TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126784.7 - phase: 0 
         (339 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC219603                                                              320  8e-88
BM567735                                                              191  3e-49
TC230191 weakly similar to GB|AAF44683.1|7271905|AF239765 nuclea...    31  0.70
TC215199 similar to UP|Q84PC7 (Q84PC7) PP2A regulatory subunit-l...    31  0.70
TC203742 similar to UP|Q8H6S5 (Q8H6S5) CTV.2, partial (15%)            31  0.92
TC228880 similar to UP|Q6NPN9 (Q6NPN9) At1g76260, partial (43%)        30  1.2
TC228879 similar to UP|Q6NPN9 (Q6NPN9) At1g76260, partial (30%)        30  1.2
TC224506 weakly similar to UP|GCP2_ARATH (Q9M1S8) Probable gluta...    30  1.6
TC211251 weakly similar to UP|Q6TAF9 (Q6TAF9) Blight resistance ...    30  1.6
BQ785824                                                               29  2.7
TC211111 homologue to UP|EBN2_EBV (P12978) EBNA-2 nuclear protei...    29  2.7
BG238184                                                               29  2.7
TC215200 similar to UP|Q9XHD0 (Q9XHD0) PP2A regulatory subunit, ...    28  4.5
TC207408 homologue to UP|Q6T2Z2 (Q6T2Z2) Cyclin-dependent kinase...    28  5.9
TC221178 similar to UP|PERX_NICSY (Q02200) Lignin forming anioni...    28  7.7
TC205618 similar to GB|AAL60196.1|18139887|AF441079 O-linked N-a...    28  7.7
TC219821 weakly similar to UP|PJA1_MOUSE (O55176) Ubiquitin prot...    28  7.7

>TC219603 
          Length = 1210

 Score =  320 bits (819), Expect = 8e-88
 Identities = 154/171 (90%), Positives = 157/171 (91%)
 Frame = +3

Query: 169 TSVKWASPVEFATGGYGFGLHWWDQRKPGGPVSQFKGNWDKNLNSGIVHSIDIHPSRKHT 228
           T+V WASP+EFATGGYGFGLHWWDQRKPGGPVSQFKGNWDK L SGIVHSIDIHPSRKHT
Sbjct: 3   TAVSWASPMEFATGGYGFGLHWWDQRKPGGPVSQFKGNWDKKLTSGIVHSIDIHPSRKHT 182

Query: 229 CLAAGSLGTVLAWDLRMQQQPIILSGTGAGDGAGNTAVQSISESEVWEVQYDRCIKSNTS 288
           CLA GSLGTV AWDLR QQQPIILSG GAG G GNTAVQSISESEVWEVQYDRCIK NTS
Sbjct: 183 CLAGGSLGTVFAWDLRWQQQPIILSGAGAGAG-GNTAVQSISESEVWEVQYDRCIKPNTS 359

Query: 289 STRILPAMICSEDGILGVIEQGEEPIELLAEPCAINSFDIDRHNPLVSGCS 339
           STRILP+MICSEDGILGVIEQGEEPIELLAEPCAINSFDIDRHNP    CS
Sbjct: 360 STRILPSMICSEDGILGVIEQGEEPIELLAEPCAINSFDIDRHNPSDVICS 512


>BM567735 
          Length = 428

 Score =  191 bits (486), Expect = 3e-49
 Identities = 96/143 (67%), Positives = 114/143 (79%)
 Frame = +1

Query: 1   MAVTANSEIHRFPQYKYIDAVRWLPVLSAFNRFAVLATSDFDSNLSSIEIHSFKPNPLSF 60
           MA TA   I RFPQ+KY+DAVRWLP+ SAF+RFAVLA  DFD + SSIEIHS  PNPLS 
Sbjct: 7   MAATA---IQRFPQHKYVDAVRWLPLQSAFDRFAVLALFDFDFDASSIEIHSLNPNPLSL 177

Query: 61  EFQSSWTSPSPISSIKSSQFLQKSIIASSTSSGSLHFLFADSTDARLVSEVSVPENELHL 120
           E  SSW+SPS +SS+K+S FLQK +I +STSSGSLHFLF+DS+ A L SEVS+PE  LH 
Sbjct: 178 EPHSSWSSPSRVSSLKASHFLQKPLIVASTSSGSLHFLFSDSSVATLESEVSIPEGALHS 357

Query: 121 EGKCCIDLMDGGVECVTVGDDGR 143
               C+DL+DGGVECVTVG+DG+
Sbjct: 358 VPASCVDLLDGGVECVTVGEDGK 426


>TC230191 weakly similar to GB|AAF44683.1|7271905|AF239765 nuclear protein
           Ytm1p {Mus musculus;} , partial (6%)
          Length = 1106

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 22/67 (32%), Positives = 29/67 (42%), Gaps = 2/67 (2%)
 Frame = +2

