BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33212.1 39 aa
(39 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
PSBF_LOTJA (Q9BBR6) Cytochrome b559 beta subunit (PSII reaction ... 81 6e-16
PSBF_POPDE (P62099) Cytochrome b559 beta subunit (PSII reaction ... 80 1e-15
PSBF_PEA (P62096) Cytochrome b559 beta subunit (PSII reaction ce... 80 1e-15
PSBF_OENHO (P62098) Cytochrome b559 beta subunit (PSII reaction ... 80 1e-15
PSBF_OENBE (P62097) Cytochrome b559 beta subunit (PSII reaction ... 80 1e-15
PSBF_ARATH (P62095) Cytochrome b559 beta subunit (PSII reaction ... 80 1e-15
PSBF_BETVU (P46613) Cytochrome b559 beta subunit (PSII reaction ... 79 2e-15
PSBF_PINKO (Q85X32) Cytochrome b559 beta subunit (PSII reaction ... 78 5e-15
PSBF_ORYSA (P12088) Cytochrome b559 beta subunit (PSII reaction ... 77 7e-15
PSBF_ATRBE (P60250) Cytochrome b559 beta subunit (PSII reaction ... 77 7e-15
PSBF_ANTFO (P60249) Cytochrome b559 beta subunit (PSII reaction ... 77 7e-15
PSBF_AMBTC (P60248) Cytochrome b559 beta subunit (PSII reaction ... 77 7e-15
PSBF_PINTH (P41616) Cytochrome b559 beta subunit (PSII reaction ... 77 9e-15
PSBF_CHAGL (P60251) Cytochrome b559 beta subunit (PSII reaction ... 77 9e-15
PSBF_PSINU (Q8WI05) Cytochrome b559 beta subunit (PSII reaction ... 76 2e-14
PSBF_MARPO (P06853) Cytochrome b559 beta subunit (PSII reaction ... 76 2e-14
PSBF_WHEAT (P60125) Cytochrome b559 beta subunit (PSII reaction ... 75 3e-14
PSBF_TOBAC (P60124) Cytochrome b559 beta subunit (PSII reaction ... 75 3e-14
PSBF_SPIOL (P60128) Cytochrome b559 beta subunit (PSII reaction ... 75 3e-14
PSBF_SECCE (P60127) Cytochrome b559 beta subunit (PSII reaction ... 75 3e-14
>PSBF_LOTJA (Q9BBR6) Cytochrome b559 beta subunit (PSII reaction
center subunit VI)
Length = 39
Score = 80.9 bits (198), Expect = 6e-16
Identities = 39/39 (100%), Positives = 39/39 (100%)
Query: 1 MTIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
MTIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR
Sbjct: 1 MTIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
>PSBF_POPDE (P62099) Cytochrome b559 beta subunit (PSII reaction
center subunit VI)
Length = 39
Score = 79.7 bits (195), Expect = 1e-15
Identities = 38/39 (97%), Positives = 39/39 (99%)
Query: 1 MTIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
MTIDRT+PIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR
Sbjct: 1 MTIDRTYPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
>PSBF_PEA (P62096) Cytochrome b559 beta subunit (PSII reaction
center subunit VI)
Length = 39
Score = 79.7 bits (195), Expect = 1e-15
Identities = 38/39 (97%), Positives = 39/39 (99%)
Query: 1 MTIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
MTIDRT+PIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR
Sbjct: 1 MTIDRTYPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
>PSBF_OENHO (P62098) Cytochrome b559 beta subunit (PSII reaction
center subunit VI)
Length = 39
Score = 79.7 bits (195), Expect = 1e-15
Identities = 38/39 (97%), Positives = 39/39 (99%)
Query: 1 MTIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
MTIDRT+PIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR
