BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0348.15
         (242 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TRA1_LACHE (P35880) Transposase for insertion sequence element I...    33  0.47
TRA0_MYCSM (P35883) Transposase for insertion sequence element I...    32  1.1
INSR_HUMAN (P06213) Insulin receptor precursor (EC 2.7.1.112) (I...    30  5.2
HIS8_LACLA (Q02135) Histidinol-phosphate aminotransferase (EC 2....    30  5.2
ZSW3_MOUSE (Q8CFL8) Zinc finger SWIM domain containing protein 3       30  6.8
UL07_SHV21 (Q01028) Gene 42 protein                                    30  6.8
INSR_RAT (P15127) Insulin receptor precursor (EC 2.7.1.112) (IR)       30  6.8
INSR_MOUSE (P15208) Insulin receptor precursor (EC 2.7.1.112) (IR)     30  6.8
YB9X_YEAST (P38149) Hypothetical 98.1 kDa Trp-Asp repeats contai...    29  8.9
SERA_ARCFU (O29445) D-3-phosphoglycerate dehydrogenase (EC 1.1.1...    29  8.9
RA50_AQUAE (O67124) Probable DNA double-strand break repair rad5...    29  8.9

>TRA1_LACHE (P35880) Transposase for insertion sequence element
           IS1201
          Length = 369

 Score = 33.5 bits (75), Expect = 0.47
 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 7/118 (5%)

Query: 123 VGLTSTGLTYSIAFCYMTRERTPDYVWALECMKSLLADPARLPGVIVTDRELALLSAVRN 182
           +G+   G    I +C    E    +   L+ MKS   +   L    ++D  + + +A+  
Sbjct: 183 IGIKPNGHKEVIDYCIAPNENIEVWTELLQSMKSRGLEQVEL---FLSDGVVGMKTALAK 239

Query: 183 IFPGATHLLCLFHINKNVEAKCKL---WVDTTDFKALEMQKWNEVVYAETTTQFEEEW 237
            +P A    CL H+ +N+ AK ++        +FK +  Q  N+    +    F  +W
Sbjct: 240 TYPQAHFQRCLVHVMRNICAKVRVEDREAIMNEFKQIHQQA-NKAAAVDVLHAFYAKW 296


>TRA0_MYCSM (P35883) Transposase for insertion sequence element
           IS6120
          Length = 323

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 11/88 (12%)

Query: 119 LLEMVGLTSTGLTYSIAFCYMTRERTPDYVWALECMKSLLADPAR----LPGVIVTDREL 174
           LL M+G+ + G    +A        T  Y  + E    LL D  R     P + + D  L
Sbjct: 82  LLVMLGVRADGRKELVAI-------TDGYRESAESWADLLRDCKRRGMTAPVLAIGDGAL 134

Query: 175 ALLSAVRNIFPGATHLLCLFHINKNVEA 202
               AVR +FP      C FH   NV A
Sbjct: 135 GFWKAVREVFPATKEQRCWFHKQANVLA 162


>INSR_HUMAN (P06213) Insulin receptor precursor (EC 2.7.1.112) (IR)
            (CD220 antigen)
          Length = 1382

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 25/120 (20%), Positives = 50/120 (40%), Gaps = 14/120 (11%)

Query: 13   NNNWVPPRHMLATLKENNPGNLSTITQVYNRIKKVKELDCGPLTEMQYLLKKLAEANYVH 72
            N +W  P +   T   + P N++ I               GPL  + +L   +  + Y+ 
Sbjct: 933  NGSWTEPTYFYVTDYLDVPSNIAKII-------------IGPLIFV-FLFSVVIGSIYLF 978

Query: 73   FKRHEEDSGVIMELFWSHPNAIKLFNTFPHVVIMDCTYKTNKFQIPLLEMVGLTSTGLTY 132
             ++ + D  +      S+P  +   + FP  V +   ++ ++ +I LL  +G  S G+ Y
Sbjct: 979  LRKRQPDGPLGPLYASSNPEYLSASDVFPCSVYVPDEWEVSREKITLLRELGQGSFGMVY 1038


>HIS8_LACLA (Q02135) Histidinol-phosphate aminotransferase (EC
           2.6.1.9) (Imidazole acetol-phosphate transaminase)
          Length = 360

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 30  NPGNLSTITQVYNRIKKVKELDCGPLTEMQYLLKKLAEANYVHFKRHEEDSGVIMELFWS 89
           NP   +++ Q++N   K K L   P T+ + L KKLA+ +++  ++    +G    L  S
Sbjct: 32  NPYPPTSVAQLFNERYKTKNLRLYPSTDAKSLRKKLADYHHLEVEQVIIGNGSDEVLSLS 91

Query: 90  HPNAIKLFNTFPHVVIMDCTY 110
               +  FN+   +++ D TY
Sbjct: 92  F---LTFFNSQSPLLMPDITY 109


>ZSW3_MOUSE (Q8CFL8) Zinc finger SWIM domain containing protein 3
          Length = 695

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 22/96 (22%), Positives = 37/96 (37%), Gaps = 1/96 (1%)

