLVPRPWVIDDLDTFKLKW------SKNPWKKVIIFVDNSGADIILGIMPFARELLRRG 888
Query: 747 TEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAEAGGLLVDAMINTDSSKENSS 806
++VVL AN LP++NDVT EL +I+++ + + D S
Sbjct: 889 SQVVLAANDLPSINDVTCSELVEIISK---------------------LKDEDGQLVGVS 1005
Query: 807 SVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLIILEGMGRSLHTNLYAQFKCDALKLA 866
+ L++ +G P IDL +VS ELA A DADL+ILEGMGR + TNLYAQFKCD+LK+
Sbjct: 1006TSNLLIANSGNDLPVIDLTRVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIG 1185
Query: 867 MVKNQRLAEKLIKGNIYDCICKY 889
MVK+ +A+ + G +YDC+ KY
Sbjct: 1186MVKHPEVAQ-FLGGRLYDCVFKY 1251
>TC227488
Length = 1100
Score = 195 bits (496), Expect = 6e-50
Identities = 114/289 (39%), Positives = 170/289 (58%), Gaps = 1/289 (0%)
Frame = +3
Query: 602 LLEMREECLREFQFVDAYRSIKQRENEASLAVLPDLFVELDSMDEE-TRLLTLIEGVLAA 660
L +RE+ LRE F D ++ IK EN ++++ ++ D++++E RL L+ G+ A
Sbjct: 60 LCRLREQVLREQGFRDIFKKIKDVENANAISLFQNVVHLNDAIEDEGKRLENLVRGIFAG 239
Query: 661 NIFDWGSRACVDLYHKGTIIEIYRMSRNKMRRPWRVDDFDLFKERMLGTGDKKKAPHRRA 720
NIFD G+ +++ + + +N + RPW +DD + F+ K ++
Sbjct: 240 NIFDLGATQLAEVFSRDGV-SFSTTCQNLVPRPWIIDDLETFRIAW------SKKSWKKV 398
Query: 721 LLFVDNSGADIVLGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDI 780
++FVDNSGAD++LG+LP ARELLRRG++V+L AN LP++NDVT +L +I+ +
Sbjct: 399 IIFVDNSGADVILGILPFARELLRRGSQVILAANDLPSINDVTYSDLIEIIPKLKD---- 566
Query: 781 LRRAAEAGGLLVDAMINTDSSKENSSSVPLMVVENGCGSPCIDLRQVSSELAAAAKDADL 840
E G L T S N L++ +G P IDL +VS ELA A D DL
Sbjct: 567 -----EEGRL-------TGVSTSN-----LLIANSGNDLPVIDLTRVSQELAYLANDVDL 695
Query: 841 IILEGMGRSLHTNLYAQFKCDALKLAMVKNQRLAEKLIKGNIYDCICKY 889
+ILEGMGR + TNLYAQFKCD+LK+ MVK+ +AE + +YDC+ KY
Sbjct: 696 VILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAE-FLGSRLYDCVIKY 839
>TC217571 similar to UP|PNK1_ARATH (Q8L5Y9) Probable pantothenate kinase 1
(Pantothenic acid kinase 1) , partial (10%)
Length = 478
Score = 175 bits (444), Expect = 7e-44
Identities = 86/93 (92%), Positives = 91/93 (97%)
Frame = +1
Query: 800 SSKENSSSVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLIILEGMGRSLHTNLYAQFK 859
S +ENSSSVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLIILEGMGR+LHTNL A+F+
Sbjct: 61 SPRENSSSVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLIILEGMGRALHTNLNARFQ 240
Query: 860 CDALKLAMVKNQRLAEKLIKGNIYDCICKYQPA 892
CDALKLAMVKNQRLAEKLIKGNIYDCICKY+PA
