BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0369a.2
         (1602 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q84VH8 Gag-pol polyprotein [Glycine max]                    137  2e-30
UniRef100_O65147 Gag-pol polyprotein [Glycine max]                    137  4e-30
UniRef100_Q8S5D7 Putative gag-pol polyprotein [Oryza sativa]          135  1e-29
UniRef100_Q84VI4 Gag-pol polyprotein [Glycine max]                    134  2e-29
UniRef100_Q84VI2 Gag-pol polyprotein [Glycine max]                    134  3e-29
UniRef100_Q84MR5 Putative copia-type pol polyprotein [Oryza sativa]   134  3e-29
UniRef100_Q94GR9 Putative gag-pol polyprotein [Oryza sativa]          134  3e-29
UniRef100_Q6ATD3 Putative polyprotein [Oryza sativa]                  132  7e-29
UniRef100_Q84VH6 Gag-pol polyprotein [Glycine max]                    131  1e-28
UniRef100_Q94H19 Putative gag-pol polyprotein, 3'-partial [Oryza...   131  1e-28
UniRef100_Q9XEC0 Putative transposon protein [Arabidopsis thaliana]   131  2e-28
UniRef100_Q7XP45 OSJNBa0063G07.6 protein [Oryza sativa]               131  2e-28
UniRef100_Q8H8K3 Putative retroelement [Oryza sativa]                 130  3e-28
UniRef100_Q94HD2 Putative retroelement [Oryza sativa]                 130  3e-28
UniRef100_Q851U4 Putative copia-type retrotransposon protein [Or...   129  7e-28
UniRef100_Q7XS40 OSJNBa0069D17.3 protein [Oryza sativa]               129  7e-28
UniRef100_Q8LMY8 Putative polyprotein [Oryza sativa]                  129  1e-27
UniRef100_Q84VI0 Gag-pol polyprotein [Glycine max]                    129  1e-27
UniRef100_Q8H7T1 Putative Zea mays retrotransposon Opie-2 [Oryza...   127  3e-27
UniRef100_Q852C7 Putative gag-pol polyprotein [Oryza sativa]          127  3e-27

>UniRef100_Q84VH8 Gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  137 bits (346), Expect = 2e-30
 Identities = 117/445 (26%), Positives = 199/445 (44%), Gaps = 54/445 (12%)

Query: 3   SFFLGFDADLWDIIVDGYERP--VDTDGKKI----PRSEMTADQKKLYSQHHKARAILLS 56
           +F    D+  W  ++ G+E P  +DT+GK      P  + T ++ +L   + KA   L +
Sbjct: 30  AFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNALFN 89

Query: 57  AISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMF 116
            +    ++ I     AK  ++ LK++HEG  KVK S+   L  K+E+  M+  E I +  
Sbjct: 90  GVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFH 149

Query: 117 SRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISILK 176
                +      L +  T +  V +I+R LP+ +   VT+IE  +D+ NM ++ELI  L+
Sbjct: 150 MNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQ 209

Query: 177 CHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRL 236
             EL  S+  + K K++A  S  E            EE+E +  +++   + + L+ K+ 
Sbjct: 210 TFELGLSDRAEKKSKNLAFVSNDE-----------GEEDEYDLDTDEGLTNAVVLLGKQF 258

Query: 237 NRIWKHRQSKFKG-------SGRAKGKYES-SGQKKSSIKEVTCFECKESGHYKSDCPKL 288
           N++      + K          R   KY+  S  K S  K + C  C+  GH  ++CP  
Sbjct: 259 NKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKGIQCHGCEGYGHIIAECPTH 318

Query: 289 KKDKKPKKHFKTKKSLMVTFDESESE-DVDSDGEVQGLMAIVKDKGAESKEAVDSDSESE 347
            K        K +K L V   ++ESE + DSD +V  L  I +     ++++ D+DSE  
Sbjct: 319 LK--------KHRKGLSVCQSDTESEQESDSDRDVNALTGIFE----TAEDSSDTDSEIT 366

Query: 348 GDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKIIS 407
            D                EL  +   +  K   +L    +LKK ++ +      HE+ IS
Sbjct: 367 FD----------------ELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHEEEIS 410

Query: 408 DLKNENHALVNSNSVLKNQIAKLEE 432
           +LK E   L +    +K  I  L +
Sbjct: 411 ELKGEVGFLNSKLETMKKSIKMLNK 435


>UniRef100_O65147 Gag-pol polyprotein [Glycine max]
          Length = 1550

 Score =  137 bits (344), Expect = 4e-30
 Identities = 120/445 (26%), Positives = 201/445 (44%), Gaps = 58/445 (13%)

Query: 3   SFFLGFDADLWDIIVDGYERP--VDTDGKKI----PRSEMTADQKKLYSQHHKARAILLS 56
           +F    D+  W  ++ G+E P  +DT+GK      P  + T ++ +L   + KA   L +
Sbjct: 3   AFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNALFN 62

Query: 57  AISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMF 116
            +    ++ I     AK  ++ LK +HEG  KVK S+   L  K+E+  M+  E I E  
Sbjct: 63  GVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHEFH 122

Query: 117 SRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISILK 176
                +      L +  T +  V +I+R LP+ +   VT+IE  +D+ NM ++ELI  L+
Sbjct: 123 MNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQ 182

Query: 177 CHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRL 236
             EL  S+  + K K++A  S  E            EE+E +  +++   + + L+ K+ 
Sbjct: 183 TFELGLSDRTEKKSKNLAFVSNDE-----------GEEDEYDLDTDEGLTNAVVLLGKQF 231

Query: 237 NRIWKHRQSKFKGSGR------AKGK--YESSGQKKSSIKEVTCFECKESGHYKSDCPKL 288
           N++      + K   R       KG    + S +K S  K + C  C+  GH K++CP  
Sbjct: 232 NKVLNRMDRRQKPHVRNIPFDIRKGSEYQKRSDEKPSHSKGIQCHGCEGYGHIKAECPTH 291

Query: 289 KKDKKPKKHFKTKKSLMV-TFDESESE-DVDSDGEVQGLMAIVKDKGAESKEAVDSDSES 346
            K        K +K L V   D++ESE + DSD +V  L      +   ++++ D+DSE 
Sbjct: 292 LK--------KQRKGLSVCRSDDTESEQESDSDRDVNALTG----RFESAEDSSDTDSEI 339

Query: 347 EGDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKII 406
             D                EL  +  ++  K   +L    +LKK ++ +      HE  I
Sbjct: 340 TFD----------------ELAISYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEDEI 383

Query: 407 SDLKNENHALVNSNSVLKNQIAKLE 431
           S+LK E   L   NS L+N    ++
Sbjct: 384 SELKGEIGFL---NSKLENMTKSIK 405


>UniRef100_Q8S5D7 Putative gag-pol polyprotein [Oryza sativa]
          Length = 1627

 Score =  135 bits (340), Expect = 1e-29
 Identities = 117/441 (26%), Positives = 205/441 (45%), Gaps = 81/441 (18%)

