BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0346.9
(569 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RFA1_SCHPO (Q92372) Replication factor-A protein 1 (Single-stran... 70 1e-11
RFA1_HUMAN (P27694) Replication protein A 70 kDa DNA-binding sub... 60 1e-08
RFA1_YEAST (P22336) Replication factor-A protein 1 (RF-A) (Singl... 57 2e-07
RFA1_XENLA (Q01588) Replication protein A 70 kDa DNA-binding sub... 54 8e-07
RFA1_CAEEL (Q19537) Probable replication factor A 73 kDa subunit... 47 1e-04
RFA1_CRIFA (Q23696) Replication factor A 51 kDa subunit (RP-A) (... 36 0.24
FPG_MYCPU (Q98QQ1) Formamidopyrimidine-DNA glycosylase (EC 3.2.2... 33 1.5
ODPA_RHIME (Q9R9N5) Pyruvate dehydrogenase E1 component, alpha s... 33 2.6
HI82_BACCR (Q81C43) Histidinol-phosphate aminotransferase 2 (EC ... 33 2.6
GRP1_BUCAI (P57340) GrpE protein 1 (HSP-70 cofactor 1) 32 3.4
BACA_BACLI (O68006) Bacitracin synthetase 1 (BA1) [Includes: ATP... 32 3.4
OTX_STRPU (Q26417) Homeobox protein OTX (SPOTX) 32 4.4
YVRE_BACSU (O34940) Hypothetical protein yvrE 31 7.6
SIL1_CYLFU (Q9SE35) Silaffin 1 precursor (natSil-1) [Contains: S... 31 7.6
MAT3_RAT (P43244) Matrin 3 31 7.6
ACON_RICPR (Q9ZCF4) Aconitate hydratase (EC 4.2.1.3) (Citrate hy... 31 9.9
>RFA1_SCHPO (Q92372) Replication factor-A protein 1 (Single-stranded
DNA-binding protein p68 subunit)
Length = 609
Score = 70.5 bits (171), Expect = 1e-11
Identities = 95/380 (25%), Positives = 160/380 (42%), Gaps = 65/380 (17%)
Query: 1 MSGKIYVISTINPSKETWNIVAKVQ-----RLWLSPSLYGSKLPFSLDMVLVDSKGDKIH 55
+S IY I ++P + W I A+V + W + G FS++ L+D G+ I
Sbjct: 175 LSTIIYPIEGLSPYQNKWTIRARVTNKSEVKHWHNQR--GEGKLFSVN--LLDESGE-IR 229
Query: 56 ATVRKTLIYRFQSLLTEGRVYQISFFGVGESGRDFRTTGHAFKINFQIHTFVCVVTN-TP 114
AT + F +L EG VY IS V + + + + +++ F+ T + + T
Sbjct: 230 ATGFNDQVDAFYDILQEGSVYYISRCRVNIAKKQYTNVQNEYELMFERDTEIRKAEDQTA 289
Query: 115 INHSPYSFMAISEIMFNDPDASFLIDVIGILTGASGEHEFEKD----GVSQKKITLELDQ 170
+ + +SF+++ E+ D +IDVIG+L + G ++ IT+ +DQ
Sbjct: 290 VPVAKFSFVSLQEV--GDVAKDAVIDVIGVLQNVGPVQQITSRATSRGFDKRDITI-VDQ 346
Query: 171 DGIH---NVYGATKILFNPAIDE--ATKIRERNDPASQVLSQLQDSGMIY----VEEDLL 221
G ++G T I F+ + + A K + ND + LS L S M E LL
Sbjct: 347 TGYEMRVTLWGKTAIEFSVSEESILAFKGVKVNDFQGRSLSMLTSSTMSVDPDIQESHLL 406
Query: 222 R----------------------QTDGKTIEQIKDLTE-----------KSYCVVLGTMK 248
+ T G++ E+ K++ E Y + GT+
Sbjct: 407 KGWYDGQGRGQEFAKHSVISSTLSTTGRSAER-KNIAEVQAEHLGMSETPDYFSLKGTIV 465
Query: 249 YIPDGMDWYYPACK---CSKKVYPADGMYFCEACNRHVASPLYKFRIQLRVMNSKNTATF 305