Query: 180 ATGGYGFGLHWWDQRKPG--GPVSQFKGNWDKNLNSGIVHSIDIHPSRKHTCLAAGSLGT 237
           A GG    +  WD RKPG   PV QF        ++  + +   H       L+A   G 
Sbjct: 308 AAGGSDPVIRIWDPRKPGTSAPVFQFSS------HTSWISACKWHDQSWFHLLSASYDGK 469

Query: 238 VLAWDLR 244
           V+ WDLR
Sbjct: 470 VMLWDLR 490


>TC215199 similar to UP|Q84PC7 (Q84PC7) PP2A regulatory subunit-like protein,
           partial (16%)
          Length = 782

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 21/53 (39%), Positives = 27/53 (50%)
 Frame = -1

Query: 68  SPSPISSIKSSQFLQKSIIASSTSSGSLHFLFADSTDARLVSEVSVPENELHL 120
           +P  +SS +SSQ L  S  ASS+SS S  F F       L S +S+     HL
Sbjct: 257 APRGLSSFQSSQALAFSCAASSSSSSSPGFDFLSLCQDELASSMSLTFLSCHL 99


>TC203742 similar to UP|Q8H6S5 (Q8H6S5) CTV.2, partial (15%)
          Length = 903

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
 Frame = +3

Query: 39  SDFDSNLSSIEIHSFKPNPLSFEFQSSWTSPSPISSIKSSQFLQKSIIASS------TSS 92
           + F   LS   +H F+P+    E +  W  P PI +  +S     S+ ASS      + S
Sbjct: 393 NQFAVGLSDGGVHVFEPH----ESEGKWGVPPPIENGSTSNMAATSVGASSDEAQR*SMS 560

Query: 93  GSLHFLFADSTDARLVSEVSVPENELHLEGKCCIDLMDGG 132
               FL          + V + +N + L G C +   + G
Sbjct: 561 AKDKFLLHTWLAGHFKN*VCI*DNAIVLSGLCAVTYQNNG 680


>TC228880 similar to UP|Q6NPN9 (Q6NPN9) At1g76260, partial (43%)
          Length = 761

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 216 VHSIDIHPSRKHTCLAAGSLGTVLAWDLRMQQQPI 250
           V S+D HP ++H  + A     +  WDLR  + PI
Sbjct: 99  VCSVDYHPQKQHILVTAEHESGIHIWDLRKPKVPI 203



 Score = 30.4 bits (67), Expect = 1.2
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +3

Query: 181 TGGYGFGLHWWDQRKPGGPVSQFKGNWDKNLNSGIVHSIDIHPSRKHTCLAAGSLGTVLA 240
           T  +  G+H WD RKP  P+ +  G      ++    ++  +P      L+AG+  TV  
Sbjct: 144 TAEHESGIHIWDLRKPKVPIQELPG------HTHWTWTVKCNPEYDGMILSAGTDSTVNL 305

Query: 241 W 241
           W
Sbjct: 306 W 308


>TC228879 similar to UP|Q6NPN9 (Q6NPN9) At1g76260, partial (30%)
          Length = 742

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +3

Query: 181 TGGYGFGLHWWDQRKPGGPVSQFKGNWDKNLNSGIVHSIDIHPSRKHTCLAAGSLGTVLA 240
           T  +  G+H WD RKP  P+ +  G      ++    ++  +P      L+AG+  TV  
Sbjct: 87  TAEHESGIHIWDLRKPKVPIQELPG------HTHWTWTVKCNPEYDGMILSAGTDSTVNL 248

Query: 241 W 241
           W
Sbjct: 249 W 251



 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 216 VHSIDIHPSRKHTCLAAGSLGTVLAWDLRMQQQPI 250
           V S+D HP ++   + A     +  WDLR  + PI
Sbjct: 42  VXSVDFHPQKQXMLVTAEHESGIHIWDLRKPKVPI 146


>TC224506 weakly similar to UP|GCP2_ARATH (Q9M1S8) Probable glutamate
           carboxypeptidase II  , partial (15%)
          Length = 515

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 17/46 (36%), Positives = 24/46 (51%)
 Frame = -2

Query: 67  TSPSPISSIKSSQFLQKSIIASSTSSGSLHFLFADSTDARLVSEVS 112
           TS  P+S+  S  F  +  I+   S  S HF F DS+ A L +E +
Sbjct: 313 TSKKPLSASISLSFNARIFISIERSEASCHFNFFDSSLASLAAEAN 176


>TC211251 weakly similar to UP|Q6TAF9 (Q6TAF9) Blight resistance protein SH10
           (Fragment), partial (8%)
          Length = 1062

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 20/65 (30%), Positives = 32/65 (48%), Gaps = 3/65 (4%)
 Frame = -3

Query: 56  NPLSFEFQSSWTSPSPISSIKSSQFLQKSIIASST---SSGSLHFLFADSTDARLVSEVS 112
           N  SF F+  + SP P+++   S F+   +  +     SSG    L    TD+ L +  S
Sbjct: 631 NVTSFNFKLKF*SPWPLNNSNLSHFITCKVSNAGKCLLSSGKDFSLLQHQTDSSLRTGNS 452