Query: 49  KARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEP 108
           +A   L ++ S EE+ ++++ E A  I++ L   HEG  + K++K   L  +YE+F M P
Sbjct: 65  QAMNALFNSFSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETFSMLP 124

Query: 109 NESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSL 168
           +ES+ +M+ R  ++V  ++ L  +YT  +   +++R LP+ +  LVT + +  D+  M+ 
Sbjct: 125 HESVNDMYGRLNVIVNDLKGLGATYTDLEVAQKMLRALPKKYETLVTML-INSDMSRMTP 183

Query: 169 EELISILKCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEES-----EEASED 223
             L+      ++  ++M  LKKK +   S S+K       ALQAE E+       EA++D
Sbjct: 184 ASLLG-----KINTNDMYKLKKKEMEEASPSKKC-----IALQAEVEDKGKSKVNEANDD 233

Query: 224 SDEDELTLISKRLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKS 283
             E E+ L+++R N +   R+ + +GS   + +     +  S+++   CFEC E GH+ S
Sbjct: 234 LKE-EIALLARRFNDLLGRRKERVRGSNSNRRRNRRPNKTLSNLR---CFECGEKGHFAS 289

Query: 284 DCPKLKKD---------------KKPKKHFKTKKSLMVTFDESESEDVDSDGEVQG---- 324
            CP    D               KK KK  K  ++ +  +D +E     S  E +G    
Sbjct: 290 KCPSKDDDGDKSSKKKSGGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSEEEGGDDA 349

Query: 325 -----LMAIVKDKG-----------AESKEAVDSDSESEGDPNSDD-------------- 354
                 MA+V  K            A+    V S S+SE D + DD              
Sbjct: 350 SSKKKKMAVVVIKEAPTLFAPLCLMAKGSSKVTSLSDSESDDDCDDVSYDELVSMFEELH 409

Query: 355 ---ENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKIISDLKN 411
              E E+   F   ++ HA  +++  Y  L ++H++L  +   ++ + S    I      
Sbjct: 410 AYSEKEI-VKFKALKMDHASLEVL--YEELKTSHERLTISHKKLNSSSSSCVSIC----- 461

Query: 412 ENHALVNSNSVLKNQIAKLEE 432
            + +LV  N+ LK Q+AKL +
Sbjct: 462 -DASLVVENNELKEQVAKLNK 481


>UniRef100_Q84VI4 Gag-pol polyprotein [Glycine max]
          Length = 1574

 Score =  134 bits (338), Expect = 2e-29
 Identities = 117/444 (26%), Positives = 200/444 (44%), Gaps = 57/444 (12%)

Query: 3   SFFLGFDADLWDIIVDGYERP--VDTDGKKI----PRSEMTADQKKLYSQHHKARAILLS 56
           +F    D+  W  ++ G+E P  +DT+GK      P  + T ++ +L   + KA   L +
Sbjct: 30  AFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNALFN 89

Query: 57  AISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMF 116
            +    ++ I     AK  ++ LK++HEG  KVK S+   L  K+E+  M+  E I +  
Sbjct: 90  GVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKISRLQLLATKFENLKMKEEECIHDFH 149

Query: 117 SRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISILK 176
                +      L +  T +  V +I+R LP+ +   VT+IE  +D+ NM ++ELI  L+
Sbjct: 150 MNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQ 209

Query: 177 CHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRL 236
             EL  S+  + K K++A  S  E            EE+E +  +++   + + L+ K+ 
Sbjct: 210 TFELGLSDRAEKKSKNLAFVSNDE-----------GEEDEYDLNTDEGLTNAVVLLGKQF 258

Query: 237 NRIWKHRQSKFKG-------SGRAKGKYE-SSGQKKSSIKEVTCFECKESGHYKSDCPKL 288
           N++      + K          R   KY+  S  K S  K + C  C+  GH  ++CP  
Sbjct: 259 NKVLNRMDKRQKPHVQNIPFDIRKGSKYQKKSDVKPSHSKGIQCHGCEGYGHIIAECPTH 318

Query: 289 KKDKKPKKHFKTKKSLMVTFDESESE-DVDSDGEVQGLMAIVKDKGAESKEAVDSDSESE 347
            K        K +K L V   ++ESE + DSD +V  L  I +     ++++ D+DSE  
Sbjct: 319 LK--------KHRKGLSVCQSDTESEQESDSDRDVNALTGIFE----TAEDSSDTDSEIT 366

Query: 348 GDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKIIS 407
            D                EL  +   +  K   +L    +LKK ++ +      H++ IS
Sbjct: 367 FD----------------ELATSYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEEIS 410

Query: 408 DLKNENHALVNSNSVLKNQIAKLE 431
           +LK E   L   NS L+N    ++
Sbjct: 411 ELKGEVGFL---NSKLENMTKSIK 431


>UniRef100_Q84VI2 Gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  134 bits (336), Expect = 3e-29
 Identities = 117/444 (26%), Positives = 199/444 (44%), Gaps = 57/444 (12%)

Query: 3   SFFLGFDADLWDIIVDGYERP--VDTDGKKI----PRSEMTADQKKLYSQHHKARAILLS 56
           +F    D+  W  ++ G+E P  +DT+GK      P  + T ++ +L   + KA   L +
Sbjct: 30  AFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNALFN 89

Query: 57  AISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMF 116
            +    ++ I     AK   + LK +HEG  KVK S+   L  K+E+  M+  E I +  
Sbjct: 90  GVDKNIFRLINTCTVAKDACEILKSTHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFH 149

Query: 117 SRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISILK 176
                +      L +  T +  V +I+R LP+ +   VT+IE  +D+ NM ++ELI  L+
Sbjct: 150 MNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQ 209

Query: 177 CHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRL 236
             EL  S+  + K K++A  S  E            EE+E +  +++   + + L+ K+ 
Sbjct: 210 TFELGLSDRAEKKSKNLAFVSNDE-----------GEEDEYDLDTDEGLTNAVVLLGKQF 258

Query: 237 NRIWKHRQSKFKG-------SGRAKGKYES-SGQKKSSIKEVTCFECKESGHYKSDCPKL 288
           N++      + K          R   KY+  S  K S  K + C  C+  GH  ++CP  
Sbjct: 259 NKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKGIQCHGCEGYGHIIAECPTH 318

Query: 289 KKDKKPKKHFKTKKSLMVTFDESESE-DVDSDGEVQGLMAIVKDKGAESKEAVDSDSESE 347
            K        K +K L V   ++ESE + DSD +V  L+ I +     ++++ D+DSE  
Sbjct: 319 LK--------KHRKGLSVCQSDTESEQESDSDRDVNALIGIFE----TAEDSSDTDSEIT 366

Query: 348 GDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKIIS 407
            D                EL  +   +  K   +L    +LKK ++ +      H++ IS
Sbjct: 367 FD----------------ELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEEIS 410