Sbjct: 241 CDALKLAMVKNQRLAEKLIKGNIYDCICKYEPA 339
>TC227487 similar to GB|AAN28872.1|23506025|AY143933 At4g35360/F23E12_80
{Arabidopsis thaliana;} , partial (53%)
Length = 773
Score = 166 bits (420), Expect = 4e-41
Identities = 93/203 (45%), Positives = 127/203 (61%)
Frame = +1
Query: 687 RNKMRRPWRVDDFDLFKERMLGTGDKKKAPHRRALLFVDNSGADIVLGMLPLARELLRRG 746
+N + RPW +DD + FK + K ++ ++FVDNSGADI+LG+LP ARELLR G
Sbjct: 52 QNLVPRPWVIDDLETFKMKX------SKKSWKKVVIFVDNSGADIILGILPFARELLRHG 213
Query: 747 TEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAEAGGLLVDAMINTDSSKENSS 806
++V+L AN LP+LNDVT EL +I+++ E G L+ S
Sbjct: 214 SQVILAANDLPSLNDVTYAELLEIISKLKD---------EEGCLM------------GVS 330
Query: 807 SVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLIILEGMGRSLHTNLYAQFKCDALKLA 866
+ L++ +G P IDL +VS ELA A DADL+ILEGMGR + TNLYAQFKCD+LK+A
Sbjct: 331 TSNLIIANSGNDLPVIDLTRVSQELAYLANDADLVILEGMGRGIETNLYAQFKCDSLKIA 510
Query: 867 MVKNQRLAEKLIKGNIYDCICKY 889
MVK+ +AE + +YDC+ KY
Sbjct: 511 MVKHPEVAE-FLGSRLYDCVIKY 576
>TC211950 similar to UP|PNK1_ARATH (Q8L5Y9) Probable pantothenate kinase 1
(Pantothenic acid kinase 1) , partial (10%)
Length = 779
Score = 152 bits (383), Expect = 8e-37
Identities = 71/87 (81%), Positives = 78/87 (89%)
Frame = +3
Query: 646 EETRLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRNKMRRPWRVDDFDLFKER 705
+ET LLTLIEGVLAANIFDWGS ACVDLYHKGTI+EIYR+S NKM+RPWRVDDF FK+R
Sbjct: 453 QETTLLTLIEGVLAANIFDWGSHACVDLYHKGTILEIYRISHNKMQRPWRVDDFHAFKQR 632
Query: 706 MLGTGDKKKAPHRRALLFVDNSGADIV 732
MLGTGDKK HRRALLFVDN+GAD +
Sbjct: 633 MLGTGDKKPPLHRRALLFVDNAGADTI 713
>TC207428 similar to UP|PNK1_ARATH (Q8L5Y9) Probable pantothenate kinase 1
(Pantothenic acid kinase 1) , partial (7%)
Length = 863
Score = 145 bits (367), Expect = 6e-35
Identities = 76/147 (51%), Positives = 103/147 (69%)
Frame = +2
Query: 57 EDKYPTILLPNQSDDLSHLALDIGGSLIKLVYFSRHEGQSDDDKRKKTLKERLGLSNGNR 116
E + IL PNQ + HLALDIGGSL KLVYF++ + D + + ++ SNG++
Sbjct: 428 EGQTQPILDPNQPSHVYHLALDIGGSLAKLVYFTKDDDHLVDGEEGISHRKAFEKSNGSK 607
Query: 117 RSFPILGGRLHFVKFETGKINECLDFIHSKQLHRGLESRYSDTEADRNAIIKATGGGAYK 176
+ +P+L GRL+F KFET KIN+C++FI S +LH G S+ + ++ IKATGGGAYK
Sbjct: 608 Q-YPVLNGRLNFKKFETSKINDCIEFIKSMKLHIG-GSQPQENPGSQSIAIKATGGGAYK 781
Query: 177 FTDLFKEKLGVSLDKEDEMNCLVAGAN 203
+ DLFKE+LG+ DKEDEM+CLVAGAN
Sbjct: 782 YADLFKERLGIIFDKEDEMDCLVAGAN 862
>AI960902
Length = 420