Sbjct: 1 MTIDRTYPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
>PSBF_OENBE (P62097) Cytochrome b559 beta subunit (PSII reaction
center subunit VI)
Length = 39
Score = 79.7 bits (195), Expect = 1e-15
Identities = 38/39 (97%), Positives = 39/39 (99%)
Query: 1 MTIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
MTIDRT+PIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR
Sbjct: 1 MTIDRTYPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
>PSBF_ARATH (P62095) Cytochrome b559 beta subunit (PSII reaction
center subunit VI)
Length = 39
Score = 79.7 bits (195), Expect = 1e-15
Identities = 38/39 (97%), Positives = 39/39 (99%)
Query: 1 MTIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
MTIDRT+PIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR
Sbjct: 1 MTIDRTYPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
>PSBF_BETVU (P46613) Cytochrome b559 beta subunit (PSII reaction
center subunit VI)
Length = 39
Score = 79.3 bits (194), Expect = 2e-15
Identities = 37/39 (94%), Positives = 39/39 (99%)
Query: 1 MTIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
MTIDRT+PIFTVRWLAVHGLA+PTVSFLGSISAMQFIQR
Sbjct: 1 MTIDRTYPIFTVRWLAVHGLAIPTVSFLGSISAMQFIQR 39
>PSBF_PINKO (Q85X32) Cytochrome b559 beta subunit (PSII reaction
center subunit VI)
Length = 39
Score = 77.8 bits (190), Expect = 5e-15
Identities = 37/39 (94%), Positives = 38/39 (96%)
Query: 1 MTIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
MT+DRTFPIFTVRWLAVHGLAVPTV FLGSISAMQFIQR
Sbjct: 1 MTLDRTFPIFTVRWLAVHGLAVPTVFFLGSISAMQFIQR 39
>PSBF_ORYSA (P12088) Cytochrome b559 beta subunit (PSII reaction
center subunit VI)
Length = 39
Score = 77.4 bits (189), Expect = 7e-15
Identities = 37/39 (94%), Positives = 38/39 (96%)
Query: 1 MTIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
MTIDRT+PIFTVRWLAVHGLAVPTV FLGSISAMQFIQR
Sbjct: 1 MTIDRTYPIFTVRWLAVHGLAVPTVFFLGSISAMQFIQR 39
>PSBF_ATRBE (P60250) Cytochrome b559 beta subunit (PSII reaction
center subunit VI)
Length = 39
Score = 77.4 bits (189), Expect = 7e-15
Identities = 37/39 (94%), Positives = 38/39 (96%)
Query: 1 MTIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
MTIDRT+PIFTVRWLAVHGLAVPTV FLGSISAMQFIQR
Sbjct: 1 MTIDRTYPIFTVRWLAVHGLAVPTVFFLGSISAMQFIQR 39
>PSBF_ANTFO (P60249) Cytochrome b559 beta subunit (PSII reaction
center subunit VI)
Length = 39
Score = 77.4 bits (189), Expect = 7e-15
Identities = 37/39 (94%), Positives = 38/39 (96%)
Query: 1 MTIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
MTIDRT+PIFTVRWLAVHGLAVPTV FLGSISAMQFIQR
Sbjct: 1 MTIDRTYPIFTVRWLAVHGLAVPTVFFLGSISAMQFIQR 39
>PSBF_AMBTC (P60248) Cytochrome b559 beta subunit (PSII reaction
center subunit VI)
Length = 39
Score = 77.4 bits (189), Expect = 7e-15
Identities = 37/39 (94%), Positives = 38/39 (96%)
Query: 1 MTIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
MTIDRT+PIFTVRWLAVHGLAVPTV FLGSISAMQFIQR
Sbjct: 1 MTIDRTYPIFTVRWLAVHGLAVPTVFFLGSISAMQFIQR 39
>PSBF_PINTH (P41616) Cytochrome b559 beta subunit (PSII reaction
center subunit VI)
Length = 39
Score = 77.0 bits (188), Expect = 9e-15
Identities = 36/39 (92%), Positives = 38/39 (97%)
Query: 1 MTIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