Query: 408 DLKNENHALVNSNSVLKNQIAKLE 431
           +LK E   L   NS L+N    ++
Sbjct: 411 ELKGEVGFL---NSKLENMTKSIK 431


>UniRef100_Q84MR5 Putative copia-type pol polyprotein [Oryza sativa]
          Length = 1896

 Score =  134 bits (336), Expect = 3e-29
 Identities = 124/488 (25%), Positives = 228/488 (46%), Gaps = 90/488 (18%)

Query: 12  LWDIIVDGYERPVDTDGKKIPRSEMTADQKKLYSQHHKARAILLSAISYEEYQKITDREF 71
           +W ++  G + P D         E+T++Q++L  ++ +    +LSA+S EE+ K+   E 
Sbjct: 77  IWKVVCTGIDVPHDD-------MELTSEQEQLIHRNDQVSNAILSALSPEEFNKVDRLEE 129

Query: 72  AKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLNK 131
           AK I+D+L+++HEG+  V+E+K   L  +   F+M+  E+ +EM+ R  +LV  I+ L  
Sbjct: 130 AKAIWDTLQLAHEGSPAVREAKIELLEGRLGRFVMDDKETPQEMYDRMMILVNKIKGLGS 189

Query: 132 SYTTKDHVI-RIIRCLPESWMPLVTSIELTRDVENMSLEELISILKCHELKRSEMQDLKK 190
              T   V+ R++R        LV+ I   +D + ++  +++  +  HE++  E +++++
Sbjct: 190 EDMTNHFVVKRLLRAFGPRNPTLVSMIHERKDFKRLTPSDILGRIVSHEMQEEEAREVRQ 249

Query: 191 --KSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRLNRIWKHRQSKFK 248
             K+ A+    E        AL+A++EE E + E+S ++E+ LI KR    +KH     +
Sbjct: 250 MVKNAAMIKNQE-------VALKAKQEE-ESSCEESKDEEMALIVKR----FKH---FLR 294

Query: 249 GSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKLKK------DKKPK-KHFKTK 301
            SG  K + +    K+ S +   CF C E GH+ +DCPK  +       KKP+  H    
Sbjct: 295 RSGYGKERKDDDKGKRQSKR--ACFNCGEYGHFIADCPKTNEAKGKGGKKKPECAHVAEA 352

Query: 302 KSLMVTFDESE-------SEDVDSDGEVQGLMAIVKDKGAESKEAV----------DSDS 344
               V + E E        + V+ +G   G+  +     + SKE +          D+D 
Sbjct: 353 HMAEVWYSEDEEDPKPKPKDKVEGEG---GVATVAFKSSSSSKERLFMAQGHNLSDDNDD 409

Query: 345 E---------------------SEGDPNSDDE-----NEVFASFSTSELKH--ALSDIMD 376
                                 S  D +SD+E     ++V  SFS   ++H   L   +D
Sbjct: 410 SYHYSCFMAQGRKVMTQKLSHTSLNDDSSDEESDNELDDVLKSFSKPAMQHLAKLMRALD 469

Query: 377 KYNSLLSTHKKL-----KKNLS---AVSKTPSEHEKIISDLKNENHALVNSNSVLKNQIA 428
                L   ++L     K+NL+   +++K  +++E++ +DL   N +L +   V +N   
Sbjct: 470 SKEQSLERQEELLILEKKRNLALEESLAKECAKNEQLANDLNLANGSLASLRDVNENLQE 529

Query: 429 KLEEIVAC 436
           K   +  C
Sbjct: 530 KFANLDKC 537


>UniRef100_Q94GR9 Putative gag-pol polyprotein [Oryza sativa]
          Length = 1700

 Score =  134 bits (336), Expect = 3e-29
 Identities = 108/418 (25%), Positives = 192/418 (45%), Gaps = 68/418 (16%)

Query: 49  KARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEP 108
           +A   L +++S EE+ ++++ E A  I++ L   HEG  + K++K   L  +YE+F M P
Sbjct: 65  QAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETFSMLP 124

Query: 109 NESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSL 168
           +ES+ +M+ R  ++V  ++ L  +YT  +   +++R LPE +   VT + +  D+  M+ 
Sbjct: 125 HESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETFVTML-INSDMSRMTP 183

Query: 169 EELISILKCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDE 228
             L+      ++  ++M  LKKK I   S S+K    +++     + +  E +ED  E+E
Sbjct: 184 ASLLG-----KINTNDMYKLKKKEIEEASPSKKCIALQAEVEDQSKSKVNEVNEDL-EEE 237

Query: 229 LTLISKRLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKL 288
           + L+++R N +   R+ + +GS   + K     +  S+++   CFEC E GH+ S CP  
Sbjct: 238 MVLLARRFNDLLGRRKERGRGSNSNRRKNRRPNKTLSNLR---CFECGEKGHFASKCPSK 294

Query: 289 KKD---------------KKPKKHFKTKKSLMVTFDESESEDVDSDGEVQG--------- 324
             D               KK KK  K  ++ +  +D +E     S  E +G         
Sbjct: 295 DDDGDKSSKKKSGGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSEEEGGDDASSKKK 354

Query: 325 LMAIVKDKGAES-----------KEAVDSDSESEGDPNSDD-----------------EN 356
            MA+V  K A S              V S S+SE D + DD                 E 
Sbjct: 355 KMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCDDVSYDELVSMFEELHTYSEK 414

Query: 357 EVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKIISDLKNENH 414
           E+   F   +  HA  +++  Y  L +TH++L     +  K    H+ ++S  ++  H
Sbjct: 415 EI-VKFKALKKDHASLEVL--YEELKTTHERL---TISHEKLKEAHDNLLSTTQHGAH 466


>UniRef100_Q6ATD3 Putative polyprotein [Oryza sativa]
          Length = 1362

 Score =  132 bits (333), Expect = 7e-29
 Identities = 121/487 (24%), Positives = 228/487 (45%), Gaps = 93/487 (19%)

Query: 12  LWDIIVDGYERPVDTDGKKIPRSEMTADQKKLYSQHHKARAILLSAISYEEYQKITDREF 71
           +W ++  G + P D         E+T++Q++L  ++ +A   +LSA+S EE+ K+   E 
Sbjct: 78  IWKVVCTGVDVPHDD-------MELTSEQEQLIHRNAQASNAILSALSPEEFNKVDGLEE 130

Query: 72  AKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLNK 131
           AK I+D+L+++HEG+  V+E+K   L  +   F+M   E+ +EM+ R  +LV  I+ L  
Sbjct: 131 AKEIWDTLQLAHEGSPAVREAKIELLEGRLGRFVMGDKETPQEMYDRMMILVNKIKGLGS 190

Query: 132 SYTTKDHVI-RIIRCLPESWMPLVTSIELTRDVENMSLEELISILKCHELKRSEMQDLKK 190
              T   V+ R++R        LV+ I   +D + ++  +++  +  HE++  E +++++
Sbjct: 191 EDMTNHFVVKRLLRAFGPRNPTLVSMIRERKDFKRLTPSDILGRIVSHEMQEEEAREVRQ 250