Score = 112 bits (280), Expect = 7e-25
Identities = 60/131 (45%), Positives = 88/131 (66%)
Frame = +2
Query: 57 EDKYPTILLPNQSDDLSHLALDIGGSLIKLVYFSRHEGQSDDDKRKKTLKERLGLSNGNR 116
E + IL PNQ + HLALDIGGSL KLVYF++ + D + + ++ L S+ ++
Sbjct: 29 EGQTQPILDPNQPSHVYHLALDIGGSLAKLVYFTKDDDHLVDGEEGISHRKALEKSDSSK 208
Query: 117 RSFPILGGRLHFVKFETGKINECLDFIHSKQLHRGLESRYSDTEADRNAIIKATGGGAYK 176
+ +P+L G+L+F KFET +IN+C++FI S +LH G S+ + + IKATGGGAYK
Sbjct: 209 Q-YPVLNGKLNFKKFETRRINDCIEFIKSMKLHIG-GSQPQENPGSQPIAIKATGGGAYK 382
Query: 177 FTDLFKEKLGV 187
+ DLFKE+LG+
Sbjct: 383 YPDLFKERLGI 415
>TC227486
Length = 715
Score = 104 bits (260), Expect = 1e-22
Identities = 72/238 (30%), Positives = 124/238 (51%), Gaps = 10/238 (4%)
Frame = +2
Query: 514 PTLEVFPLLADPKLYEPNTI-------DLADPSELEY-WLTILSEHLPDLVDKAVASEGG 565
P L FPLL + Y +TI D + P+ +E WL + +P K S+
Sbjct: 29 PQLVPFPLLMNGN-YTASTIPWRLPSDDPSIPTPIELSWLNLFLNTIPTF-KKHAESDTS 202
Query: 566 TDDAKRRGDAFARAFSAHLSRLMEEPSAYG-KLGLANLLEMREECLREFQFVDAYRSIKQ 624
DA + + FA+ F+ + ++P++ G L + +RE+ L+E F D ++ IK
Sbjct: 203 VPDAVNKAEEFAQRFARIIEDFKKDPASQGVPLDVLLPCRLREQVLKELGFRDIFKKIKD 382
Query: 625 RENEASLAVLPDLFVELDSMDEE-TRLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIY 683
EN ++++ ++ D++++E RL L+ G+ A NIFD G+ +++ + +
Sbjct: 383 VENANAISLFENVVRLNDAIEDEGKRLENLVRGIFAGNIFDLGASQLAEVFSRDGM-SFS 559
Query: 684 RMSRNKMRRPWRVDDFDLFKERMLGTGDKKKAPHRRALLFVDNSGADIVLGMLPLARE 741
+N + RPW +DD + FK + K ++ ++FVDNSGADI+LG+LP ARE
Sbjct: 560 VTCQNLVPRPWVIDDLETFKMKW------SKKTWKKVIIFVDNSGADIILGILPFARE 715
>TC226401 similar to UP|Q7X998 (Q7X998) MRNA-binding protein (Fragment),
partial (24%)
Length = 686
Score = 97.4 bits (241), Expect = 2e-20
Identities = 46/52 (88%), Positives = 50/52 (95%)
Frame = -3
Query: 841 IILEGMGRSLHTNLYAQFKCDALKLAMVKNQRLAEKLIKGNIYDCICKYQPA 892
IILEGMGR+LHTNL A+FK DALKLAMVKNQRLAEKL+KGNIYDCICKY+PA
Sbjct: 351 IILEGMGRALHTNLNARFKRDALKLAMVKNQRLAEKLVKGNIYDCICKYEPA 196
>BE801430
Length = 325
Score = 67.8 bits (164), Expect = 2e-11
Identities = 42/121 (34%), Positives = 62/121 (50%)
Frame = +2
Query: 750 VLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAEAGGLLVDAMINTDSSKENSSSVP 809
+L AN LP++NDVT +L +I+ + + + +
Sbjct: 2 ILAANDLPSINDVTHSDLVEIIPKVK---------------------DEE*RLTGVRT*D 118
Query: 810 LMVVENGCGSPCIDLRQVSSELAAAAKDADLIILEGMGRSLHTNLYAQFKCDALKLAMVK 869
L++ +G P IDL +VS ELA A D DL ILE MG + TNL AQ KCD++K+AM +
