TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BAB33212.1	39 aa
         (39 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BQ150497                                                               26  3.0
BG647239 similar to GP|6045193|dbj| cytochrome c oxidase subunit...    26  3.9

>BQ150497 
          Length = 344

 Score = 26.2 bits (56), Expect = 3.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 9   IFTVRWLAVHGLAVPTVSFL 28
           +FT RW+++H L +P V  +
Sbjct: 202 LFTTRWISIHILQIPDVGHI 143


>BG647239 similar to GP|6045193|dbj| cytochrome c oxidase subunit 1
           {Echinococcus multilocularis}, partial (5%)
          Length = 717

 Score = 25.8 bits (55), Expect = 3.9
 Identities = 14/36 (38%), Positives = 17/36 (46%)
 Frame = +3

Query: 1   MTIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQF 36
           +++DRTFP  T   L VH    P   F   IS   F
Sbjct: 87  LSLDRTFPPRTFHLLLVHH*TFPVTFFPEKISISTF 194


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.335    0.142    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,137,759
Number of Sequences: 36976
Number of extensions: 6478
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of query: 39
length of database: 9,014,727
effective HSP length: 15
effective length of query: 24
effective length of database: 8,460,087
effective search space: 203042088
effective search space used: 203042088
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 52 (24.6 bits)