BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124964.9 - phase: 0
(108 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC216870 UP|Q6SS58 (Q6SS58) Bindin (Fragment), partial (7%) 137 8e-34
TC216871 homologue to UP|Q9PRJ1 (Q9PRJ1) Homeobox protein NKX3.2... 132 2e-32
BQ094842 weakly similar to GP|9757890|dbj phosphoribosylanthrani... 47 2e-06
TC204286 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr... 38 7e-04
TC216150 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, ... 38 8e-04
AI759839 36 0.002
TC216149 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, ... 36 0.002
TC231538 weakly similar to UP|Q6PJX0 (Q6PJX0) MADP-1 protein (Fr... 35 0.006
TC210262 weakly similar to UP|Q9W1V3 (Q9W1V3) CG9888-PA, partial... 34 0.009
TC226857 similar to UP|Q6QTF1 (Q6QTF1) EARLY FLOWERING 5, partia... 33 0.021
TC213615 similar to UP|Q9SUL7 (Q9SUL7) SNF1 like protein kinase ... 33 0.021
TC229992 weakly similar to UP|Q8XLG1 (Q8XLG1) Pseudouridylate sy... 33 0.027
TC230046 similar to UP|Q9LU79 (Q9LU79) Gb|AAF21150.1, partial (28%) 33 0.027
TC218046 weakly similar to PIR|T49196|T49196 nematode resistance... 32 0.036
TC220047 weakly similar to UP|FXC1_MOUSE (Q61572) Forkhead box p... 32 0.036
BI321012 GP|18699013|g Bck1-like MAP kinase kinase kinase {Podos... 32 0.036
TC226858 similar to UP|Q6QTF1 (Q6QTF1) EARLY FLOWERING 5, partia... 32 0.036
TC215397 weakly similar to UP|Q8S9J6 (Q8S9J6) AT5g10770/T30N20_4... 32 0.036
TC214797 homologue to UP|R15D_ARATH (Q9FY64) 40S ribosomal prote... 32 0.036
TC234951 weakly similar to UP|DHX9_MOUSE (O70133) ATP-dependent ... 27 1.5
>TC216870 UP|Q6SS58 (Q6SS58) Bindin (Fragment), partial (7%)
Length = 696
Score = 137 bits (345), Expect = 8e-34
Identities = 72/97 (74%), Positives = 79/97 (81%)
Frame = +2
Query: 12 NLARRALMGFSGAVVLGLSWSDEQSARAAARRPPPPPPKEKKDPNLSAAQAKVLASKKRK 71
+L RR LMG SGA +LGLS SDEQSA AARRPPPPPP EKKDPN+S QAKVLASK+RK
Sbjct: 311 SLRRRTLMGLSGAAMLGLSLSDEQSASGAARRPPPPPPTEKKDPNVSGVQAKVLASKRRK 490
Query: 72 EAMKAEVARLREQGKAVNINKEPPPPPPVVAAPPASE 108
EAMK EVARLRE+GK+V NK+ PPPPP PPASE
Sbjct: 491 EAMKEEVARLRERGKSV--NKQQPPPPP----PPASE 583
>TC216871 homologue to UP|Q9PRJ1 (Q9PRJ1) Homeobox protein NKX3.2 (NK class
homeodomain transcription factor NKX3.2), partial (7%)
Length = 744
Score = 132 bits (333), Expect = 2e-32
Identities = 71/93 (76%), Positives = 75/93 (80%)
Frame = +1
Query: 12 NLARRALMGFSGAVVLGLSWSDEQSARAAARRPPPPPPKEKKDPNLSAAQAKVLASKKRK 71
+L RR LMG SGA LGLS SDEQSAR AARRPPPPPP EKKDPN+S QAKVLASK+RK
Sbjct: 322 SLRRRTLMGLSGAATLGLSLSDEQSARGAARRPPPPPPTEKKDPNVSGVQAKVLASKRRK 501
Query: 72 EAMKAEVARLREQGKAVNINKEPPPPPPVVAAP 104