Query: 191 --KSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRLNRIWKHRQSKFK 248
             K+ A+    E        AL+A++EE E + E+S+++E+  I KR    +KH   K  
Sbjct: 251 MVKNAAMIKNQE-------IALKAKQEE-ESSCEESEDEEMAFIVKR----FKHFLRK-- 296

Query: 249 GSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKLKK------DKKPKKHFKTKK 302
            SG  KG+ +    K+ S +   CF C E GH+ +DCPK  +       KKP++    + 
Sbjct: 297 -SGYGKGRKDDDKGKRQSKR--ACFNCGEYGHFIADCPKSNEAKAKGGKKKPERAHVAEA 353

Query: 303 SLMVTFDESESED------------VDSDGEVQGLMAIVKDKGAESKEAV-----DSDSE 345
            +   +   + ED            V+ +G   G+  +     + SKE +     D D +
Sbjct: 354 HMAEVWYSRDEEDPEVKPKPKPKDKVEGEG---GVATVAFKSSSSSKERLFNNLSDDDDD 410

Query: 346 S--------------------------EGDPNSDDE-NEVFASFSTSELKH--------- 369
           S                            D  SD+E ++V  SFS   ++H         
Sbjct: 411 SYHYSCFMAQGRKVMTQKPSHTSLDVDSSDEESDNELDDVLKSFSKPAMQHLAKLMRALY 470

Query: 370 ALSDIMDKYNSLLSTHKKLKKNL-SAVSKTPSEHEKIISDLKNENHALV---NSNSVLKN 425
           +    +++   LL   KK    L  +++K  +++E++ ++L   N +L    + N  L+ 
Sbjct: 471 SKEQSLERQEELLILEKKRNLALEESLAKECAKNEQLANELNLANGSLASLRDVNETLQE 530

Query: 426 QIAKLEE 432
           + A L++
Sbjct: 531 KFASLDK 537


>UniRef100_Q84VH6 Gag-pol polyprotein [Glycine max]
          Length = 1577

 Score =  131 bits (330), Expect = 1e-28
 Identities = 118/445 (26%), Positives = 198/445 (43%), Gaps = 58/445 (13%)

Query: 3   SFFLGFDADLWDIIVDGYERP--VDTDGKKI----PRSEMTADQKKLYSQHHKARAILLS 56
           +F    D+  W  ++ G+E P  +DT+GK      P  + T ++ +L   + KA   L +
Sbjct: 30  AFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNALFN 89

Query: 57  AISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMF 116
            +    ++ I     AK  ++ LK +HEG  KVK S+   L  K+E+  M+  E I +  
Sbjct: 90  GVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFH 149

Query: 117 SRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISILK 176
                +      L +  T +  V +I+R LP+ +   VT+IE  +D+ NM ++ELI  L+
Sbjct: 150 MTILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQ 209

Query: 177 CHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRL 236
             EL  S+  + K K++A  S  E            EE+E +  +++   + +  + K+ 
Sbjct: 210 TFELGLSDRTEKKSKNLAFVSNDE-----------GEEDEYDLDTDEGLTNAVVFLGKQF 258

Query: 237 NRIWKHRQSKFKGSGR------AKGK--YESSGQKKSSIKEVTCFECKESGHYKSDCPKL 288
           N++      + K   R       KG      S +K S  K + C  C+  GH K++CP  
Sbjct: 259 NKVLNRMDRRQKPHVRNISLDIRKGSEYQRKSDEKPSHSKGIQCRGCEGYGHIKAECPTH 318

Query: 289 KKDKKPKKHFKTKKSLMV-TFDESESE-DVDSDGEVQGLMAIVKDKGAESKEAVDSDSES 346
            K        K +K L V   D++ESE + DSD +V  L      +   ++++ D+DSE 
Sbjct: 319 LK--------KQRKGLSVCRSDDTESEQESDSDRDVNALTG----RFESAEDSSDTDSEI 366

Query: 347 EGDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKII 406
             D                EL     ++  K   +L    +LKK ++ +      HE+ I
Sbjct: 367 TFD----------------ELAIFYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEEEI 410

Query: 407 SDLKNENHALVNSNSVLKNQIAKLE 431
           S LK E   L   NS L+N    ++
Sbjct: 411 SKLKGEVGFL---NSKLENMTKSIK 432


>UniRef100_Q94H19 Putative gag-pol polyprotein, 3'-partial [Oryza sativa]
          Length = 1074

 Score =  131 bits (330), Expect = 1e-28
 Identities = 120/479 (25%), Positives = 214/479 (44%), Gaps = 86/479 (17%)

Query: 12  LWDIIVDGY--ERPVDTDGKKIPRSEMTADQKKLYSQHHKARAILLSAISYEEYQKITDR 69
           +W I+  GY  ++P D      P  E   ++ K    + +A  ++LSA+S  E+ ++ D 
Sbjct: 62  IWRIVEKGYVLQKPED------PTKEDDENEHK----NAQAANVILSALSGSEFNRVDDI 111

Query: 70  EFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPL 129
           E AK I+D+L+  HEG   V+ESK   L  ++E F+M   ES  +M+     +V  I+ L
Sbjct: 112 ESAKVIWDTLRNLHEGTDSVRESKVEILKGQFERFVMLDGESPSDMYDHLSKIVNEIKGL 171

Query: 130 NKSYTTKDHVI-RIIRCLPESWMPLVTSIELTRDVENMSLEELISILKCHE--------- 179
                T + V+ +++R +      LVT I    D + ++  +L+  +  H+         
Sbjct: 172 GSKDMTDEVVVKKMVRAITLRNSTLVTIIRERPDYKTLTPHDLLGRILAHDMLVQESKEV 231

Query: 180 ---LKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRL 236
              + +S    +KK+ +ALK+K E+ +  KSK           + E+ D++E+TL  K+ 
Sbjct: 232 IQYINQSSTTSIKKEDLALKAKEEEEESRKSK-----------SKEEIDDEEMTLFVKKF 280

Query: 237 NRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKL-------- 288
            +  + R   FKGS       + SG+  + +    C+ CKE GH+ +DCP L        
Sbjct: 281 GKFMR-RSGFFKGSSSKHHSNKLSGRHSARV----CYVCKEPGHFIADCPYLKDGSHIKE 335

Query: 289 -----KKDKKPKKHFKTKK---------SLMVTFDESESEDVD----------------- 317
                KKD+K +KH  +K+          +  +  ES S D +                 
Sbjct: 336 DKMGEKKDEKKEKHKHSKRERYGQAHLGKIFGSDSESSSSDEEGIATFAVKPSSPPRLFN 395

Query: 318 --SDGEVQGLMAIVKDKGAESKEAVDSDSESEGDPNSDDE---NEVFASFSTSELKHALS 372
             SD +    +   + K   S ++ + D  S+ + + +DE    E+F S +   L H LS
Sbjct: 396 YSSDEDAPICLMAKEPKVPSSLKSFNVDLVSDEEDDVEDEVMDEELFKSITKESLPH-LS 454

