TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BAB33212.1	39 aa
         (39 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NP459538 PSII cytochrome b559 [Lotus japonicus]                        81  5e-17
TC17126 similar to UP|Q9FGX6 (Q9FGX6) Gb|AAF36742.1, partial (64%)     24  6.0
TC9542 homologue to UP|CAMT_MEDSA (Q40313) Caffeoyl-CoA O-methyl...    24  7.8

>NP459538 PSII cytochrome b559 [Lotus japonicus]
          Length = 120

 Score = 80.9 bits (198), Expect = 5e-17
 Identities = 39/39 (100%), Positives = 39/39 (100%)
 Frame = +1

Query: 1  MTIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 39
          MTIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR
Sbjct: 1  MTIDRTFPIFTVRWLAVHGLAVPTVSFLGSISAMQFIQR 117


>TC17126 similar to UP|Q9FGX6 (Q9FGX6) Gb|AAF36742.1, partial (64%)
          Length = 773

 Score = 24.3 bits (51), Expect = 6.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 8   PIFTVRWLAVHGLAVPTVSFLGS 30
           PIF   + A H +AVP +S L S
Sbjct: 201 PIFGFDFFAKHLIAVPNISLLNS 133


>TC9542 homologue to UP|CAMT_MEDSA (Q40313) Caffeoyl-CoA
           O-methyltransferase  (Trans-caffeoyl-CoA
           3-O-methyltransferase) (CCoAMT) (CCoAOMT) , complete
          Length = 1012

 Score = 23.9 bits (50), Expect = 7.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 9   IFTVRWLAVHGLAVPTVSFL 28
           +F ++WL +  +  PT+SFL
Sbjct: 507 LFLMKWLKMRRIMGPTISFL 566


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.335    0.142    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 644,804
Number of Sequences: 28460
Number of extensions: 3754
Number of successful extensions: 36
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of query: 39
length of database: 4,897,600
effective HSP length: 15
effective length of query: 24
effective length of database: 4,470,700
effective search space: 107296800
effective search space used: 107296800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 49 (23.5 bits)