EAMK EVARLRE+GK V NKE PPPP AAP
Sbjct: 502 EAMKEEVARLRERGKPV--NKEAPPPP---AAP 585
>BQ094842 weakly similar to GP|9757890|dbj phosphoribosylanthranilate
transferase-like protein {Arabidopsis thaliana}, partial
(4%)
Length = 421
Score = 46.6 bits (109), Expect = 2e-06
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Frame = -2
Query: 3 DDALVGVVINLARRALMGFSGAVVLGLSWSDEQSARAAARRPPPPPPKEKKDPNLSAAQA 62
++ALV V+ + L G + L + + DE+ PPPPPP +K+ +
Sbjct: 378 EEALVYYVLE-KKYLLSMIQGEIGLKIYYVDEEKVLKIEEAPPPPPPPQKEAEITEPEKV 202
Query: 63 KVLASKKRKEAMKAEVARLREQGKAVNINKEPPPPPPVVAA----PPASE 108
+ + E K + ++E+ K N EPPPPP AA PP +E
Sbjct: 201 EETPPPQPPEGEKPKEEEMKEKEKE---NAEPPPPPAPAAATEKPPPEAE 61
>TC204286 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
precursor, partial (8%)
Length = 770
Score = 38.1 bits (87), Expect = 7e-04
Identities = 25/81 (30%), Positives = 33/81 (39%)
Frame = -3
Query: 25 VVLGLSWSDEQSARAAARRPPPPPPKEKKDPNLSAAQAKVLASKKRKEAMKAEVARLREQ 84
VVL L++ ++ AR P PPPP K P + KV+ K +
Sbjct: 402 VVLLLNYFLKKPPAKFARPPNPPPPPPPKPPKKPPSPPKVVPPLPPKPPKNPPPLPPKPP 223
Query: 85 GKAVNINKEPPPPPPVVAAPP 105
+ KEPPP PP PP
Sbjct: 222 KEPPTPPKEPPPTPPKKPCPP 160
>TC216150 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, partial (5%)
Length = 928
Score = 37.7 bits (86), Expect = 8e-04
Identities = 22/77 (28%), Positives = 35/77 (44%), Gaps = 3/77 (3%)
Frame = +3
Query: 26 VLGLSWSDEQSARAAARRPPPPPPKEKKDPNLSAAQAKVLASKK---RKEAMKAEVARLR 82
++ + + E + ++ P +EKK+ +AK KK +KE K E +
Sbjct: 357 IVSVGPAKEPEKKEEPKKEEPKKEEEKKEEPKKEGEAKKEEEKKEEPKKEEEKKEETKKE 536
Query: 83 EQGKAVNINKEPPPPPP 99
E+ K KE PPPPP
Sbjct: 537 EEKKEEEKKKEAPPPPP 587
>AI759839
Length = 416
Score = 36.2 bits (82), Expect = 0.002
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 80 RLREQGKAVNINKEPPPPPPVVAAPPAS 107
R+R Q + +N EPPPPPP + PPA+
Sbjct: 71 RIRNQKRFQMLNPEPPPPPPPMMVPPAT 154
>TC216149 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, partial (4%)
Length = 2040
Score = 36.2 bits (82), Expect = 0.002
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Frame = +3
Query: 31 WSDEQSARAAARRPPP---PPPKEKKDPNLSAAQAKVLASKK---RKEAMKAEVARLREQ 84
W + + A+ P P +EKK+ +AK KK +KE K E + E+
Sbjct: 1197 WQTDILSVGPAKEPEKKEEPKKEEKKEEPKKEGEAKKEEEKKEEPKKEEEKKEEPKKEEE 1376
Query: 85 GKAVNINKEPPPPPP 99
K KE PPPPP
Sbjct: 1377 KKEEEKKKEAPPPPP 1421
>TC231538 weakly similar to UP|Q6PJX0 (Q6PJX0) MADP-1 protein (Fragment),
partial (36%)
Length = 817
Score = 35.0 bits (79), Expect = 0.006
Identities = 21/79 (26%), Positives = 31/79 (38%), Gaps = 3/79 (3%)
Frame = +3
Query: 32 SDEQSARAAARRPPPPPPKEKKDPNLSAAQAKVLASKKRKEAMKAEVARLREQ---GKAV 88