Query: 373 DIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKIISDLKNENHALVNSNSVLKNQIAKLE 431
           +++ +     +T ++ +  L    +   E +  ++  + +N ALV      K   A LE
Sbjct: 455 ELLGRIEDQYATLERQEALLIREKERSHELKGELAKEREKNEALVRLYKQTKESHANLE 513


>UniRef100_Q9XEC0 Putative transposon protein [Arabidopsis thaliana]
          Length = 1008

 Score =  131 bits (329), Expect = 2e-28
 Identities = 115/503 (22%), Positives = 228/503 (44%), Gaps = 66/503 (13%)

Query: 1   LESFFLGFDADLWDIIVDGYERPV--DTDGKKIPRSE---MTADQKKLYSQHHKARAILL 55
           + +   G   + W     G++ PV    DG+ + +++     A++ K  + + +A +++ 
Sbjct: 28  MRALIRGLGKEAWIATSIGWKAPVIKGEDGEDVLKTKDQWNDAEEAKAKA-NSRALSLIF 86

Query: 56  SAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEM 115
           + ++  ++++I + E AK  +D L  ++EG   VK S+   L  ++E+  ME  E+IEE 
Sbjct: 87  NFVNQNQFKRIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLASQFENLSMEETENIEEF 146

Query: 116 FSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISIL 175
             +   + +    L K Y  K  V +++RCLP  +    T++  + D +++  EE++ +L
Sbjct: 147 SGKISAIASEAHNLGKKYKDKKLVKKLLRCLPSRFESKRTAMGTSLDTDSIDFEEVVGML 206

Query: 176 KCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKR 235
           + +EL+ +  +    K +AL + ++K ++++ K                  D +++++K 
Sbjct: 207 QAYELEITSGKGGYSKGLALAASAKKNEIQELK------------------DTMSMMAKD 248

Query: 236 LNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKLK-KDKKP 294
            +R  +  + K  G  +   +Y     K+    E+ C EC+  GH K++CP LK KD K 
Sbjct: 249 FSRAMRRVEKKGFGRNQGTDRYRDRSSKRD---EIQCHECQGYGHIKAECPSLKRKDLKC 305

Query: 295 KK--------------HFKTKKSLMVTFDESESEDVDSDGEVQGLMAIV-----KDKGAE 335
            +                K  KS   +  ES+S D DS+  ++G ++ V     KD+ ++
Sbjct: 306 SECNGLGHTKFDCVGSKSKPDKSCS-SESESDSNDGDSEDYIKGFVSFVGIIEEKDESSD 364

Query: 336 SKEAVDSDSESEGDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAV 395
           S EA   D ++  D +SD E +V              +I +++  L  +   L K   A 
Sbjct: 365 S-EADGEDEDNSADEDSDIEKDV--------------NINEEFRKLYDSWLMLSKEKVAW 409

Query: 396 SKTPSEHEKIISDLKNENHALVNSNSVLKNQIAKLEE---IVACDASDCRNESKYEKSFQ 452
            +   + +++   LK E  A    NS L  + +  EE    ++ + SD R       S  
Sbjct: 410 LEEKLKVQELTEKLKGELTAANQKNSELIQKCSVAEEKNRELSQELSDTRKNIHMLNSGT 469

Query: 453 RFLAKSVDRSLMASMIYGVSRNG 475
           + L   +    +    +G+  NG
Sbjct: 470 KDLDSILAAGRVGKSNFGLGYNG 492


>UniRef100_Q7XP45 OSJNBa0063G07.6 protein [Oryza sativa]
          Length = 1539

 Score =  131 bits (329), Expect = 2e-28
 Identities = 115/433 (26%), Positives = 205/433 (46%), Gaps = 63/433 (14%)

Query: 49  KARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEP 108
           +A   L +++S EE+ ++++ E A  I++ L   HEG  + K++K   L  +YE+F M P
Sbjct: 65  QAMNALFNSLSQEEFDRVSNLETAYEIWNKLAKIHEGTSEYKDAKLHFLKIQYETFSMLP 124

Query: 109 NESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSL 168
           +ES+ +M+ R  ++V  ++ L  +YT  +   +++R LPE +  LVT + +  D+  M+ 
Sbjct: 125 HESVNDMYGRLNVIVNDLKGLGANYTDLEVAKKMLRALPEKYETLVTML-INSDMSRMTP 183

Query: 169 EELISILKCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSD--E 226
             L+      ++  ++M  LKKK +   S S+K       ALQAE E+  + ++ +   E
Sbjct: 184 ASLLG-----KINTNDMYKLKKKEMEEASPSKKC-----IALQAEVEDKGKVNDVNKNLE 233

Query: 227 DELTLISKRLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCP 286
           +E+ L+++R N     R+ + KGS   + + +   +  S+++   CFEC E GH+ S CP
Sbjct: 234 EEIALLARRFNDFLGRRKERGKGSNSNRRRNKRPNKTLSNLR---CFECGEKGHFASKCP 290

Query: 287 KLKKD---------------KKPKKHFKTKKSLMVTFDESE---------SEDVDSDGEV 322
               D               KK KK  K  ++ +  +D +E          ED D     
Sbjct: 291 SKDDDGDKSSKKKSGGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSKEEDGDDASSK 350

Query: 323 QGLMAIVKDKGA-------------ESKEAVDSDSESEGDPNSDDENEVFASFSTSELKH 369
           +  MA+V  K A              SK    SDSES+ D +    +E+ + F   E  H
Sbjct: 351 KKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCDDISYDELVSMF---EELH 407

Query: 370 ALSD-IMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKIISDLKNENHALVNSNSVLKNQIA 428
           A S+  + K+ +L   H  L+       +  + HE++   + +E     + N +   Q  
Sbjct: 408 AYSEKEIVKFKALKKDHASLE---VLYEELKTSHERL--TISHEKLKEAHDNLLSTTQHG 462

Query: 429 KLEEI-VACDASD 440
            L ++ ++CD  D
Sbjct: 463 ALIDVGISCDLLD 475


>UniRef100_Q8H8K3 Putative retroelement [Oryza sativa]
          Length = 1299

 Score =  130 bits (328), Expect = 3e-28
 Identities = 110/403 (27%), Positives = 191/403 (47%), Gaps = 50/403 (12%)

Query: 49  KARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEP 108
           +A   L +++S EE+ ++++ E A  I++ L   HEG  + K++K   L  +YE+F M P
Sbjct: 31  QAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETFSMLP 90

Query: 109 NESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSL 168
           +ES+ +M+ R  ++V  ++ L  +YT  +   +++R LPE +  LVT + +  D+  M+ 
Sbjct: 91  HESVNDMYGRLNVIVNDLKGLGANYTDLEIAQKMLRALPEKYETLVTML-INSDMSRMTP 149

