BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0058a.9
(407 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_UPI000023E748 UPI000023E748 UniRef100 entry 47 0.001
UniRef100_UPI00001A08B4 UPI00001A08B4 UniRef100 entry 47 0.001
UniRef100_P49314 31 kDa ribonucleoprotein, chloroplast precursor... 46 0.002
UniRef100_P42731 Polyadenylate-binding protein 2 (Poly(A)-bindin... 46 0.002
UniRef100_Q08937 29 kDa ribonucleoprotein B, chloroplast precurs... 46 0.002
UniRef100_Q43349-2 Splice isoform 2 of Q43349 [Arabidopsis thali... 45 0.004
UniRef100_UPI00002347D1 UPI00002347D1 UniRef100 entry 45 0.005
UniRef100_UPI000021B564 UPI000021B564 UniRef100 entry 45 0.005
UniRef100_Q9DF42 RNA-binding protein Y14 [Xenopus laevis] 45 0.005
UniRef100_Q6PH90 MGC68591 protein [Xenopus laevis] 45 0.005
UniRef100_Q60668-2 Splice isoform 2 of Q60668 [Mus musculus] 45 0.005
UniRef100_Q60668-4 Splice isoform 4 of Q60668 [Mus musculus] 45 0.005
UniRef100_Q43349 29 kDa ribonucleoprotein, chloroplast precursor... 45 0.005
UniRef100_Q8JJC6 RNA binding motif protein 8 [Oryzias latipes] 44 0.006
UniRef100_Q9FYB1 Splicing factor SC35 [Arabidopsis thaliana] 44 0.006
UniRef100_Q9FMG4 Similarity to splicing factor [Arabidopsis thal... 44 0.006
UniRef100_Q8W214 Single-stranded DNA binding protein precursor [... 44 0.006
UniRef100_Q6R969 DNA-binding protein [Lycopersicon esculentum] 44 0.006
UniRef100_P93843 DNA binding protein ACBF [Nicotiana tabacum] 44 0.006
UniRef100_O48955 Putative RNA binding protein [Nicotiana tabacum] 44 0.006
>UniRef100_UPI000023E748 UPI000023E748 UniRef100 entry
Length = 293
Score = 47.0 bits (110), Expect = 0.001
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 10 SFAPISAAARQIGSTTARGVGD------VAGEEEGG----ELDGEADGGSRSCSA-GRRS 58
+ API + + A G+GD AG ++G L G G R S G R
Sbjct: 154 TMAPIGESG---AADVAAGMGDEPSAAAAAGAKKGSYVPPALRGNGSAGERMGSKFGERD 210
Query: 59 CFSVF-IDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKA 117
F+ + + E + LRD+ +FG+V +F+ + R++G F F + R A+KA
Sbjct: 211 DFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKA 270
Query: 118 IQGLNGF 124
++GF
Sbjct: 271 CAKMDGF 277
>UniRef100_UPI00001A08B4 UPI00001A08B4 UniRef100 entry
Length = 174
Score = 46.6 bits (109), Expect = 0.001
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 40 ELDGEADGGSRSCSAGRRSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGR 99
E DG+ G RS + +F+ G+ E + D ++FG++ NL + R++G
Sbjct: 58 EQDGDEPGPQRSVEG-----WILFVTGVHEEATEEDVHDKFAEFGEIKNLHLNLDRRTGY 112
Query: 100 FFRFGFFRYGLRDQALKAIQGLNGFRLGSAPLSASLAWAPWVCGSPRRG 148
+ Y +A A++GLNG L P+S + S RRG
Sbjct: 113 LKGYALVEYETYKEAQAAMEGLNGQELMGQPISVDWCFVRGPPKSKRRG 161
>UniRef100_P49314 31 kDa ribonucleoprotein, chloroplast precursor [Nicotiana
plumbaginifolia]
Length = 292
Score = 46.2 bits (108), Expect = 0.002
Identities = 40/131 (30%), Positives = 53/131 (39%), Gaps = 3/131 (2%)
Query: 6 RASRSFAPISAAARQIGSTTARGVGDVAGEEEGGELDGEADGGSRSCSAGRRSCFSVFID 65
RA R A + A R+ S G G GG DG + G S V++