Query: 134 IAFCYMTRERTPDYVWALECMKSLLADPARLPGVIVTDRELALLSAVRNIFPGATHLLCL 193
           + F  +  E  P     L       +D  ++  V V D      + ++ IFP A  LL +
Sbjct: 246 VHFAVLKAETAPSVAKMLNIFTEFNSDWPKVKMVFV-DPSFPHRAILQEIFPSARTLLSI 304

Query: 194 FHINKNVEAKCKLWVDTTDFKALEMQKWNEVVYAET 229
           +H  + +E K         FK L  +   E V+  +
Sbjct: 305 YHTTRLLEKKLHQSSVNASFKRLMKEALREAVFVSS 340


>UL07_SHV21 (Q01028) Gene 42 protein
          Length = 265

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 13/99 (13%)

Query: 81  GVIMELFWSHPNAIKLFNTFPHVVIMDCTYKTNKFQIPLLEMVGL---------TSTGLT 131
           G +M  F  + + +   N FPH V     +  N     LLEM GL          S+ L 
Sbjct: 72  GFVMACFVENEDMVDSINMFPH-VFSSRLFIYNPCNHILLEMCGLLSMLKNLNTPSSSLL 130

Query: 132 YSI---AFCYMTRERTPDYVWALECMKSLLADPARLPGV 167
            +I   A+   T+ R PD  + L  +K+L +  +   G+
Sbjct: 131 SAIVERAYYLWTKSRCPDATFLLHGIKTLASTSSYFYGI 169


>INSR_RAT (P15127) Insulin receptor precursor (EC 2.7.1.112) (IR)
          Length = 1383

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 14/120 (11%)

Query: 13   NNNWVPPRHMLATLKENNPGNLSTITQVYNRIKKVKELDCGPLTEMQYLLKKLAEANYVH 72
            N +W  P +   T   + P N++ I               GPL  + +L   +  + Y+ 
Sbjct: 934  NGSWTEPTYFYVTDYLDVPSNIAKII-------------IGPLIFV-FLFSVVIGSIYLF 979

Query: 73   FKRHEEDSGVIMELFWSHPNAIKLFNTFPHVVIMDCTYKTNKFQIPLLEMVGLTSTGLTY 132
             ++ + D  +      S+P  +   + FP  V +   ++  + +I LL  +G  S G+ Y
Sbjct: 980  LRKRQPDGPMGPLYASSNPEYLSASDVFPSSVYVPDEWEVPREKITLLRELGQGSFGMVY 1039


>INSR_MOUSE (P15208) Insulin receptor precursor (EC 2.7.1.112) (IR)
          Length = 1372

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 14/120 (11%)

Query: 13   NNNWVPPRHMLATLKENNPGNLSTITQVYNRIKKVKELDCGPLTEMQYLLKKLAEANYVH 72
            N +W  P +   T   + P N++ I               GPL  + +L   +  + Y+ 
Sbjct: 923  NGSWTEPTYFYVTDYLDVPSNIAKII-------------IGPLIFV-FLFSVVIGSIYLF 968

Query: 73   FKRHEEDSGVIMELFWSHPNAIKLFNTFPHVVIMDCTYKTNKFQIPLLEMVGLTSTGLTY 132
             ++ + D  +      S+P  +   + FP  V +   ++  + +I LL  +G  S G+ Y
Sbjct: 969  LRKRQPDGPMGPLYASSNPEYLSASDVFPSSVYVPDEWEVPREKITLLRELGQGSFGMVY 1028


>YB9X_YEAST (P38149) Hypothetical 98.1 kDa Trp-Asp repeats
           containing protein in PAF1-MRPL27 intergenic region
          Length = 878

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 4   EEKVQVDSMNNNWVPPRHMLATLKENNPGNLSTI 37
           +E   V  +  NW  P   + T+K + PGN++ I
Sbjct: 707 DENTTVQDLITNWTKPSLSMTTVKFSGPGNITVI 740


>SERA_ARCFU (O29445) D-3-phosphoglycerate dehydrogenase (EC
           1.1.1.95) (PGDH)
          Length = 527

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 11/37 (29%), Positives = 22/37 (58%)

Query: 7   VQVDSMNNNWVPPRHMLATLKENNPGNLSTITQVYNR 43
           +++D  N N+VP  H + +L E+ PG +  +  ++ R
Sbjct: 438 LKIDVYNVNFVPKGHYIISLHEDKPGVIGRVGTLFGR 474


>RA50_AQUAE (O67124) Probable DNA double-strand break repair rad50
           ATPase
          Length = 978

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 2   TEEEKVQVDSMNNNWVPPRHMLATLKENNPGNLSTITQVYNRIKKVKELDCGPLTEMQYL 61
           +EEE   +       V  +  L  LKE   G L  +TQ Y   KKV E     L E++  
Sbjct: 405 SEEEYTSLKMKERLLVELQRKLKELKEKE-GQLENLTQKYKEKKKVHEKVLNELKELERE 463

Query: 62  LKKLAEANYVHFKRH 76
           LK+      +H+  H
Sbjct: 464 LKE----RELHYHAH 474


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.321    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,354,914
Number of Sequences: 164201
Number of extensions: 1131025
Number of successful extensions: 2663
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2661
Number of HSP's gapped (non-prelim): 11
length of query: 242
length of database: 59,974,054
effective HSP length: 107
effective length of query: 135
effective length of database: 42,404,547
effective search space: 5724613845
effective search space used: 5724613845
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)