S S + R PP + P+ A A+ + +A +R + G+
Sbjct: 276 STTPSRTPTSTRSSPPSAASRASPSSRTATRASAAAWPSSSSCRATTRTMRPRRWTGRCS 455
Query: 89 NINKEPPPPPPVVAAPPAS 107
PPP PP AAPP+S
Sbjct: 456 TAAPSPPPSPPTTAAPPSS 512
>TC210262 weakly similar to UP|Q9W1V3 (Q9W1V3) CG9888-PA, partial (12%)
Length = 664
Score = 34.3 bits (77), Expect = 0.009
Identities = 25/86 (29%), Positives = 37/86 (42%), Gaps = 14/86 (16%)
Frame = -1
Query: 37 ARAAARRPPPPPPKEK-KDP-----------NLSAAQAKVLA--SKKRKEAMKAEVARLR 82
A A RPPP PP+ +DP A + L S +R++A + R
Sbjct: 424 ASVAPHRPPPLPPRPPPRDPLRQRRHPARRRRRRAPDSSALG*GSVRRRDAASGDG*ATR 245
Query: 83 EQGKAVNINKEPPPPPPVVAAPPASE 108
+ + + +E PPPPP +PP E
Sbjct: 244 FRPRTPSPRRE*PPPPPPPTSPPRGE 167
>TC226857 similar to UP|Q6QTF1 (Q6QTF1) EARLY FLOWERING 5, partial (21%)
Length = 733
Score = 33.1 bits (74), Expect = 0.021
Identities = 16/56 (28%), Positives = 27/56 (47%)
Frame = +2
Query: 44 PPPPPPKEKKDPNLSAAQAKVLASKKRKEAMKAEVARLREQGKAVNINKEPPPPPP 99
PPPPPP ++ P ++R ++ + + +E G+ + PPPPPP
Sbjct: 47 PPPPPPLQQSQPPPPGTN----GGERRNQSALTDDSPSKEPGQ---VQLPPPPPPP 193
Score = 26.6 bits (57), Expect = 2.0
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +2
Query: 44 PPPPPPKEKKDPNLSAAQAKVLASKKRKEAMKAEVARLREQGKAVNINKEPPPPPP 99
PPPPPPK + ++ K ++ E A +R + +A +P P P
Sbjct: 176 PPPPPPKPSYVKSAASTVVKRPLAQHTPELTAMVPASVRVRREAAVSKTKPKPAVP 343
Score = 24.3 bits (51), Expect = 9.7
Identities = 13/56 (23%), Positives = 19/56 (33%)
Frame = +2
Query: 44 PPPPPPKEKKDPNLSAAQAKVLASKKRKEAMKAEVARLREQGKAVNINKEPPPPPP 99
PPPP P K + + + AM R+R + +P P P
Sbjct: 182 PPPPKPSYVKSAASTVVKRPLAQHTPELTAMVPASVRVRREAAVSKTKPKPAVPGP 349
>TC213615 similar to UP|Q9SUL7 (Q9SUL7) SNF1 like protein kinase
(CBL-interacting protein kinase 4), partial (45%)
Length = 674
Score = 33.1 bits (74), Expect = 0.021
Identities = 20/62 (32%), Positives = 28/62 (44%)
Frame = +1
Query: 44 PPPPPPKEKKDPNLSAAQAKVLASKKRKEAMKAEVARLREQGKAVNINKEPPPPPPVVAA 103
PPPPPP+ ++P Q + L + RLR +A+ + PP PPP
Sbjct: 256 PPPPPPQHPQNPRGPRHQDQDLPHR-----------RLRRWRRAL-LQAHPPRPPPGAPR 399
Query: 104 PP 105
PP
Sbjct: 400 PP 405
Score = 25.8 bits (55), Expect = 3.3
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = +1
Query: 44 PPPPPPKEKKDPNLSAAQAK--VLASKKRKEAMKAEV---ARLREQGKAVNINKEPPPPP 98
PP PPP + P L AA+ + +L R+ R R Q + + + PP
Sbjct: 370 PPRPPPGAPRPPLLRAARLRSPLLPPPWRRPPRPQATEPPPRRRRQPQGLRLRPLRPPGT 549
Query: 99 PVVAAPP 105
P +PP
Sbjct: 550 PPRRSPP 570
>TC229992 weakly similar to UP|Q8XLG1 (Q8XLG1) Pseudouridylate synthase,
partial (33%)
Length = 1280
Score = 32.7 bits (73), Expect = 0.027
Identities = 25/94 (26%), Positives = 37/94 (38%), Gaps = 3/94 (3%)
Frame = +1