Query: 169 EELISILKCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDE 228
             L+      ++  ++M  LKKK +   S S+K    +++     + +  EA+ED  E+E
Sbjct: 150 ASLLG-----KINTNDMYKLKKKEMEEASPSKKCIALQTEVEDKGKGKVNEANEDL-EEE 203

Query: 229 LTLISKRLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKL 288
           + L+++R N +   ++ + +GS   + +     +  S+++   CFEC E GH+ S CP  
Sbjct: 204 IALLARRFNDLLGRKKERGRGSNSNRRRNRRPNKTLSNLR---CFECGEKGHFASKCPSK 260

Query: 289 KKD---------------KKPKKHFKTKKSLMVTFDESESEDVDSDGEVQG--------- 324
             D               KK KK  K  ++ +  +D ++     S  E +G         
Sbjct: 261 DDDGDKSSKKKSGGYKLMKKLKKEGKKIEAFIGEWDSNKESSASSGSEEEGGDDASSKKK 320

Query: 325 LMAIVKDKGAES-----------KEAVDSDSESEGDPNSDDENEVFASF-STSELKHALS 372
            MA+V  K A S              V S S+SE D + DD +  +  F S  E  HA S
Sbjct: 321 KMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCDDVS--YDEFVSMFEELHAYS 378

Query: 373 D-IMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKIISDLKNENH 414
           +  + K+ +L   H  LK  L    KT  E   I  +   E H
Sbjct: 379 EKEIVKFKALKKNHASLKV-LYEELKTSHERLTISHEKLKETH 420


>UniRef100_Q94HD2 Putative retroelement [Oryza sativa]
          Length = 1131

 Score =  130 bits (328), Expect = 3e-28
 Identities = 110/403 (27%), Positives = 191/403 (47%), Gaps = 50/403 (12%)

Query: 49  KARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEP 108
           +A   L +++S EE+ ++++ E A  I++ L   HEG  + K++K   L  +YE+F M P
Sbjct: 85  QAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETFSMLP 144

Query: 109 NESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSL 168
           +ES+ +M+ R  ++V  ++ L  +YT  +   +++R LPE +  LVT + +  D+  M+ 
Sbjct: 145 HESVNDMYGRLNVIVNDLKGLGANYTDLEIAQKMLRALPEKYETLVTML-INSDMSRMTP 203

Query: 169 EELISILKCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDE 228
             L+      ++  ++M  LKKK +   S S+K    +++     + +  EA+ED  E+E
Sbjct: 204 ASLLG-----KINTNDMYKLKKKEMEEASPSKKCIALQTEVEDKGKGKVNEANEDL-EEE 257

Query: 229 LTLISKRLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKL 288
           + L+++R N +   ++ + +GS   + +     +  S+++   CFEC E GH+ S CP  
Sbjct: 258 IALLARRFNDLLGRKKERGRGSNSNRRRNRRPNKTLSNLR---CFECGEKGHFASKCPSK 314

Query: 289 KKD---------------KKPKKHFKTKKSLMVTFDESESEDVDSDGEVQG--------- 324
             D               KK KK  K  ++ +  +D ++     S  E +G         
Sbjct: 315 DDDGDKSSKKKSGGYKLMKKLKKEGKKIEAFIGEWDSNKESSASSGSEEEGGDDASSKKK 374

Query: 325 LMAIVKDKGAES-----------KEAVDSDSESEGDPNSDDENEVFASF-STSELKHALS 372
            MA+V  K A S              V S S+SE D + DD +  +  F S  E  HA S
Sbjct: 375 KMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCDDVS--YDEFVSMFEELHAYS 432

Query: 373 D-IMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKIISDLKNENH 414
           +  + K+ +L   H  LK  L    KT  E   I  +   E H
Sbjct: 433 EKEIVKFKALKKNHASLKV-LYEELKTSHERLTISHEKLKETH 474


>UniRef100_Q851U4 Putative copia-type retrotransposon protein [Oryza sativa]
          Length = 1183

 Score =  129 bits (324), Expect = 7e-28
 Identities = 104/404 (25%), Positives = 196/404 (47%), Gaps = 38/404 (9%)

Query: 49  KARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEP 108
           +A   L +++S EE+ ++++ E    I++ L   HEG  + K++K   L  +YE+F M P
Sbjct: 65  QAMNALFNSLSQEEFDRVSNLESTYEIWNKLAEIHEGTSEYKDAKLHFLEIQYETFSMLP 124

Query: 109 NESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSL 168
           +ES+ +M+ R  ++V  ++ L  +Y   +   +++R LPE +  LVT + +  D+  M+L
Sbjct: 125 HESVNDMYGRLNVIVNDLKGLGANYNVLEVAQKMLRALPEKYETLVTML-INSDMSRMTL 183

Query: 169 EELISILKCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDE 228
             L+      ++  ++M  LKKK +   S S+K  V +++     + +  EA+ED  E+E
Sbjct: 184 ASLLG-----KINTNDMYKLKKKEMEEASPSKKCIVLQAEVEDKGKGKVNEANEDL-EEE 237

Query: 229 LTLISKRLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKL 288
           + L+++R N +   R+ + +GS   + +     +  S+++   CFEC E GH+ S CP  
Sbjct: 238 IVLLARRFNDLLGRRKERRRGSNSNRRRNRRPNKTLSNLR---CFECGEKGHFASKCPSK 294

Query: 289 KKDKKPKKHFKTKKSLMVTFDESESEDVDSDGEVQGLMAIVKDKG--------AESKEAV 340
             D           S     +E   +D  S  +   ++AI +           A+    V
Sbjct: 295 DDD--------ADNSASSGSEEEGGDDASSKKKKMAVVAIKEAPSLFAPLCLMAKGSSKV 346

Query: 341 DSDSESEGDPNSDD--ENEVFASFSTSELKHALSD-IMDKYNSLLSTHKKLKKNLSAVSK 397
            S S+SE D + DD   +E+ + F   E  HA S+  + K+ +L   H  L+       +
Sbjct: 347 TSLSDSESDDDCDDVFYDELVSMF---EELHAYSEKEIVKFKALKKDHASLE---VLYEE 400

Query: 398 TPSEHEKIISDLKNENHALVNSNSVLKNQIAKLEEI-VACDASD 440
             + HE++   + +E     + N +   Q   L ++ ++CD  D
Sbjct: 401 LKTSHERL--TISHEKLKEAHDNLLSTTQHGALIDVGISCDLLD 442


>UniRef100_Q7XS40 OSJNBa0069D17.3 protein [Oryza sativa]
          Length = 1156

 Score =  129 bits (324), Expect = 7e-28
 Identities = 121/463 (26%), Positives = 218/463 (46%), Gaps = 83/463 (17%)

Query: 35  EMTADQKKLYSQHHKARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKA 94
           E+T++Q++L  ++ +A   +LSA+S EE+ K+   E AK I+D+L+++HEG+  V+E+K 
Sbjct: 2   ELTSEQEQLIHRNAQASKAILSALSPEEFNKVDGLEEAKEIWDTLQLAHEGSPAVREAKI 61