YI + YPAC C+KKV+ G + CE CN+ +P Y++ I + V +
Sbjct: 466 YIRK-KNVSYPACPAADCNKKVFDQGGSWRCEKCNKEYDAPQYRYIITIAVGDHTGQLWL 524
Query: 306 VLFDQEANSVVKKPCAILVD 325
+FD ++ K L D
Sbjct: 525 NVFDDVGKLIMHKTADELND 544
>RFA1_HUMAN (P27694) Replication protein A 70 kDa DNA-binding
subunit (RP-A) (RF-A) (Replication factor-A protein 1)
(Single-stranded DNA-binding protein)
Length = 616
Score = 60.5 bits (145), Expect = 1e-08
Identities = 100/432 (23%), Positives = 170/432 (39%), Gaps = 81/432 (18%)
Query: 4 KIYVISTINPSKETWNIVAKVQ-----RLWLSPSLYGSKLPFSLDMVLVDSKGDKIHATV 58
K+ I+++ P + W I A+V R W S S KL FSL+ LVD G+ I AT
Sbjct: 183 KVVPIASLTPYQSKWTICARVTNKSQIRTW-SNSRGEGKL-FSLE--LVDESGE-IRATA 237
Query: 59 RKTLIYRFQSLLTEGRVYQISFFGVGESGRDFRTTGHAFKINFQIHTFVCVVTNTPINHS 118
+ +F L+ +VY S + + + F + +++ F T V + +H
Sbjct: 238 FNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDD--HHL 295
Query: 119 P---YSFMAISEIMFNDPDASFLIDVIGI---------LTGASGEHEFEKDGV-----SQ 161
P + F I ++ D+ L+D+IGI +T S E K + S
Sbjct: 296 PTVQFDFTGIDDLENKSKDS--LVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSG 353
Query: 162 KKITLEL---DQDGIH----------------------NVYGATKILFNPAIDEATKIRE 196
K +T L D D +V ++ I+ NP I EA K+R
Sbjct: 354 KVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRG 413
Query: 197 RNDPASQVL-----SQLQDSGMIYVEEDLLRQTDGKTIEQIKDLT-----EKSYCVVLGT 246
D Q L S L+ G+ T+ KT+ ++K + Y + T
Sbjct: 414 WFDAEGQALDGVSISDLKSGGVGG------SNTNWKTLYEVKSENLGQGDKPDYFSSVAT 467
Query: 247 MKYIPDGMDWYY--PACKCSKKVYPA-DGMYFCEACNRHVASPLYKFRIQLRVMNSKNTA 303
+ Y+ Y P C+KKV +G+Y CE C+ + Y+ + + + + +
Sbjct: 468 VVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQ 527
Query: 304 TFVLFDQEANSVVKKPCAILVDASNKAGPDSPNVPSDILDLIDRTFLFKIEVSNSSNSIY 363
F + A +++ + A L + +K V + R+F+F++ V + Y
Sbjct: 528 WVTCFQESAEAILGQNAAYLGELKDKNEQAFEEV---FQNANFRSFIFRVRVKVET---Y 581
Query: 364 EPSYRVKKFCYD 375
R+K D
Sbjct: 582 NDESRIKATVMD 593
>RFA1_YEAST (P22336) Replication factor-A protein 1 (RF-A)
(Single-stranded DNA-binding protein) (DNA binding
protein BUF2) (Replication protein A 69 kDa DNA-binding
subunit)
Length = 621
Score = 56.6 bits (135), Expect = 2e-07
Identities = 77/368 (20%), Positives = 152/368 (40%), Gaps = 62/368 (16%)
Query: 5 IYVISTINPSKETWNIVAKVQRLWLSPSLYGSKLPFSLDMV-LVDSKGDKIHATVRKTLI 63
I+ I ++P + W I A+V + + + L V +D+ G+ I AT
Sbjct: 184 IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGE-IRATAFNDFA 242
Query: 64 YRFQSLLTEGRVYQISFFGVGESGRDFRTTGHAFKINFQIHTFV--CV-VTNTPINHSPY 120
