BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0590c.4
         (84 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UL52_HHV7J (P52468) Helicase/primase complex protein                   29  1.9
REGQ_BP82 (P13870) Antitermination protein Q                           28  3.2
YBK4_YEAST (P38164) Hypothetical 104.7 kDa protein in PKC1-RTG3 ...    28  4.2
KYK2_DICDI (P18161) Tyrosine-protein kinase 2 (EC 2.7.1.112) (Fr...    28  5.4
RCAC_FREDI (Q01473) RcaC protein                                       27  7.1
IF2_HELPJ (Q9ZM46) Translation initiation factor IF-2                  27  9.3
DNLI_YEAST (P04819) DNA ligase I, mitochondrial precursor (EC 6....    27  9.3

>UL52_HHV7J (P52468) Helicase/primase complex protein
          Length = 861

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 17/55 (30%), Positives = 27/55 (48%), Gaps = 1/55 (1%)

Query: 21  GVYNRRRNYALRSLQQRVVKNNNITPNGNSSSAAAIPSKVKRSNQEFMRKVMDLN 75
           G+YN  R   L     +V + NN    G       +P K+K++ Q+F+   +DLN
Sbjct: 625 GIYNTGRCLRL-GFMYKVDEENNRFLYGRLKPIFIVPEKMKKNFQDFVSMQLDLN 678


>REGQ_BP82 (P13870) Antitermination protein Q
          Length = 229

 Score = 28.5 bits (62), Expect = 3.2
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%)

Query: 1  MSAATRSLIVGAVEALKDKLGVYNRRRNYALRSLQQRVVKNNNITPNGNSS----SAAAI 56
          +S AT+  +   +E  +   G Y R++   L  +  R++  +N   +G  S    S+ A+
Sbjct: 20 LSGATKGQLEAWLEHAQFDTGTYKRKKPRILDEVTGRMITLDNPPISGKQSYAKGSSIAL 79

Query: 57 PSKVKRSNQEFMRKVMDL 74
           S+V+ S   + R V+ L
Sbjct: 80 VSQVEFSTSSWRRAVLSL 97


>YBK4_YEAST (P38164) Hypothetical 104.7 kDa protein in PKC1-RTG3
           intergenic region
          Length = 925

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 8/75 (10%)

Query: 3   AATRSLIVGAVEALKDKLGVYNRRRNY--ALRSLQQRVVKNNNITPNGNSSSAAAIPSKV 60
           AA    IVG+V  LKD  G      NY   +R+ +QR + +  I  NG       I   +
Sbjct: 48  AAQAENIVGSVSNLKDTQGYPVSETNYDIRVRAKKQRCINSLGINTNG------LIAMGL 101

Query: 61  KRSNQEFMRKVMDLN 75
            R+  +   ++ D+N
Sbjct: 102 DRNKHDSSLQIWDMN 116


>KYK2_DICDI (P18161) Tyrosine-protein kinase 2 (EC 2.7.1.112)
          (Fragment)
          Length = 410

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 13/66 (19%), Positives = 33/66 (49%)

Query: 8  LIVGAVEALKDKLGVYNRRRNYALRSLQQRVVKNNNITPNGNSSSAAAIPSKVKRSNQEF 67
          L+    ++ K+K  V N     +  +L + +  N+++ P G S S + I S + + +   
Sbjct: 15 LVCDNPDSTKEKSNVSNTSSIISASNLNRHITPNSHMRPRGRSISESLIMSPINKESLND 74

Query: 68 MRKVMD 73
          +++ ++
Sbjct: 75 IQRAIE 80


>RCAC_FREDI (Q01473) RcaC protein
          Length = 651

 Score = 27.3 bits (59), Expect = 7.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 27  RNYALRSLQQRVVKNNNITPNGNSSSAAAI 56
           R Y L++     V N ++TP  NS SAA I
Sbjct: 217 RGYYLKAPSTEEVNNLSVTPENNSHSAAVI 246


>IF2_HELPJ (Q9ZM46) Translation initiation factor IF-2
          Length = 949

 Score = 26.9 bits (58), Expect = 9.3
 Identities = 17/57 (29%), Positives = 23/57 (39%)

Query: 13  VEALKDKLGVYNRRRNYALRSLQQRVVKNNNITPNGNSSSAAAIPSKVKRSNQEFMR 69
           +E  K KL    + R    +  Q      NN     N S+A    S+VK+  QE  R
Sbjct: 151 IEKAKQKLQEIQKSREALNKLTQSNTNTTNNANSASNVSNAKKEISEVKKQEQEIKR 207


>DNLI_YEAST (P04819) DNA ligase I, mitochondrial precursor (EC
           6.5.1.1) (Polydeoxyribonucleotide synthase [ATP])
          Length = 755

 Score = 26.9 bits (58), Expect = 9.3
 Identities = 13/48 (27%), Positives = 24/48 (49%)

Query: 16  LKDKLGVYNRRRNYALRSLQQRVVKNNNITPNGNSSSAAAIPSKVKRS 63
           L+D++   +    YA + L+Q  V +    P+   S+ ++IPS    S
Sbjct: 67  LEDRMDNVSGEEEYATKKLKQTAVTHTVAAPSSMGSNFSSIPSSAPSS 114


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.315    0.126    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,110,130
Number of Sequences: 164201
Number of extensions: 249206
Number of successful extensions: 908
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 904
Number of HSP's gapped (non-prelim): 7
length of query: 84
length of database: 59,974,054
effective HSP length: 60
effective length of query: 24
effective length of database: 50,121,994
effective search space: 1202927856
effective search space used: 1202927856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)