BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC119419.1 + phase: 0 /partial
(107 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC216405 UP|RS13_SOYBN (P62302) 40S ribosomal protein S13, parti... 207 8e-55
TC225449 UP|RS13_SOYBN (P62302) 40S ribosomal protein S13, complete 207 8e-55
BM885857 homologue to GP|8131699|dbj| cytoplasmic ribosomal prot... 105 4e-24
BE331076 weakly similar to GP|8131699|dbj cytoplasmic ribosomal ... 104 6e-24
BG352710 similar to GP|14190367|gb| AT3g60770/T4C21_180 {Arabido... 101 5e-23
BG352925 similar to GP|14190367|gb| AT3g60770/T4C21_180 {Arabido... 94 8e-21
BF068036 similar to GP|8131699|dbj| cytoplasmic ribosomal protei... 90 2e-19
BM732780 89 4e-19
BF425068 similar to GP|8131699|dbj| cytoplasmic ribosomal protei... 88 7e-19
BE802358 similar to GP|14190367|gb| AT3g60770/T4C21_180 {Arabido... 82 5e-17
TC216408 GB|AAK96445.1|15450535|AY052731 AT3g60770/T4C21_180 {Ar... 70 2e-13
AW278552 weakly similar to GP|14190367|gb| AT3g60770/T4C21_180 {... 64 1e-11
TC216406 GB|AAK96445.1|15450535|AY052731 AT3g60770/T4C21_180 {Ar... 60 2e-10
AI441958 weakly similar to GP|8131699|dbj| cytoplasmic ribosomal... 50 1e-07
TC212827 similar to UP|Q6H974 (Q6H974) SEU1 protein, partial (7%) 28 0.68
TC216949 similar to UP|Q8L982 (Q8L982) Autophagocytosis protein-... 27 2.0
TC222293 similar to UP|Q9BAD4 (Q9BAD4) Ycf2 (Fragment), partial ... 26 2.6
BF068531 25 7.5
TC217186 similar to UP|Q8L7Z1 (Q8L7Z1) AT5g16250/T21H19_170, par... 25 7.5
TC208487 similar to UP|Q94A27 (Q94A27) At3g14201 (At3g14201/at3g... 25 7.5
>TC216405 UP|RS13_SOYBN (P62302) 40S ribosomal protein S13, partial (79%)
Length = 674
Score = 207 bits (526), Expect = 8e-55
Identities = 102/107 (95%), Positives = 105/107 (97%)
Frame = +1
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V+E ICKFAKKGLTPSQIGVILRDSHGIAQV +VTG+KILRILKAHGLAPEIPEDLYHLI
Sbjct: 46 VEENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTGSKILRILKAHGLAPEIPEDLYHLI 225
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 226 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 366
>TC225449 UP|RS13_SOYBN (P62302) 40S ribosomal protein S13, complete
Length = 1016
Score = 207 bits (526), Expect = 8e-55
Identities = 102/107 (95%), Positives = 105/107 (97%)
Frame = +1
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V+E ICKFAKKGLTPSQIGVILRDSHGIAQV +VTG+KILRILKAHGLAPEIPEDLYHLI
Sbjct: 214 VEENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTGSKILRILKAHGLAPEIPEDLYHLI 393
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 394 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 534
>BM885857 homologue to GP|8131699|dbj| cytoplasmic ribosomal protein S13
{Panax ginseng}, partial (59%)
Length = 354
Score = 105 bits (261), Expect = 4e-24
Identities = 51/58 (87%), Positives = 54/58 (92%)
Frame = +1
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYH 58
V+E ICKF KGLTPSQIGVILRDSHGIAQV +VTG+KILRILKAHGLAPEIPEDLYH
Sbjct: 181 VEENICKFFFKGLTPSQIGVILRDSHGIAQVNSVTGSKILRILKAHGLAPEIPEDLYH 354
>BE331076 weakly similar to GP|8131699|dbj cytoplasmic ribosomal protein S13
{Panax ginseng}, partial (71%)
Length = 355
Score = 104 bits (260), Expect = 6e-24
Identities = 49/77 (63%), Positives = 58/77 (74%)
Frame = +2
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
+ E ICKF KK LTPSQI +IL DSH I + +T +KILRIL+ H L P+IPE+LYHLI
Sbjct: 95 IKENICKFTKKSLTPSQINIILIDSHDIDSINTITSSKILRILEXHRLTPKIPENLYHLI 274
Query: 61 KKAVSIRKHLERNRKDK 77
KK VSIR HL NR+DK