Sbjct: 157 RAIRVNAGPAPAKRENSSF---GGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVG 213
Query: 66 GIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQGLNGFR 125
+ D L L+++ S+ G VV+ V R SGR FGF Y + AI LNG
Sbjct: 214 NLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGID 273
Query: 126 LGSAPLSASLA 136
L + S A
Sbjct: 274 LDGRSIRVSAA 284
>UniRef100_P42731 Polyadenylate-binding protein 2 (Poly(A)-binding protein 2)
[Arabidopsis thaliana]
Length = 629
Score = 46.2 bits (108), Expect = 0.002
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 50 RSCSAGRRSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYG 109
R S R ++FI ++ES D+ L D S FG +V+ V SG+ +GF +Y
Sbjct: 114 RDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYA 172
Query: 110 LRDQALKAIQGLNGFRL 126
+ A KAI+ LNG L
Sbjct: 173 NEESAQKAIEKLNGMLL 189
Score = 35.8 bits (81), Expect = 2.2
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 50 RSCSAGRRSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYG 109
R +A + +V++ + ES L++ ++GK+ + V + + G+ FGF +
Sbjct: 205 RDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFE 263
Query: 110 LRDQALKAIQGLNGFR 125
D A +A++ LNG +
Sbjct: 264 NADDAARAVESLNGHK 279
>UniRef100_Q08937 29 kDa ribonucleoprotein B, chloroplast precursor [Nicotiana
sylvestris]
Length = 291
Score = 45.8 bits (107), Expect = 0.002
Identities = 40/131 (30%), Positives = 53/131 (39%), Gaps = 3/131 (2%)
Query: 6 RASRSFAPISAAARQIGSTTARGVGDVAGEEEGGELDGEADGGSRSCSAGRRSCFSVFID 65
RA R A + A R+ S G G GG DG + G S V++
Sbjct: 156 RAIRVNAGPAPAKRENSSF---GGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVG 212
Query: 66 GIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQGLNGFR 125
+ D L L+++ S+ G VV+ V R SGR FGF Y + AI LNG
Sbjct: 213 NLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVD 272
Query: 126 LGSAPLSASLA 136
L + S A
Sbjct: 273 LDGRSIRVSAA 283
>UniRef100_Q43349-2 Splice isoform 2 of Q43349 [Arabidopsis thaliana]
Length = 334
Score = 45.1 bits (105), Expect = 0.004
Identities = 41/142 (28%), Positives = 56/142 (38%), Gaps = 8/142 (5%)
Query: 5 ARASRSFAPISAAARQIGSTTARGVGDVAGEEEGGELDGEADGGSRSCS--------AGR 56
+R RS S GS G G G G + G GGS+ S +G
Sbjct: 186 SRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGS 245
Query: 57 RSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALK 116
S +++ + D + L ++ ++ GKVV V R SGR FGF + K
Sbjct: 246 GSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQK 305
Query: 117 AIQGLNGFRLGSAPLSASLAWA 138
AI LNG L + S A A
Sbjct: 306 AINSLNGADLDGRQIRVSEAEA 327
>UniRef100_UPI00002347D1 UPI00002347D1 UniRef100 entry
Length = 785
Score = 44.7 bits (104), Expect = 0.005
Identities = 34/128 (26%), Positives = 53/128 (40%), Gaps = 15/128 (11%)
Query: 11 FAPISAAARQIGSTTARGVGDVAGEEEGGELD-------------GEADGGSRSCSAGRR 57
F A + G+ A G G AGE+ G L G A GG R +
Sbjct: 643 FKDTMAPVDEPGAGGAEG-GAAAGEDAAGGLGAGGGSYVPPHLRKGAAGGGERMAGKYEK 701
Query: 58 SCFSVF-IDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALK 116
+ + + E + LRD+ +FG+V +F+ R R++ R F F + R A +