Query: 95  LSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVI-RIIRCLPESWMPL 153
             L  +   F+M+  E+ +EM+ R  +LV  I+ L     T   V+ R++R        L
Sbjct: 62  ELLEGRLGRFVMDDKETPQEMYDRMMILVNKIKGLGSEDMTNHFVVKRLLRAFGPRNPTL 121

Query: 154 VTSIELTRDVENMSLEELISILKCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAE 213
           V+ I   +D + ++  +++  +  HE++  E +++++       K+      +  AL+A 
Sbjct: 122 VSMIRERKDFKRLTPNDILGSIVSHEMQEEEAREVRQ-----MVKNAPMIKNQEVALKAN 176

Query: 214 EEESEEASEDSDEDELTLISKRLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCF 273
           +EE E + E+S+++EL  I KR    +KH   K   SG  KG+ +    K+ S +   CF
Sbjct: 177 QEE-ESSCEESEDEELAFIVKR----FKHFLRK---SGYGKGRKDDDKGKRQSKR--ACF 226

Query: 274 ECKESGHYKSDCPKLKK------DKKPKK-HFKTKKSLMVTFDESE-----------SED 315
            C E GH+ +DCP+  +       KKPK+ H        V +   E            + 
Sbjct: 227 NCGEYGHFIADCPRSNEAKAKGGKKKPKRAHVAEAHMAEVWYSGDEEYPEVKPKPKSKDK 286

Query: 316 VDSDGEVQGLMAIVKDKGAESKEAV-----DSDSES------------------------ 346
           V+ +G   G+  I     + SKE +     D D +S                        
Sbjct: 287 VEGEG---GVATIAFKSSSSSKERLFNNLSDDDDDSYHYSCFMAQGRKVMTQKPSHTSLD 343

Query: 347 --EGDPNSDDE-NEVFASFSTSELKH--ALSDIMDKYNSLLSTHKKL-----KKNL---S 393
               D  SD+E ++V  S S   ++H   L   +D     L   ++L     K+NL    
Sbjct: 344 VDSSDEESDNELDDVLKSLSKPTMQHLAKLMRALDSKEQSLERQEELLILEKKRNLDLEE 403

Query: 394 AVSKTPSEHEKIISDLKNENHALVNSNSVLKNQIAKLEEIVAC 436
           +++K  +++E++ +DL   N +L +    L++    L+E  AC
Sbjct: 404 SLAKECAKNEQLANDLNLANGSLAS----LRDVNETLQEKFAC 442


>UniRef100_Q8LMY8 Putative polyprotein [Oryza sativa]
          Length = 1584

 Score =  129 bits (323), Expect = 1e-27
 Identities = 107/448 (23%), Positives = 201/448 (43%), Gaps = 68/448 (15%)

Query: 12  LWDIIVDGYERPVDTDGKKIPRSEMTADQKKLYSQHHKARAILLSAISYEEYQKITDREF 71
           +W I+  G+          I  + +T    +    + +A   L +++S EE+ ++++ E 
Sbjct: 37  IWSIVYVGFA---------ITGTPLTEIDHRNLQLNAQAMNALFNSLSQEEFDRVSNLET 87

Query: 72  AKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLNK 131
           A  I++ L   HEG  + K++K   L  +YE+F M P+ES+ +M+ R  ++V  ++ L  
Sbjct: 88  AYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETFYMLPHESVNDMYGRLNVIVNDLKGLGA 147

Query: 132 SYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISILKCHELKRSEMQDLKKK 191
           +YT  +   +++R LPE +  LVT + +  D+  M+   L+      ++  ++M  LKKK
Sbjct: 148 NYTDLEVAQKMLRALPEKYETLVTML-INSDMSRMTPASLLG-----KINTNDMYKLKKK 201

Query: 192 SIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRLNRIWKHRQSKFKGSG 251
            +   S S+K    +++     + +  E +ED  E+E+ L+++R N + + R+ + +GS 
Sbjct: 202 EMEEASPSKKCIALQAEVEDKSKSKVNEVNEDL-EEEMILLARRFNDLLERRKERGRGSN 260

Query: 252 RAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKLKKD---------------KKPKK 296
             + +     +  S+++   CFE  E GH+ S CP    D               KK KK
Sbjct: 261 SNRRRNRRLNKTLSNLR---CFEYGEKGHFASKCPSKDDDGDKSSKKKSGGYKLMKKLKK 317

Query: 297 HFKTKKSLMVTFDESESEDVDSDGEVQG---------LMAIVKDKGAES----------- 336
             K  ++ +  +D +E     S  E +G          M +V  K A S           
Sbjct: 318 EGKKIEAFIGEWDSNEESSASSGSEEEGGDDASSKKKKMVVVAIKEAPSLFAPLCLMAKG 377

Query: 337 KEAVDSDSESEGDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVS 396
              V S S+SE D + DD               +  +++  +  L +  +K      A++
Sbjct: 378 SSKVTSLSDSESDDDCDDV--------------SYEELVSMFEELHAYSEKEIVKFKALN 423

Query: 397 KTPSEHEKIISDLKNENHALVNSNSVLK 424
           K  +  + +  +LK  N  L  S+  LK
Sbjct: 424 KDYASLDVLYEELKTSNERLTISHEKLK 451


>UniRef100_Q84VI0 Gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  129 bits (323), Expect = 1e-27
 Identities = 119/446 (26%), Positives = 196/446 (43%), Gaps = 61/446 (13%)

Query: 3   SFFLGFDADLWDIIVDGYERP--VDTDGKKI----PRSEMTADQKKLYSQHHKARAILLS 56
           +F    D+  W  ++ G+E P  +DT+GK      P  + T ++ +L   + KA   L +
Sbjct: 30  AFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNALFN 89

Query: 57  AISYEEYQKITDREFAKGIF-DSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEM 115
            +    ++ I     AK    + LK +HEG  KVK S+   L  K+E+  M+  E I + 
Sbjct: 90  GVDKNIFRLINTCTVAKDACGEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHDF 149

Query: 116 FSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISIL 175
                 +      L +  T +  V +I+R LP+ +   VT+IE  +D+ NM ++ELI  L
Sbjct: 150 HMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSL 209

Query: 176 KCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKR 235
           +  EL  S+  + K K++A  S  E            EE+E +  +++   + + L+ K+
Sbjct: 210 QTFELGLSDRNEKKSKNLAFVSNDE-----------GEEDEYDLDTDEGLTNAVGLLGKQ 258

Query: 236 LNRIWKHRQSKFKGSGR------AKGK--YESSGQKKSSIKEVTCFECKESGHYKSDCPK 287
            N++      + K   R       KG   ++ S +K S  K + C  C+  GH K++CP 
Sbjct: 259 FNKVLNRMDRRQKPHVRNIPFDIRKGSEYHKKSDEKPSHSKGIQCHGCEGYGHIKAECPT 318