Query: 15 RRALMGFSGAVVLGLSWSDEQSARAAARRPPPPPPKEKKD---PNLSAAQAKVLASKKRK 71
R + G SGA S S++ RA++ PPP P+ K+ P + KR
Sbjct: 217 RSSSRGSSGART-ATSGSNQNLPRASSMPSPPPKPEPKRTISKPKPPPPPPPTPLNLKRL 393
Query: 72 EAMKAEVARLREQGKAVNINKEPPPPPPVVAAPP 105
+ R R G ++ PPP +PP
Sbjct: 394 APQRRRSIRRRRGGSITKTSRNPPPRASARFSPP 495
>TC230046 similar to UP|Q9LU79 (Q9LU79) Gb|AAF21150.1, partial (28%)
Length = 1798
Score = 32.7 bits (73), Expect = 0.027
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +3
Query: 44 PPPPPPKEKKDPNLSAAQAKVLASKKRKEAMKAEVARLREQGKAVNINKEPPPPPPVVAA 103
PPPPPP P SA +K + ++E+ + + I + PPP PP
Sbjct: 795 PPPPPPPPPPPPE-SARHNTRRTHRKVERERESEITVELDDHEFTTI-RSPPPAPPTPPQ 968
Query: 104 PPA 106
PP+
Sbjct: 969 PPS 977
Score = 30.4 bits (67), Expect = 0.14
Identities = 22/75 (29%), Positives = 30/75 (39%), Gaps = 3/75 (4%)
Frame = +3
Query: 28 GLSWSDEQSARAAARRPPPPPPKEKKDPNLSAAQAKVLASKKRKEAMKAEVARLREQGKA 87
GL S + + +A PPPPPP ++K + + R V E A
Sbjct: 1227 GLGKSKKIHSVSAPPPPPPPPPSKRKSQTPPPPEPPQRRNSGRPPLPNRTVTFNDETLNA 1406
Query: 88 VN---INKEPPPPPP 99
N + PPPPPP
Sbjct: 1407 GNQSPLIPVPPPPPP 1451
Score = 30.4 bits (67), Expect = 0.14
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 28/91 (30%)
Frame = +3
Query: 42 RRPPPPPPKEKKDPNLSAAQAKVLASKKRKEAMKAEVARL------------REQGKAVN 89
R PPP PP + P++ + S +RK +K E+A + ++Q N
Sbjct: 933 RSPPPAPPTPPQPPSVKTRSER--KSDRRKSTVKREMAMIWASVLSNQRKKKKKQKTKNN 1106
Query: 90 INKEP----------------PPPPPVVAAP 104
N++P PPPPP P
Sbjct: 1107 ENQDPQYDDNADELTNNTTVPPPPPPPPPLP 1199
Score = 28.1 bits (61), Expect = 0.67
Identities = 20/68 (29%), Positives = 27/68 (39%)
Frame = +3
Query: 32 SDEQSARAAARRPPPPPPKEKKDPNLSAAQAKVLASKKRKEAMKAEVARLREQGKAVNIN 91
+DE + PPPPPP V S RK K++ K +++
Sbjct: 1137 ADELTNNTTVPPPPPPPP----------PLPSVFHSLFRKGLGKSK--------KIHSVS 1262
Query: 92 KEPPPPPP 99
PPPPPP
Sbjct: 1263 APPPPPPP 1286
Score = 25.4 bits (54), Expect = 4.4
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Frame = +3
Query: 38 RAAARRPPPPPPKEKKDPNLSAAQAKVLASKKRKEAMK---AEVARLREQGKAVNINKEP 94
R+ AR P K+ P Q +++++ +K + +R V P
Sbjct: 621 RSPAREHFPAVEHRKRWPESPQPQQHQHQYQQQEDQVKDIPVDTFEIRPSPPPVKSTSPP 800
Query: 95 PPPPPVVAAPPAS 107
PPPPP P ++
Sbjct: 801 PPPPPPPPPPESA 839
>TC218046 weakly similar to PIR|T49196|T49196 nematode resistance-like protein
- Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(77%)
Length = 1617
Score = 32.3 bits (72), Expect = 0.036
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = -1
Query: 44 PPPPPPKEKKDPNLSAAQAKVLASKKRKEAMKAEVARLREQGKAVNINKEP--PPPPPVV 101
P PPP +S++ + AS E + ++ R + + P PPPPP+
Sbjct: 1251 PSPPPTPAYTRRRISSSPPQSPASPATSEPSRTRSSKRRASSPPLESSVLPSDPPPPPIS 1072
Query: 102 AAPPASE 108