MTIDRT+PIFTVRWLAVHGLA+PTV FLGSISAMQFIQR
Sbjct: 1 MTIDRTYPIFTVRWLAVHGLAIPTVFFLGSISAMQFIQR 39
>PSBF_CHAGL (P60251) Cytochrome b559 beta subunit (PSII reaction
center subunit VI)
Length = 39
Score = 77.0 bits (188), Expect = 9e-15
Identities = 36/39 (92%), Positives = 38/39 (97%)
Query: 1 MTIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
MTIDRT+PIFTVRWLA+HGLAVPTV FLGSISAMQFIQR
Sbjct: 1 MTIDRTYPIFTVRWLAIHGLAVPTVFFLGSISAMQFIQR 39
>PSBF_PSINU (Q8WI05) Cytochrome b559 beta subunit (PSII reaction
center subunit VI)
Length = 39
Score = 76.3 bits (186), Expect = 2e-14
Identities = 35/39 (89%), Positives = 38/39 (96%)
Query: 1 MTIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
MT+DRT+PIFTVRWLA+HGLAVPTV FLGSISAMQFIQR
Sbjct: 1 MTLDRTYPIFTVRWLAIHGLAVPTVFFLGSISAMQFIQR 39
>PSBF_MARPO (P06853) Cytochrome b559 beta subunit (PSII reaction
center subunit VI)
Length = 39
Score = 76.3 bits (186), Expect = 2e-14
Identities = 36/39 (92%), Positives = 38/39 (97%)
Query: 1 MTIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
MTIDRT+PIFTVRWLAVHGLAVPTV FLG+ISAMQFIQR
Sbjct: 1 MTIDRTYPIFTVRWLAVHGLAVPTVFFLGAISAMQFIQR 39
>PSBF_WHEAT (P60125) Cytochrome b559 beta subunit (PSII reaction
center subunit VI)
Length = 38
Score = 75.1 bits (183), Expect = 3e-14
Identities = 35/38 (92%), Positives = 37/38 (97%)
Query: 2 TIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
TIDRT+PIFTVRWLA+HGLAVPTV FLGSISAMQFIQR
Sbjct: 1 TIDRTYPIFTVRWLAIHGLAVPTVFFLGSISAMQFIQR 38
>PSBF_TOBAC (P60124) Cytochrome b559 beta subunit (PSII reaction
center subunit VI)
Length = 38
Score = 75.1 bits (183), Expect = 3e-14
Identities = 35/38 (92%), Positives = 37/38 (97%)
Query: 2 TIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
TIDRT+PIFTVRWLA+HGLAVPTV FLGSISAMQFIQR
Sbjct: 1 TIDRTYPIFTVRWLAIHGLAVPTVFFLGSISAMQFIQR 38
>PSBF_SPIOL (P60128) Cytochrome b559 beta subunit (PSII reaction
center subunit VI)
Length = 38
Score = 75.1 bits (183), Expect = 3e-14
Identities = 35/38 (92%), Positives = 37/38 (97%)
Query: 2 TIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
TIDRT+PIFTVRWLA+HGLAVPTV FLGSISAMQFIQR
Sbjct: 1 TIDRTYPIFTVRWLAIHGLAVPTVFFLGSISAMQFIQR 38
>PSBF_SECCE (P60127) Cytochrome b559 beta subunit (PSII reaction
center subunit VI)
Length = 38
Score = 75.1 bits (183), Expect = 3e-14
Identities = 35/38 (92%), Positives = 37/38 (97%)
Query: 2 TIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
TIDRT+PIFTVRWLA+HGLAVPTV FLGSISAMQFIQR
Sbjct: 1 TIDRTYPIFTVRWLAIHGLAVPTVFFLGSISAMQFIQR 38
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.335 0.142 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,580,924
Number of Sequences: 164201
Number of extensions: 59300
Number of successful extensions: 323
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 275
Number of HSP's gapped (non-prelim): 48
length of query: 39
length of database: 59,974,054
effective HSP length: 15
effective length of query: 24
effective length of database: 57,511,039
effective search space: 1380264936
effective search space used: 1380264936
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 59 (27.3 bits)
Description of BAB33212.1