Sbjct: 702 DDLATLRVTNVSELAEEQELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRSDAAR 761
Query: 117 AIQGLNGF 124
A ++GF
Sbjct: 762 ACDKMDGF 769
>UniRef100_UPI000021B564 UPI000021B564 UniRef100 entry
Length = 303
Score = 44.7 bits (104), Expect = 0.005
Identities = 29/113 (25%), Positives = 51/113 (44%), Gaps = 10/113 (8%)
Query: 22 GSTTARGVGDVAGEEEGGEL---------DGEADGGSRSCSAGRRSCFSVF-IDGIEESF 71
G +A G AG ++G + +GE GG G R + + + E
Sbjct: 175 GILSAPGAAGGAGAKKGSYVPPALRGDRKEGEKMGGGAGGKYGERDDLATLRVTNVSEMA 234
Query: 72 DYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQGLNGF 124
+ LRD+ +FG+V +F+ + R +G F F + R+ A+KA ++G+
Sbjct: 235 EEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADREDAVKACNKMDGW 287
>UniRef100_Q9DF42 RNA-binding protein Y14 [Xenopus laevis]
Length = 174
Score = 44.7 bits (104), Expect = 0.005
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 40 ELDGEADGGSRSCSAGRRSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGR 99
E DG+ G RS + +F+ G+ E + D +FG++ N+ + R++G
Sbjct: 58 EQDGDEPGPQRSVEG-----WILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGF 112
Query: 100 FFRFGFFRYGLRDQALKAIQGLNGFRLGSAPLSASLAWAPWVCGSPR 146
+ Y +AL A++GLNG L P+S W +V G P+
Sbjct: 113 LKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVD--WG-FVRGPPK 156
>UniRef100_Q6PH90 MGC68591 protein [Xenopus laevis]
Length = 174
Score = 44.7 bits (104), Expect = 0.005
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 40 ELDGEADGGSRSCSAGRRSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGR 99
E DG+ G RS + +F+ G+ E + D +FG++ N+ + R++G
Sbjct: 58 EQDGDEPGPQRSVEG-----WILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGF 112
Query: 100 FFRFGFFRYGLRDQALKAIQGLNGFRLGSAPLSASLAWAPWVCGSPR 146
+ Y +AL A++GLNG L P+S W +V G P+
Sbjct: 113 LKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVD--WG-FVRGPPK 156
>UniRef100_Q60668-2 Splice isoform 2 of Q60668 [Mus musculus]
Length = 336
Score = 44.7 bits (104), Expect = 0.005
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 7 ASRSFAPISAAARQIGSTTARGVGDVAGEEEGGELDGEADGGSRSCSAGRRSCFSVFIDG 66
A+ + P +AA G G G AG EGG EA+G S +R + +FI G
Sbjct: 32 AAAAQGPAAAAGSGSG-----GGGSAAGGTEGGS--AEAEGAKIDASKNQREEWKMFIGG 84
Query: 67 IEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGF 105
+ L+D SKFG+VV+ ++ +GR FGF
Sbjct: 85 LSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGF 123
>UniRef100_Q60668-4 Splice isoform 4 of Q60668 [Mus musculus]
Length = 287
Score = 44.7 bits (104), Expect = 0.005
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 7 ASRSFAPISAAARQIGSTTARGVGDVAGEEEGGELDGEADGGSRSCSAGRRSCFSVFIDG 66
A+ + P +AA G G G AG EGG EA+G S +R + +FI G
Sbjct: 32 AAAAQGPAAAAGSGSG-----GGGSAAGGTEGGS--AEAEGAKIDASKNQREEWKMFIGG 84
Query: 67 IEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGF 105
+ L+D SKFG+VV+ ++ +GR FGF
Sbjct: 85 LSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGF 123
>UniRef100_Q43349 29 kDa ribonucleoprotein, chloroplast precursor [Arabidopsis
thaliana]
Length = 342
Score = 44.7 bits (104), Expect = 0.005