AP AS+
Sbjct: 1071 PAPCASD 1051
>TC220047 weakly similar to UP|FXC1_MOUSE (Q61572) Forkhead box protein C1
(Forkhead-related protein FKHL7) (Forkhead-related
transcription factor 3) (FREAC-3) (Transcription factor
FKH-1) (Mesoderm/mesenchyme forkhead 1) (MF-1), partial
(5%)
Length = 684
Score = 32.3 bits (72), Expect = 0.036
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +3
Query: 39 AAARRPPPPPPKEKKDPNLSAAQAKVLASKKRKEAMKAEVARLREQGKAVNINKEPPPPP 98
++ ++ P KEKKD S ++ K +K + ++ A +K PPPPP
Sbjct: 336 SSVKKALSPDSKEKKDQKSSKSKKKWFGKQKFETSVSYSEA-----------DKAPPPPP 482
Query: 99 PVVAAPPASE 108
P+ PP E
Sbjct: 483 PI---PPPEE 503
>BI321012 GP|18699013|g Bck1-like MAP kinase kinase kinase {Podospora
anserina}, partial (1%)
Length = 319
Score = 32.3 bits (72), Expect = 0.036
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 81 LREQGKAVNINKEPPPPPPVVAAPPAS 107
+R Q +N EPPPPPP + PPA+
Sbjct: 47 VRNQKGFQMLNPEPPPPPPPMMVPPAT 127
Score = 26.9 bits (58), Expect = 1.5
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -2
Query: 33 DEQSARAAARRPPPPPPKEKKDPNLSAAQAKVLASKKRKEAMKAEVARLR 82
D A A +PPPPPP+ ++ K + K++E+ R+R
Sbjct: 318 DVDGAEAEXEKPPPPPPEGGEE---KVVPCKEIGVVKKEESTSKGGIRVR 178
>TC226858 similar to UP|Q6QTF1 (Q6QTF1) EARLY FLOWERING 5, partial (26%)
Length = 1071
Score = 32.3 bits (72), Expect = 0.036
Identities = 17/62 (27%), Positives = 28/62 (44%)
Frame = +3
Query: 44 PPPPPPKEKKDPNLSAAQAKVLASKKRKEAMKAEVARLREQGKAVNINKEPPPPPPVVAA 103
PPPPPP ++ P ++R ++ + + +E G+ + PPPPP
Sbjct: 60 PPPPPPLQQSQPPPPGTN----GGERRNQSALTDDSPSKEPGQV-----QLPPPPPHSQV 212
Query: 104 PP 105
PP
Sbjct: 213 PP 218
Score = 29.6 bits (65), Expect = 0.23
Identities = 17/59 (28%), Positives = 26/59 (43%)
Frame = +3
Query: 41 ARRPPPPPPKEKKDPNLSAAQAKVLASKKRKEAMKAEVARLREQGKAVNINKEPPPPPP 99
A RPPPPPPK + ++ K ++ E A +R + +A +P P P
Sbjct: 606 ATRPPPPPPKPSYVKSAASTVVKRPLAQHTPELTAMVPASVRVRREAAVSKTKPKPAVP 782
Score = 29.3 bits (64), Expect = 0.30
Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 25/98 (25%)
Frame = +3
Query: 33 DEQSARAAARRPPPPPPKEKKDPNLSAAQAK--VLASKKRKEAMKAEVARL-------RE 83
D S + PPPPP + P Q+ VL+++ + E+ ++ R+
Sbjct: 150 DSPSKEPGQVQLPPPPPHSQVPPMAGVIQSDGAVLSTENKNSLSSQEIPKMVAGHPPPRQ 329
Query: 84 QGKAVN----------------INKEPPPPPPVVAAPP 105
Q I++ PPPPPP PP
Sbjct: 330 QPPVPGPMLIPSLQPDVLLPPGISRFPPPPPPPDMKPP 443
Score = 28.5 bits (62), Expect = 0.52
Identities = 20/65 (30%), Positives = 25/65 (37%)
Frame = +3
Query: 41 ARRPPPPPPKEKKDPNLSAAQAKVLASKKRKEAMKAEVARLREQGKAVNINKEPPPPPPV 100
+R PPPPPP + K P A + A M + G PPP PP
Sbjct: 399 SRFPPPPPPPDMKPP---LPVAGLPAQAPPPPGMMVPLMPRPPYG--------PPPGPPP 545
Query: 101 VAAPP 105
+ PP