Sbjct: 275 KKTVSIRNHLXENRRDK 325
>BG352710 similar to GP|14190367|gb| AT3g60770/T4C21_180 {Arabidopsis
thaliana}, partial (47%)
Length = 226
Score = 101 bits (252), Expect = 5e-23
Identities = 51/64 (79%), Positives = 55/64 (85%)
Frame = -1
Query: 44 KAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKL 103
K GLAP IP+D + LIKKAVSIRKHL RNRK KDSKFRLI VES+I RLAR+YKKTKKL
Sbjct: 226 KVTGLAP*IPKDFFPLIKKAVSIRKHL*RNRKAKDSKFRLIFVESKIPRLARFYKKTKKL 47
Query: 104 PPVW 107
PPVW
Sbjct: 46 PPVW 35
>BG352925 similar to GP|14190367|gb| AT3g60770/T4C21_180 {Arabidopsis
thaliana}, partial (50%)
Length = 250
Score = 94.4 bits (233), Expect = 8e-21
Identities = 48/70 (68%), Positives = 56/70 (79%)
Frame = -1
Query: 38 KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYY 97
K LKA G +IP+DL HLIKKAVSIRKHL+RN K++DSKFRLIL+ SRIHR AR +
Sbjct: 244 KSFPFLKAIGPRHKIPQDLNHLIKKAVSIRKHLDRNSKNQDSKFRLILL*SRIHRPARSF 65
Query: 98 KKTKKLPPVW 107
KK+ KLPPVW
Sbjct: 64 KKSNKLPPVW 35
>BF068036 similar to GP|8131699|dbj| cytoplasmic ribosomal protein S13 {Panax
ginseng}, partial (56%)
Length = 316
Score = 89.7 bits (221), Expect = 2e-19
Identities = 49/80 (61%), Positives = 60/80 (74%)
Frame = +2
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V + ICK+A GLT S I VILRD +GIA V +VTG+ ILRILKAH LAPEIP+DLYHL
Sbjct: 80 VYKNICKYANNGLTSSNIAVILRDCYGIAHVNSVTGS*ILRILKAHRLAPEIPDDLYHLD 259
Query: 61 KKAVSIRKHLERNRKDKDSK 80
+ VSI++ + R RK K +K
Sbjct: 260 YRCVSIQEAILR-RKHKRTK 316
>BM732780
Length = 421
Score = 88.6 bits (218), Expect = 4e-19
Identities = 43/48 (89%), Positives = 46/48 (95%)
Frame = +1
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGL 48
V+E ICKFAKKGLTPSQIGVILRDSHGIAQV +VTG+KILRILKAHGL
Sbjct: 244 VEENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTGSKILRILKAHGL 387
>BF425068 similar to GP|8131699|dbj| cytoplasmic ribosomal protein S13 {Panax
ginseng}, partial (35%)
Length = 277
Score = 87.8 bits (216), Expect = 7e-19
Identities = 43/57 (75%), Positives = 50/57 (87%)
Frame = +2
Query: 10 KKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSI 66
+K LTPSQIGVI+RDSHG+AQV +V+G+ ILRILKAH LAPEIPEDLYHLIK A +
Sbjct: 107 RKVLTPSQIGVIVRDSHGLAQVNSVSGSIILRILKAH*LAPEIPEDLYHLIKNAAEL 277
>BE802358 similar to GP|14190367|gb| AT3g60770/T4C21_180 {Arabidopsis
thaliana}, partial (13%)
Length = 199
Score = 81.6 bits (200), Expect = 5e-17
Identities = 40/66 (60%), Positives = 49/66 (73%)
Frame = +2
Query: 41 RILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKT 100
RIL+ HGLAPEI EDL+H I+ A +I+ +ERNR D DS+ RLI V+SR RL RYY T
Sbjct: 2 RILETHGLAPEIAEDLFHSIRNAPTIKMLVERNRMDTDSQ*RLIFVDSRFRRLTRYYTNT 181
Query: 101 KKLPPV 106
K LPP+
Sbjct: 182 KILPPL 199
>TC216408 GB|AAK96445.1|15450535|AY052731 AT3g60770/T4C21_180 {Arabidopsis
thaliana;} , partial (22%)
Length = 606
Score = 70.1 bits (170), Expect = 2e-13
Identities = 32/33 (96%), Positives = 33/33 (99%)
Frame = +1
Query: 75 KDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
+DKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 1 EDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 99
>AW278552 weakly similar to GP|14190367|gb| AT3g60770/T4C21_180 {Arabidopsis
thaliana}, partial (41%)
Length = 202
Score = 63.9 bits (154), Expect = 1e-11
Identities = 33/56 (58%), Positives = 38/56 (66%)
Frame = -1
Query: 52 IPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
+P+ L HL ++VSI H E NRKD SK RL L ESRI L RYYKK +LPPVW
Sbjct: 202 LPQVLSHLDTESVSIG*HPESNRKDSRSKSRLFLAESRILPLVRYYKKPNELPPVW 35
