BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC130803.17 + phase: 0
(532 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC222199 110 2e-24
TC216808 61 7e-21
BG508280 61 1e-09
BI317622 53 4e-07
BE611176 44 2e-04
BI315644 40 0.003
TC211631 similar to UP|Q93ZQ3 (Q93ZQ3) AT3g63200/F16M2_50, parti... 33 0.41
TC222651 homologue to UP|Q9B8W1 (Q9B8W1) NADH dehydrogenase subu... 31 1.6
TC225297 similar to UP|Q6VEJ5 (Q6VEJ5) Alanine aminotransferase,... 30 3.5
TC234562 similar to UP|HT22_ARATH (P46604) Homeobox-leucine zipp... 29 4.6
TC219679 similar to UP|Q9FVD3 (Q9FVD3) Hexokinase, partial (64%) 29 4.6
BG359786 28 7.8
TC223637 28 7.8
>TC222199
Length = 691
Score = 110 bits (275), Expect = 2e-24
Identities = 75/230 (32%), Positives = 114/230 (48%), Gaps = 24/230 (10%)
Frame = +2
Query: 124 DFQLVPTLEAYSNLVGLPIAEKTPFTG----PGTSLTPLVIAKDLYLKTSDVSNHLITKS 179
DFQLVPT+E + ++G P+ E+ P+ P S P ++ KD V T++
Sbjct: 5 DFQLVPTIEEFEEILGCPLGERKPYLSSGCLPSLSRIPTMV-KDSARGLDRVKQ---TRN 172
Query: 180 HIRGFASKYLLEQANLSTTRQDTLEA--ILALLIYGLILFPNLDNFVDMNAIEVF----H 233
I G KYL ++A + D + +LALLI+G++LFPN+D VD+ AI+ F H
Sbjct: 173 GIAGLPRKYLEDKARGIANQGDWVPFMDVLALLIFGVVLFPNVDGLVDLAAIDAFLAYHH 352
Query: 234 SK-NPVPTLLADTYHAIHDRTLKGRGYILCCISLLYRWFISHL---------PSSFH--- 280
SK +PV +LAD + + R K I+CC+ L W +SHL P H
Sbjct: 353 SKESPVVAVLADLFDTFNRRYEKSSARIICCLPALCVWLVSHLFQQDTRRPCPLLSHRSC 532
Query: 281 DNSENWSYSQRIMALTPNEVVWITPAAQAKE-IIMGCGDFLNVPLLGTRG 329
+ Q + + + W + KE ++ CG + N+PL+GTRG
Sbjct: 533 TEKRRIDWDQLLAGIGGRTISWFPRWKEGKEGVLFSCGRYPNIPLVGTRG 682
>TC216808
Length = 1144
Score = 60.8 bits (146), Expect(2) = 7e-21
Identities = 33/108 (30%), Positives = 56/108 (51%)
Frame = +2
Query: 86 FRLRYGGLLTLLRTDVDEKLVHTLVQFYDPSFRCFTFPDFQLVPTLEAYSNLVGLPIAEK 145
FR YG + L R +V + + +L Q+YD RCFTF DFQLVPT++ + G + +
Sbjct: 236 FRKAYGKIWDLARVEVSMEPIASLSQYYDQPLRCFTFEDFQLVPTVKELEEIRGCQLGGR 415
Query: 146 TPFTGPGTSLTPLVIAKDLYLKTSDVSNHLITKSHIRGFASKYLLEQA 193
P+ G + +AK + + +++ ++ + G K L E+A
Sbjct: 416 KPYLFSGFYPSTTRVAKVVKISAQELNRVKQNRNGVVGVPRKCLEERA 559
Score = 58.2 bits (139), Expect(2) = 7e-21
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Frame = +3
Query: 206 ILALLIYGLILFPNLDNFVDMNAIEVF----HSK-NPVPTLLADTYHAIHDRTLKGRGYI 260
ILALLI+G++LFPN++ VD+ AI+ F H K +PV +LA Y K I
Sbjct: 603 ILALLIFGVVLFPNMEGLVDLAAIDAFLAFHHGKESPVVAILA-MYDTFDRGCEKSSARI 779
Query: 261 LCCISLLYRWFISHL 275
+CC LY W +SHL
Sbjct: 780 VCCALALYVWLVSHL 824
>BG508280
Length = 418
Score = 61.2 bits (147), Expect = 1e-09
Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Frame = +1