Sbjct: 119 LLIANSGND*PVIDLTRVSQELAYLANDVDLAILERMGHGIETNLDAQDKCDSIKIAMAE 298
Query: 870 N 870
+
Sbjct: 299 H 301
>TC212740 weakly similar to UP|Q8S9I4 (Q8S9I4) AT4g02720/T10P11_1, partial
(14%)
Length = 461
Score = 32.7 bits (73), Expect = 0.72
Identities = 23/80 (28%), Positives = 34/80 (41%)
Frame = +2
Query: 462 KFLQKGTEITAPVPMTPVAGTTGLGGFEVPLSKGSALRSDASALNVGVLHLVPTLEVFPL 521
KFL T+IT P+TP++ TT + + +A RS A+A+
Sbjct: 62 KFLTNATDITTAAPLTPMSPTTIAAAAALATTHMTATRSAAAAVR--------------- 196
Query: 522 LADPKLYEPNTIDLADPSEL 541
Y P+T L P+EL
Sbjct: 197 ------YRPSTETLGTPTEL 238
>TC219594 similar to UP|Q8W4B1 (Q8W4B1) RNA-binding protein-like (At5g53060),
partial (13%)
Length = 852
Score = 32.3 bits (72), Expect = 0.94
Identities = 34/93 (36%), Positives = 40/93 (42%), Gaps = 4/93 (4%)
Frame = +3
Query: 483 TGLGGFEVPLSKGSALRSDA-SALNVGVLHLVP--TLEV-FPLLADPKLYEPNTIDLADP 538
TG E K S R D S LN + LV TLEV P A PKL + LA
Sbjct: 261 TGGSSTETGKQKESDRRDDLLSGLNRIAVPLVTRSTLEVVLPEYAVPKLVAKSKSKLAQI 440
Query: 539 SELEYWLTILSEHLPDLVDKAVASEGGTDDAKR 571
SEL L E PD+ K + G + A+R
Sbjct: 441 SELSGANVTLVEDRPDVTQKIIQISGTPEQAER 539
>TC214656 similar to UP|Q8LCB0 (Q8LCB0) Sterol-C-methyltransferase, partial
(79%)
Length = 1209
Score = 29.3 bits (64), Expect = 8.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 15 LGIDESEGHNNTNNMAP-TGNPIHRSSSRPQLDVSKAEI 52
LG D G N+ +NM P G+P H S+ P L ++I
Sbjct: 836 LGRDSQSGENSDHNMVPPVGDPTHLQSAPPWLSRRLSQI 720
>AW704071 similar to GP|11558192|emb transcription factor (E2F) {Chenopodium
rubrum}, partial (8%)
Length = 381
Score = 29.3 bits (64), Expect = 8.0
Identities = 13/32 (40%), Positives = 19/32 (58%)
Frame = +2
Query: 477 TPVAGTTGLGGFEVPLSKGSALRSDASALNVG 508
TPV+G TG GG L+KG+ + + N+G
Sbjct: 278 TPVSGKTGKGGKSSRLTKGNRVGTQTPGSNIG 373
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.137 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,918,991
Number of Sequences: 63676
Number of extensions: 404613
Number of successful extensions: 1810
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1796
length of query: 892
length of database: 12,639,632
effective HSP length: 106
effective length of query: 786
effective length of database: 5,889,976
effective search space: 4629521136
effective search space used: 4629521136
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Medicago: description of AC131239.17