>TC216406 GB|AAK96445.1|15450535|AY052731 AT3g60770/T4C21_180 {Arabidopsis
thaliana;} , partial (26%)
Length = 372
Score = 59.7 bits (143), Expect = 2e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +2
Query: 81 FRLILVESRIHRLARYYKKTKKLPPVW 107
FRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 2 FRLILVESRIHRLARYYKKTKKLPPVW 82
>AI441958 weakly similar to GP|8131699|dbj| cytoplasmic ribosomal protein S13
{Panax ginseng}, partial (21%)
Length = 307
Score = 50.4 bits (119), Expect = 1e-07
Identities = 31/86 (36%), Positives = 41/86 (47%)
Frame = +2
Query: 1 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
V + ICK AKKGLTP +I IL++ HG ++ A K L K L P I + L L+
Sbjct: 50 VKKIICKLAKKGLTPFKIVAILKNFHGFVKLIASLAGKFL*FSKVTELCPRIHKSLTILV 229
Query: 61 KKAVSIRKHLERNRKDKDSKFRLILV 86
+ A R R+ S L V
Sbjct: 230 RMAFQFRSIFCETRRSMASNLWLFFV 307
>TC212827 similar to UP|Q6H974 (Q6H974) SEU1 protein, partial (7%)
Length = 423
Score = 28.1 bits (61), Expect = 0.68
Identities = 16/61 (26%), Positives = 30/61 (48%), Gaps = 4/61 (6%)
Frame = -2
Query: 18 IGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI----KKAVSIRKHLERN 73
+G+ + HGI +K + N +LR + G+ + H+I +++ + HLER
Sbjct: 410 LGITTLELHGILSLKKLLYNLLLRHILLFGIQSIFLRQMRHIIWILNERSRDLCTHLERR 231
Query: 74 R 74
R
Sbjct: 230 R 228
>TC216949 similar to UP|Q8L982 (Q8L982) Autophagocytosis protein-like,
partial (60%)
Length = 933
Score = 26.6 bits (57), Expect = 2.0
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 38 KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLE 71
KI+ +L +HG+ PE+ + L+ +K S+ +E
Sbjct: 498 KIIDVLMSHGVEPEVDKYLFLFLKFMASVIPTIE 599
>TC222293 similar to UP|Q9BAD4 (Q9BAD4) Ycf2 (Fragment), partial (5%)
Length = 1145
Score = 26.2 bits (56), Expect = 2.6
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Frame = -2
Query: 18 IGVILRDSHGIAQ-------VKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
IG ++++ GI+ ++ NKI +LK L E P L HL+
Sbjct: 340 IGCLIKNPRGISNHLTDNLIIQPSLNNKIKSLLKLSSLTSEQPNRLIHLL 191
>BF068531
Length = 350
Score = 24.6 bits (52), Expect = 7.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 57 YHLIKKAVSIRKHLERNRKDKDSKFRLILVESR 89
+HL+ I KH++ + K +D +F I + SR
Sbjct: 87 HHLLLHQTYITKHIDDHIKRRDKQFPSIKLNSR 185
>TC217186 similar to UP|Q8L7Z1 (Q8L7Z1) AT5g16250/T21H19_170, partial (74%)
Length = 534
Score = 24.6 bits (52), Expect = 7.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 52 IPEDLYHLIKKAVSIRKHLERNRKDKDSK 80
+P L +K RKH RNR KDS+
Sbjct: 427 LPNIRLQLTQKIAGPRKHQHRNRTLKDSR 341
>TC208487 similar to UP|Q94A27 (Q94A27) At3g14201 (At3g14201/at3g14201) (SAC
domain protein 2), partial (6%)
Length = 955
Score = 24.6 bits (52), Expect = 7.5
Identities = 14/38 (36%), Positives = 21/38 (54%)
Frame = -1
Query: 31 VKAVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK 68
+K TG I+ L H E+P D+YH + A+ +RK
Sbjct: 886 IKFYTGWVIMVSL*RH--KNELPIDIYHYLNDALPLRK 779
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.139 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,869,885
Number of Sequences: 63676
Number of extensions: 36524
Number of successful extensions: 198
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of query: 107
length of database: 12,639,632
effective HSP length: 83
effective length of query: 24
effective length of database: 7,354,524
effective search space: 176508576
effective search space used: 176508576
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)
Medicago: description of AC119419.1