+F +L EG+VY +S + + F H +++N T + C +N P H +
Sbjct: 243 TKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFDESNVPKTH--F 300
Query: 121 SFMAISEIMFNDPDASFLIDVIGI---------LTGASGEHEFEKD-------GVS---- 160
+F+ + I + +++ +DV+GI LT +G+ +D G S
Sbjct: 301 NFIKLDAIQNQEVNSN--VDVLGIIQTINPHFELTSRAGKKFDRRDITIVDDSGFSISVG 358
Query: 161 ---QKKITLELDQDGIHNVYG---------------ATKILFNPAIDEATKIRERNDPAS 202
Q+ + L + + + G ++ ++ NP I EA ++ D
Sbjct: 359 LWNQQALDFNLPEGSVAAIKGVRVTDFGGKSLSMGFSSTLIPNPEIPEAYALKGWYDSKG 418
Query: 203 Q---VLSQLQDSGMIYVEEDLLRQTDGKTI-------EQIKDLTEKSYCVVLGTMKYIPD 252
+ ++ Q+ GM L + + I E + + + V + ++
Sbjct: 419 RNANFITLKQEPGMGGQSAASLTKFIAQRITIARAQAENLGRSEKGDFFSVKAAISFLKV 478
Query: 253 GMDWYYPACK---CSKKVYPA-DGMYFCEACNRHVASPLYKFRIQLRVMNSKNTATFVLF 308
++ YPAC C+KKV DG + CE C+ + A P +++ + + +++ N LF
Sbjct: 479 D-NFAYPACSNENCNKKVLEQPDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLF 537
Query: 309 DQEANSVV 316
D +A ++
Sbjct: 538 DDQAKQLL 545
>RFA1_XENLA (Q01588) Replication protein A 70 kDa DNA-binding
subunit (RP-A) (RF-A) (Replication factor-A protein 1)
(Single-stranded DNA-binding protein)
Length = 609
Score = 54.3 bits (129), Expect = 8e-07
Identities = 82/384 (21%), Positives = 156/384 (40%), Gaps = 71/384 (18%)
Query: 4 KIYVISTINPSKETWNIVAKVQ-----RLWLSPSLYGSKLPFSLDMVLVDSKGDKIHATV 58
K+ I+++NP + W + A+V R W S S KL FS++M VD G+ I AT
Sbjct: 174 KVVPIASLNPYQSKWTVRARVTNKGQIRTW-SNSRGEGKL-FSIEM--VDESGE-IRATA 228
Query: 59 RKTLIYRFQSLLTEGRVYQISFFGVGESGRDFRTTGHAFKINFQIHTFVCVVTNT-PINH 117
+F S++ +VY S + + + + + + +++ F T V ++ +
Sbjct: 229 FNEQADKFFSIIEVNKVYYFSKGTLKIANKQYTSVKNDYEMTFNSETSVIPCDDSADVPM 288
Query: 118 SPYSFMAISEIMFNDPDASFLIDVIGI---------LTGASGEHEFEKDGV-----SQKK 163
+ F++I E+ + D ++D+IG+ +T S E K + S K
Sbjct: 289 VQFEFVSIGELESKNKDT--VLDIIGVCKNVEEVTKVTIKSNNREVSKRSIHLMDSSGKV 346
Query: 164 ITLEL---DQDGIH----------------------NVYGATKILFNPAIDEATKIRERN 198
++ L D D +V ++ ++ NP I EA K+R
Sbjct: 347 VSTTLWGEDADKFDGSRQPVVAIKGARLSDFGGRSLSVLSSSTVMINPDIPEAFKLRAWF 406
Query: 199 DPASQV-----LSQLQDSGMIYVEEDLLRQTDGKTIEQIKDLT-----EKSYCVVLGTMK 248
D QV +S+ + G T+ K++ ++K+ + Y + T+
Sbjct: 407 DSEGQVVEGTSISESRGGGTGG------GNTNWKSLLEVKNENLGHGEKADYFTSVATIV 460
Query: 249 YIPDGMDWYY--PACKCSKKVY-PADGMYFCEACNRHVASPLYKFRIQLRVMNSKNTATF 305
Y+ Y P+ C+KKV +G++ CE CN+ + Y+ + + +
Sbjct: 461 YLRKENCLYQACPSQDCNKKVIDQQNGLFRCEKCNKEFPNFKYRLILSANIADFGENQWI 520
Query: 306 VLFDQEANSVVKKPCAILVDASNK 329
F + A S++ + L + K
Sbjct: 521 TCFQESAESILGQNATYLGELKEK 544