Query: 113 VPENE 117
           +PEN+
Sbjct: 451 IPENK 437


>BQ785824 
          Length = 426

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = +1

Query: 27  LSAFNRFAVLATSDFDSNLSSIEIHSFKPNPLSFEFQSSWTSPSPISSIKSSQFLQKSII 86
           +S+F     +A  D   +L+    HS     L F F  SW  P P  S + S  L     
Sbjct: 64  VSSFLLAVAVAVVD*PHSLTHSLTHSLATTTLDFNFFHSWLRPPPPPSARGSSLLACQSR 243

Query: 87  ASSTS 91
           A+ T+
Sbjct: 244 ATPTA 258


>TC211111 homologue to UP|EBN2_EBV (P12978) EBNA-2 nuclear protein, partial
           (5%)
          Length = 769

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +2

Query: 25  PVLSAFNRFAVLATSDFDSNLSSIEI-HSFKPNPLSFEFQSSWTSPSPISS 74
           P+LS+F  +++ + S +  N +S  I H+  PN L  ++ S+ T P P SS
Sbjct: 305 PLLSSFLTYSLASFSPYSLNPTSPFIFHNTSPNLLCPQYASASTFPPPSSS 457


>BG238184 
          Length = 465

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 14/39 (35%), Positives = 21/39 (52%)
 Frame = +2

Query: 58 LSFEFQSSWTSPSPISSIKSSQFLQKSIIASSTSSGSLH 96
          LSF+ Q+ W    P  S++S        +++STS  SLH
Sbjct: 35 LSFQSQTPWRFGDPSRSLRSFSRSSSMALSASTSPASLH 151


>TC215200 similar to UP|Q9XHD0 (Q9XHD0) PP2A regulatory subunit, partial (93%)
          Length = 1530

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 26/71 (36%), Positives = 33/71 (45%), Gaps = 2/71 (2%)
 Frame = -1

Query: 52   SFKPNPLSFEFQSSWTSPSPISSIKSSQFLQKSIIASSTSSGSL--HFLFADSTDARLVS 109
            S  P  +SF F +    P  +SS +SSQ L  S  ASS+SS S    F F       L S
Sbjct: 1347 SVYPQGVSFLFPA----PRGLSSFQSSQALAFSCAASSSSSSSSSPSFDFLSLCQDELTS 1180

Query: 110  EVSVPENELHL 120
             +S+     HL
Sbjct: 1179 SMSLTFLSCHL 1147


>TC207408 homologue to UP|Q6T2Z2 (Q6T2Z2) Cyclin-dependent kinase inhibitor
           1;2, partial (97%)
          Length = 1041

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +1

Query: 269 ISESEVWEVQYDRCIKSNTSSTRILPAMICSEDGILGVIEQGEEPIELLAEPCAINS 325
           I  + V E+  +RC+   +S    +PA  CS +G +G+ E   + ++L  E   + +
Sbjct: 283 IIPATVTEIVQERCLSPTSSE---IPASCCSSNGSIGLDEDRIKLLDLEVESAQVET 444


>TC221178 similar to UP|PERX_NICSY (Q02200) Lignin forming anionic peroxidase
           precursor  , partial (61%)
          Length = 681

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 49  EIHSFKPNPLSFEFQSSWTSPSPISSI 75
           E+ SF+ N  S  +Q +W SPSP+  I
Sbjct: 450 EVPSFESNS*SSCYQMNWASPSPVLPI 370


>TC205618 similar to GB|AAL60196.1|18139887|AF441079 O-linked N-acetyl
           glucosamine transferase {Arabidopsis thaliana;} ,
           partial (15%)
          Length = 714

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 100 ADSTDARLVSEVSVPENELHLEGKCCIDL 128
           ADST   ++S+ S P     +EGK C+ L
Sbjct: 391 ADSTF*NMISQDSSPNGPCQIEGKSCVQL 305


>TC219821 weakly similar to UP|PJA1_MOUSE (O55176) Ubiquitin protein ligase
           Praja1  , partial (4%)
          Length = 1135

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -3

Query: 270 SESEVWEVQYDRCIKSNTSSTRILPAMICS---EDGILGVIEQGEEPIEL 316
           +ES + E+Q   CIK N    R++  M CS    D I  +I     P+ L
Sbjct: 545 TESLLVELQSRDCIKKNRIGFRVINMMFCSISILDSISYIIRDSTPPLSL 396


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.317    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,938,671
Number of Sequences: 63676
Number of extensions: 225590
Number of successful extensions: 1363
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of query: 339
length of database: 12,639,632
effective HSP length: 98
effective length of query: 241
effective length of database: 6,399,384
effective search space: 1542251544
effective search space used: 1542251544
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)