Identities = 37/125 (29%), Positives = 51/125 (40%), Gaps = 8/125 (6%)
Query: 22 GSTTARGVGDVAGEEEGGELDGEADGGSRSCS--------AGRRSCFSVFIDGIEESFDY 73
GS G G G G + G GGS+ S +G S +++ + D
Sbjct: 211 GSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDD 270
Query: 74 LHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQGLNGFRLGSAPLSA 133
+ L ++ ++ GKVV V R SGR FGF + KAI LNG L +
Sbjct: 271 MALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRV 330
Query: 134 SLAWA 138
S A A
Sbjct: 331 SEAEA 335
>UniRef100_Q8JJC6 RNA binding motif protein 8 [Oryzias latipes]
Length = 173
Score = 44.3 bits (103), Expect = 0.006
Identities = 31/107 (28%), Positives = 50/107 (45%), Gaps = 8/107 (7%)
Query: 40 ELDGEADGGSRSCSAGRRSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGR 99
E DG+ G RS + +F+ G+ E + D S+FG++ NL + R++G
Sbjct: 56 EQDGDEPGPQRSVEG-----WILFVTGVHEEATEEDIHDKFSEFGEIKNLHLNLDRRTGY 110
Query: 100 FFRFGFFRYGLRDQALKAIQGLNGFRLGSAPLSASLAWAPWVCGSPR 146
+ Y +A A++GLN L P+S WA +V G P+
Sbjct: 111 LKGYALVEYETYKEAQAAMEGLNAQDLMGQPVSVD--WA-FVRGPPK 154
>UniRef100_Q9FYB1 Splicing factor SC35 [Arabidopsis thaliana]
Length = 303
Score = 44.3 bits (103), Expect = 0.006
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 76 LRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQGLNG 123
L + +K+GKVV++F+ R R++G F F RY +D+A KA++ L+G
Sbjct: 32 LYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDG 79
>UniRef100_Q9FMG4 Similarity to splicing factor [Arabidopsis thaliana]
Length = 303
Score = 44.3 bits (103), Expect = 0.006
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 76 LRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQGLNG 123
L + +K+GKVV++F+ R R++G F F RY +D+A KA++ L+G
Sbjct: 32 LYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDG 79
>UniRef100_Q8W214 Single-stranded DNA binding protein precursor [Solanum tuberosum]
Length = 289
Score = 44.3 bits (103), Expect = 0.006
Identities = 35/113 (30%), Positives = 47/113 (40%), Gaps = 15/113 (13%)
Query: 37 EGGELDGEADGGSRSCSAGRRSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRK 96
+GG G D +R V++ + S D L + S+ GKVV+ V R
Sbjct: 192 QGGRGGGSMDSSNR-----------VYVGNLAWSVDQQQLETLFSEQGKVVDAKVVYDRD 240
Query: 97 SGRFFRFGFFRYGLRDQALKAIQGLNGFRLGSAPLSASLAWAPWVCGSPRRGF 149
SGR FGF Y + AI+ L+G LG + S P PRR F
Sbjct: 241 SGRSRGFGFVTYSSAKEVNDAIESLDGVDLGGRAIRVS----PAEARPPRRQF 289
Score = 35.4 bits (80), Expect = 2.9
Identities = 36/130 (27%), Positives = 54/130 (40%), Gaps = 14/130 (10%)
Query: 35 EEEGGELDGEADGGSRSCSAGRRSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQ 94
EEEGG D A R+ + + +F+ + S D L ++ + G V + V
Sbjct: 78 EEEGGLSDEGASYEERNANPDLK----IFVGNLPFSVDSAALAELFERAGDVEMVEVIYD 133
Query: 95 RKSGRFFRFGFFRYGLRDQALKAIQGLNGFRLGSAPLSASLAWAPWVCGSPRR--GFGLC 152
+ +GR FGF ++ A Q NG+ + L + AP P+R FG
Sbjct: 134 KLTGRSRGFGFVTMSSKEAVEAACQQFNGYEIDGRALRVNSGPAP-----PKRENSFG-- 186
Query: 153 SQASSAQGQR 162
SS QG R
Sbjct: 187 -DNSSYQGGR 195
>UniRef100_Q6R969 DNA-binding protein [Lycopersicon esculentum]
Length = 428