Query: 288 LKKDKKPKKHFKTKKSLMV-TFDESESE-DVDSDGEVQGLMAIVKDKGAESKEAVDSDSE 345
             K        K +K L V   D++ESE + DSD +V  L                    
Sbjct: 319 HLK--------KQRKGLSVCRSDDTESEQESDSDRDVNAL-----------------TGR 353

Query: 346 SEGDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKI 405
            E D +S D    F   + S  K  +     K   +L    +LKK ++ +      HE+ 
Sbjct: 354 FESDEDSSDIEITFDELAISYRKLCI-----KSEKILQQEAQLKKVIANLEAEKEAHEEE 408

Query: 406 ISDLKNENHALVNSNSVLKNQIAKLE 431
           IS+LK E   L   NS L+N    ++
Sbjct: 409 ISELKGEVGFL---NSKLENMTKSIK 431


>UniRef100_Q8H7T1 Putative Zea mays retrotransposon Opie-2 [Oryza sativa]
          Length = 2145

 Score =  127 bits (319), Expect = 3e-27
 Identities = 114/438 (26%), Positives = 193/438 (44%), Gaps = 73/438 (16%)

Query: 1   LESFFLGFDADLWDIIVDGYERPVDTDGKKIPRSEMTADQKKLYSQHHKARAILLSAISY 60
           +E++      ++W+ +   Y  P D D        +T         +++AR  ++  IS 
Sbjct: 24  MEAYLQSQGHNVWNKVKSPYTVPDDAD--------ITPANMAQVDFNYRARNAIIGGISS 75

Query: 61  EEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQ 120
            E+ ++   + A  ++ +L   HEGN  ++  +     ++Y+ F M P ESI+  F RF 
Sbjct: 76  GEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFHKEYQRFEMHPGESIDSYFKRFG 135

Query: 121 LLVAGIRPLNKSYTTKDHVIRIIRCLPES-WMPLVTSIELTRDVENMSLEELISILKCHE 179
            +++ +R + K ++  D+   ++ CL    W   VTSI  +  + ++++++L S LK HE
Sbjct: 136 EIISKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSITESAPLSDLTMDKLYSKLKTHE 195

Query: 180 LKRSEMQDLKKKSIAL-------KSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLI 232
           +     + L K S+AL        S ++ A V    +L A    +EE  E   ED+L L 
Sbjct: 196 MDVFHRKGL-KHSMALVADPSGSTSSNDSAFVYGGFSLAALHSVTEEQLEKIPEDDLALF 254

Query: 233 SKRLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKLKK-- 290
           +++ +R +K+ + + +G                + +   CFEC E  H + +CPKLKK  
Sbjct: 255 ARKFSRAYKNVRDRKRG---------------KTNEPFVCFECGEPNHKRVNCPKLKKKS 299

Query: 291 DKKPKK----HFKTKKSLM--------VTFDESESEDVDSDGEVQG-------------- 324
           DK  KK      K KK LM           +E +  D+DSD + Q               
Sbjct: 300 DKTTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDIDSDDDDQEKGDKDFSGMCCLAN 359

Query: 325 --------LMAIV-KDKGAESKEAVDSDSES-EG---DPNSDDENEVFASFSTSELKHAL 371
                   LMA+  KD  +E  E    D  S +G   D +  D + V    S   + H +
Sbjct: 360 NEDFINLCLMALEDKDDSSEHPEVCLDDIPSLDGSLCDDSCSDNDSVDDELSKERMAHLM 419

Query: 372 SDIMDKYNSLLSTHKKLK 389
            +I DKY S     +KLK
Sbjct: 420 IEISDKYRSSKYKIEKLK 437


>UniRef100_Q852C7 Putative gag-pol polyprotein [Oryza sativa]
          Length = 1969

 Score =  127 bits (319), Expect = 3e-27
 Identities = 114/438 (26%), Positives = 193/438 (44%), Gaps = 73/438 (16%)

Query: 1   LESFFLGFDADLWDIIVDGYERPVDTDGKKIPRSEMTADQKKLYSQHHKARAILLSAISY 60
           +E++      ++W+ +   Y  P D D        +T         +++AR  ++  IS 
Sbjct: 24  MEAYLQSQGHNVWNKVKSPYTVPDDAD--------ITPANMAQVDFNYRARNAIIGGISS 75

Query: 61  EEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQ 120
            E+ ++   + A  ++ +L   HEGN  ++  +     ++Y+ F M P ESI+  F RF 
Sbjct: 76  GEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFHKEYQRFEMHPGESIDSYFKRFG 135

Query: 121 LLVAGIRPLNKSYTTKDHVIRIIRCLPES-WMPLVTSIELTRDVENMSLEELISILKCHE 179
            +++ +R + K ++  D+   ++ CL    W   VTSI  +  + ++++++L S LK HE
Sbjct: 136 EIISKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSITESAPLSDLTMDKLYSKLKTHE 195

Query: 180 LKRSEMQDLKKKSIAL-------KSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLI 232
           +     + L K S+AL        S ++ A V    +L A    +EE  E   ED+L L 
Sbjct: 196 MDVFHRKGL-KHSMALVADPSGSTSSNDSAFVYGGFSLAALHSVTEEQLEKIPEDDLALF 254

Query: 233 SKRLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKLKK-- 290
           +++ +R +K+ + + +G                + +   CFEC E  H + +CPKLKK  
Sbjct: 255 ARKFSRAYKNVRDRKRG---------------KTNEPFVCFECGEPNHKRVNCPKLKKKS 299

Query: 291 DKKPKK----HFKTKKSLM--------VTFDESESEDVDSDGEVQG-------------- 324
           DK  KK      K KK LM           +E +  D+DSD + Q               
Sbjct: 300 DKTTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDIDSDDDDQEKGDKDFSGMCCLAN 359

Query: 325 --------LMAIV-KDKGAESKEAVDSDSES-EG---DPNSDDENEVFASFSTSELKHAL 371
                   LMA+  KD  +E  E    D  S +G   D +  D + V    S   + H +
Sbjct: 360 NEDFINLCLMALEDKDDSSEHPEVCLDDIPSLDGSLCDDSCSDNDSVDDELSKERMAHLM 419

Query: 372 SDIMDKYNSLLSTHKKLK 389
            +I DKY S     +KLK
Sbjct: 420 IEISDKYRSSKYKIEKLK 437


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.355    0.156    0.545 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,136,246,433
Number of Sequences: 2790947
Number of extensions: 78941940
Number of successful extensions: 796058
Number of sequences better than 10.0: 4331
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 4361
Number of HSP's that attempted gapping in prelim test: 753193
Number of HSP's gapped (non-prelim): 23605
length of query: 1602
length of database: 848,049,833
effective HSP length: 141
effective length of query: 1461
effective length of database: 454,526,306
effective search space: 664062933066
effective search space used: 664062933066
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 82 (36.2 bits)