Query: 312 IIMGCGDFLNVPLLGTRGGINYNPELAMRQFGFPMKSKPINLATSPEF---FFYTNAPTG 368
+++ CG F NVPL+GTRG I+YNP LA++Q G+PM P+ +P F TN T
Sbjct: 70 VLISCGGFPNVPLMGTRGCISYNPVLAIKQLGYPM*GVPLEDELAPVISRGFNKTNVETL 249
Query: 369 QRKAFMDAWSKVRRKSVKHLGVRSGVAHEAYTQWVIDRAEEIGMPY-PAMRYVSSSTPSI 427
Q+ AW +++K + G +G Y +W+ +A G+ + P++R
Sbjct: 250 QK--VRKAWEVLQKKDKELRGSNNGPI-GGYRKWL--KAHVQGLDWLPSLRTAKREEDEA 414
Query: 428 P 428
P
Sbjct: 415 P 417
>BI317622
Length = 370
Score = 52.8 bits (125), Expect = 4e-07
Identities = 38/125 (30%), Positives = 53/125 (42%), Gaps = 20/125 (16%)
Frame = -2
Query: 221 DNFVDMNAIEVF-----HSKNPVPTLLADTYHAIHDRTLKGRGYILCCISLLYRWFISHL 275
D VD+ AI F + + P+ +LAD Y + R K I+CC LY W +SHL
Sbjct: 369 DGLVDLAAIGAFLAYHDYKEIPIVAMLADLYDTFNRRCEKSSTRIVCCTPALYVWLVSHL 190
Query: 276 ---------PSSFH-----DNSENWSYSQRIMALTPNEVVWITPAAQAK-EIIMGCGDFL 320
P H ENW Q + V W + + +++ CG FL
Sbjct: 189 FRQEVRHACPLESHCSCTEKGGENW--GQLLANKEGASVNWFPRWKEGRTRVLISCGVFL 16
Query: 321 NVPLL 325
NVPL+
Sbjct: 15 NVPLM 1
>BE611176
Length = 424
Score = 43.5 bits (101), Expect = 2e-04
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = -2
Query: 69 DLVSLRELA--LKVKSQTGFRLRYGGLLTLLRTDVDEKLVHTLVQFYDPSFRCFTFPDFQ 126
D+ S++EL + FR Y +L L ++ + + +L Q+YD RCFTF DFQ
Sbjct: 327 DITSIKELGRLMGPLQMQAFRKAYEKILDLTIAEISTEAIASLTQYYD*PLRCFTFGDFQ 148
Query: 127 LVPTLEAYSNLVGLPIAEKTPFTGPG 152
L L+ + + E PG
Sbjct: 147 LDRPLKNLRRF*DVLLGEGNRIFSPG 70
>BI315644
Length = 421
Score = 40.0 bits (92), Expect = 0.003
Identities = 17/31 (54%), Positives = 23/31 (73%)
Frame = +3
Query: 327 TRGGINYNPELAMRQFGFPMKSKPINLATSP 357
TRG INYNP LA+RQ G+PM+ P + + +P
Sbjct: 276 TRGCINYNPVLAIRQLGYPMRGVPSDESITP 368
>TC211631 similar to UP|Q93ZQ3 (Q93ZQ3) AT3g63200/F16M2_50, partial (42%)
Length = 533
Score = 32.7 bits (73), Expect = 0.41
Identities = 25/87 (28%), Positives = 34/87 (38%), Gaps = 9/87 (10%)
Frame = -2
Query: 348 SKPINLATSPEFFFYTNAPTG---------QRKAFMDAWSKVRRKSVKHLGVRSGVAHEA 398
S P++L TS F + P Q+KAF + WS+V + GV H
Sbjct: 442 SSPLSLRTSSFFMASLSKPKAWILT*SVRFQQKAFPNIWSRVSETPSSTMSTTDGVEHVR 263
Query: 399 YTQWVIDRAEEIGMPYPAMRYVSSSTP 425
+ A P+P R SSTP
Sbjct: 262 -----VSHAFAFEDPFPKERTSRSSTP 197
>TC222651 homologue to UP|Q9B8W1 (Q9B8W1) NADH dehydrogenase subunit 6,
partial (8%)
Length = 1006
Score = 30.8 bits (68), Expect = 1.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 268 YRWFISHLPSSFHDNSENWSYSQRIM 293
Y W I +L FH N+EN +YS +I+
Sbjct: 628 YLWLIKYL*KDFHINNENQTYSYKIL 551
>TC225297 similar to UP|Q6VEJ5 (Q6VEJ5) Alanine aminotransferase, partial (98%)
Length = 1833
Score = 29.6 bits (65), Expect = 3.5