Score = 44.3 bits (103), Expect = 0.006
Identities = 22/90 (24%), Positives = 47/90 (51%)
Query: 61 SVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQG 120
+++I +++ D +L ++ G+V+++ V R +++G+ R+GF + + A K +Q
Sbjct: 80 TIWIGDLQQWMDEGYLHTCFAQAGEVISVKVIRNKQTGQSERYGFIEFNTHEAAEKVLQS 139
Query: 121 LNGFRLGSAPLSASLAWAPWVCGSPRRGFG 150
NG + +A L W+ + G R G
Sbjct: 140 YNGTMMPNAEQPFRLNWSAFSSGEKRADVG 169
>UniRef100_P93843 DNA binding protein ACBF [Nicotiana tabacum]
Length = 428
Score = 44.3 bits (103), Expect = 0.006
Identities = 23/90 (25%), Positives = 46/90 (50%)
Query: 61 SVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQG 120
+++I +++ D +L S+ G+V+++ + R +++G+ R+GF + A K +Q
Sbjct: 85 TIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQS 144
Query: 121 LNGFRLGSAPLSASLAWAPWVCGSPRRGFG 150
NG + +A L WA + G R G
Sbjct: 145 YNGTMMPNAEQPFRLNWAGFSTGEKRAETG 174
Score = 34.3 bits (77), Expect = 6.5
Identities = 27/96 (28%), Positives = 48/96 (49%), Gaps = 10/96 (10%)
Query: 42 DGEADGGSRSCSAGRRSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFF 101
+G A GS+S G S ++F+ G++ LR ++FG+VV++ + +
Sbjct: 279 NGAATHGSQS--DGDASNTTIFVGGLDSDVTDEELRQSFNQFGEVVSVKIPAGKGC---- 332
Query: 102 RFGFFRYGLRDQALKAIQGLNGFRLGSAPLSASLAW 137
GF ++ R A +AIQ L+G +G + L+W
Sbjct: 333 --GFVQFSDRSSAQEAIQKLSGAIIGKQ--AVRLSW 364
>UniRef100_O48955 Putative RNA binding protein [Nicotiana tabacum]
Length = 482
Score = 44.3 bits (103), Expect = 0.006
Identities = 23/90 (25%), Positives = 46/90 (50%)
Query: 61 SVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQG 120
+++I +++ D +L S+ G+V+++ + R +++G+ R+GF + A K +Q
Sbjct: 139 TIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQS 198
Query: 121 LNGFRLGSAPLSASLAWAPWVCGSPRRGFG 150
NG + +A L WA + G R G
Sbjct: 199 YNGTMMPNAEQPFRLNWAGFSTGEKRAETG 228
Score = 35.0 bits (79), Expect = 3.8
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 42 DGEADGGSRSCSAGRRSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFF 101
+G A GS+S G S ++F+ G++ LR ++FG+VV++ + +
Sbjct: 333 NGAATHGSQS--DGDASNTTIFVGGLDSDVTDEELRQSFNQFGEVVSVKIPAGKGC---- 386
Query: 102 RFGFFRYGLRDQALKAIQGLNGFRLGSAPLSASLAWAP 139
GF ++ R A +AIQ L+G +G + S +P
Sbjct: 387 --GFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSP 422
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.325 0.142 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 688,878,691
Number of Sequences: 2790947
Number of extensions: 30184148
Number of successful extensions: 96893
Number of sequences better than 10.0: 1019
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 292
Number of HSP's that attempted gapping in prelim test: 95257
Number of HSP's gapped (non-prelim): 1767
length of query: 407
length of database: 848,049,833
effective HSP length: 130
effective length of query: 277
effective length of database: 485,226,723
effective search space: 134407802271
effective search space used: 134407802271
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 76 (33.9 bits)
Lotus: description of TM0058a.9