Sbjct: 546 MMRPP 560
Score = 25.8 bits (55), Expect = 3.3
Identities = 16/67 (23%), Positives = 24/67 (34%), Gaps = 1/67 (1%)
Frame = +3
Query: 34 EQSARAAARRPPPPP-PKEKKDPNLSAAQAKVLASKKRKEAMKAEVARLREQGKAVNINK 92
++ A R PPPPP P K + + + AM R+R +
Sbjct: 588 QEEDHMATRPPPPPPKPSYVKSAASTVVKRPLAQHTPELTAMVPASVRVRREAAVSKTKP 767
Query: 93 EPPPPPP 99
+P P P
Sbjct: 768 KPAVPGP 788
>TC215397 weakly similar to UP|Q8S9J6 (Q8S9J6) AT5g10770/T30N20_40, partial
(76%)
Length = 1447
Score = 32.3 bits (72), Expect = 0.036
Identities = 20/65 (30%), Positives = 29/65 (43%)
Frame = +1
Query: 35 QSARAAARRPPPPPPKEKKDPNLSAAQAKVLASKKRKEAMKAEVARLREQGKAVNINKEP 94
+S+ A+ PP PP P AA + S A + V+ L AV+ ++ P
Sbjct: 562 KSSPTASPPPPAPPATSPSAPPPQAATSSTPPSPPSPAAPPSTVSILLPSP*AVSNSQSP 741
Query: 95 PPPPP 99
PPP P
Sbjct: 742 PPPSP 756
>TC214797 homologue to UP|R15D_ARATH (Q9FY64) 40S ribosomal protein S15-4,
partial (95%)
Length = 798
Score = 32.3 bits (72), Expect = 0.036
Identities = 17/45 (37%), Positives = 24/45 (52%)
Frame = -3
Query: 36 SARAAARRPPPPPPKEKKDPNLSAAQAKVLASKKRKEAMKAEVAR 80
S+ AA + PPPPPP + + A+VLAS + KA A+
Sbjct: 139 SSLAALQPPPPPPPPHQPQRLPFSPAARVLASNNNNKQEKAVAAK 5
>TC234951 weakly similar to UP|DHX9_MOUSE (O70133) ATP-dependent RNA
helicase A (Nuclear DNA helicase II) (NDH II) (DEAH-box
protein 9) (mHEL-5), partial (3%)
Length = 460
Score = 26.9 bits (58), Expect = 1.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 44 PPPPPPKEKKDPN 56
PPPPPP+E PN
Sbjct: 70 PPPPPPEETTPPN 108
Score = 24.6 bits (52), Expect = 7.4
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +1
Query: 94 PPPPPPVVAAPP 105
PPPPPP PP
Sbjct: 70 PPPPPPEETTPP 105
Score = 24.3 bits (51), Expect = 9.7
Identities = 16/61 (26%), Positives = 19/61 (30%)
Frame = +1
Query: 45 PPPPPKEKKDPNLSAAQAKVLASKKRKEAMKAEVARLREQGKAVNINKEPPPPPPVVAAP 104
PPPPP +P+L + PP PP VAAP
Sbjct: 31 PPPPPPNSDNPSLPPPPPP---------------------------EETTPPNPPSVAAP 129
Query: 105 P 105
P
Sbjct: 130 P 132
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.311 0.128 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,018,255
Number of Sequences: 63676
Number of extensions: 125770
Number of successful extensions: 8421
Number of sequences better than 10.0: 787
Number of HSP's better than 10.0 without gapping: 3039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6590
length of query: 108
length of database: 12,639,632
effective HSP length: 84
effective length of query: 24
effective length of database: 7,290,848
effective search space: 174980352
effective search space used: 174980352
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)
Medicago: description of AC124964.9