Identities = 22/63 (34%), Positives = 31/63 (48%), Gaps = 4/63 (6%)
Frame = -2
Query: 147 PFTGPGTSLTPLVIAKDLYLKTSDV----SNHLITKSHIRGFASKYLLEQANLSTTRQDT 202
P PGT+ TP+ ++K L K S V S LI S R + ++Y+ A L T +
Sbjct: 1475 PKPEPGTTTTPVALSKRLQ*KLSGVAFAASAALIAFSDRRIWGNRYIAPSALLHVTPSNL 1296
Query: 203 LEA 205
L A
Sbjct: 1295 LNA 1287
>TC234562 similar to UP|HT22_ARATH (P46604) Homeobox-leucine zipper protein
HAT22 (HD-ZIP protein 22), partial (33%)
Length = 585
Score = 29.3 bits (64), Expect = 4.6
Identities = 21/67 (31%), Positives = 31/67 (45%), Gaps = 6/67 (8%)
Frame = +3
Query: 431 LLPATQDMYQEHLAMESHEKQVW------KARYNQAENLIMTLDGRDEQKTHENLMLKKE 484
L PA + E L ++ + +VW + + Q E L E+ T ENL LKKE
Sbjct: 366 LNPAQKQALAEQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKE 545
Query: 485 LAKARKE 491
L + R +
Sbjct: 546 LQELRAQ 566
>TC219679 similar to UP|Q9FVD3 (Q9FVD3) Hexokinase, partial (64%)
Length = 1110
Score = 29.3 bits (64), Expect = 4.6
Identities = 20/61 (32%), Positives = 26/61 (41%), Gaps = 15/61 (24%)
Frame = +2
Query: 258 GYILCCISLLYRWFISH---LPSSFHDNSENW------------SYSQRIMALTPNEVVW 302
GY CC S Y W IS L S H ++W YS+ MAL N+ +W
Sbjct: 806 GYARCCSS**YHWNISWRQILQSGCHCCCDSWYWDKCSICRTSTCYSKMGMALYQNQEIW 985
Query: 303 I 303
+
Sbjct: 986 L 988
>BG359786
Length = 408
Score = 28.5 bits (62), Expect = 7.8
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Frame = +2
Query: 406 RAEEIGMPYPAMRYVSSSTPSIPLPLLPATQDMYQEHLAMESHE-KQVWKARYNQAENLI 464
++ +G+ Y A + + S S+ PA ++M + HE ++ ++R + +
Sbjct: 23 KSGNLGIDYLA-KILDFSLVSLQKLSAPANEEMMKAAHKKLFHELSEICQSRDESNNSCV 199
Query: 465 MTLDGRDEQKTHENLMLKKELAKARKELEEKDELLLRDSKRAKGRRDFFARYCGSDSESD 524
+ L + + +LKKE++KAR L E L++ S R+ FA GS S+++
Sbjct: 200 VALVKGLQFVFGQIQILKKEISKARIRLMES---LVKGSAGLDYLRNAFANKYGSPSDAN 370
Query: 525 -DLPTT 529
LP+T
Sbjct: 371 TSLPST 388
>TC223637
Length = 794
Score = 28.5 bits (62), Expect = 7.8
Identities = 13/32 (40%), Positives = 17/32 (52%)
Frame = +1
Query: 260 ILCCISLLYRWFISHLPSSFHDNSENWSYSQR 291
ILC I+L + +I+ DNS NW Y R
Sbjct: 184 ILCFINLYLKKYINIFYDLIEDNSRNWVYGLR 279
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,545,706
Number of Sequences: 63676
Number of extensions: 296625
Number of successful extensions: 1655
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1649
length of query: 532
length of database: 12,639,632
effective HSP length: 102
effective length of query: 430
effective length of database: 6,144,680
effective search space: 2642212400
effective search space used: 2642212400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Medicago: description of AC130803.17