>RFA1_CAEEL (Q19537) Probable replication factor A 73 kDa subunit
(RP-A) (RF-A) (Replication factor-A protein 1)
Length = 655
Score = 47.4 bits (111), Expect = 1e-04
Identities = 82/382 (21%), Positives = 152/382 (39%), Gaps = 55/382 (14%)
Query: 46 LVDSKGDKIHATVRKTLIYRFQSLLTEGRVYQISFFGVGESGRDFRTTGHAFKINFQIHT 105
+ DS GD I T + + +TE Y +S V ++ + F TGH ++I + +
Sbjct: 263 ITDSNGDTIRCTAFNEVAESLYTTITENLSYYLSGGSVKQANKKFNNTGHDYEITLRSDS 322
Query: 106 FVCVVTNTPINHSPYSFMAISEIMFNDPDASFLIDVIGILTGASGEH-EF-EKDGVSQKK 163
+ + +P + ++ A LIDV+ ++ E EF K G S K
Sbjct: 323 II--EAGGELLAAPKLILKRVKLGEIAGYAGQLIDVLVVVEKMDPEATEFTSKAGKSLIK 380
Query: 164 ITLEL-DQDGIH---NVYG--ATKILFNPAIDEATKI-----RERND-------PASQVL 205
+EL D+ G ++G ATK L + + + RE N A++++
Sbjct: 381 REMELIDESGALVRLTLWGDEATKALVDDYVQKVIAFKGVIPREFNGGFSLGTGSATRII 440
Query: 206 SQLQDSGM--IY---------VEEDLLRQTDG------KTIEQI------KDLTEKSYCV 242
S + +G+ +Y E ++ Q G +TI + KD + Y
Sbjct: 441 SVPEIAGVSELYDWYANVKPTTEVKMMSQAAGGSNEAPRTIAGLQEMQFGKDSDKGDYAT 500
Query: 243 VLGTMKYIPDGMDWYYPACK---CSKKVYPADGMYFCEACNRHVASPLYKFRIQLRVMNS 299
V + + + + Y C C KK+ +G Y CE CN+++ + + +Q + +
Sbjct: 501 VKAMITRV-NPTNALYRGCASEGCQKKLVGENGDYRCEKCNKNMNKFKWLYMMQFELSDE 559
Query: 300 KNTATFVLFDQEANSVVKKPCAILVDASNKAGPDSPNVPSDILDLIDRTFLFKIEVSNSS 359
F A +V K A L + +++ PD N + L + + + + ++ +
Sbjct: 560 TGQVYVTAFGDSAAKIVGKSAAELGELHDES-PDEYNAIFERLQFVPKMWRLRCKMDS-- 616
Query: 360 NSIYEPSYRVKKFCYDPEIINQ 381
Y R K Y + +NQ
Sbjct: 617 ---YNEEVRQKMTVYGVDDVNQ 635
>RFA1_CRIFA (Q23696) Replication factor A 51 kDa subunit (RP-A)
(RF-A) (Replication factor-A protein 1) (Single-stranded
DNA-binding protein P51 subunit)
Length = 467
Score = 36.2 bits (82), Expect = 0.24
Identities = 38/160 (23%), Positives = 65/160 (39%), Gaps = 21/160 (13%)
Query: 18 WNIVAKVQ-----RLWLSPSLYGSKLPFSLDMVLVDSKGDKIHATVRKTLIYRFQSLLTE 72
W I A+V R W P+ G F+L +D I ATV + F+ L+
Sbjct: 23 WWIRARVADKSDIRTWNKPTSQGKLFSFTL----IDESA-AIRATVFNDAVDTFEPLVVN 77
Query: 73 GRVYQISFFGVGESGRDFRTTGHAFKINFQIHTFVCVV----TNTPINHSPYSFMAISEI 128
G+VY S V + R F + +++ F + V + + + Y+F+ I
Sbjct: 78 GQVYYFSGGQVKNANRRFSNVNNDYELTFDRASEVILARQDSSAAALPMQRYNFVPIE-- 135
Query: 129 MFNDPDASFLIDVIGILTGASGEHEFEKDGVSQKKITLEL 168
+ + L+DV+G++ E ++QK EL
Sbjct: 136 LLKQREVGSLVDVLGVVLKVD-----EISSITQKSTGREL 170
>FPG_MYCPU (Q98QQ1) Formamidopyrimidine-DNA glycosylase (EC
3.2.2.23) (FAPY-DNA glycosylase)
Length = 278
Score = 33.5 bits (75), Expect = 1.5
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 42/165 (25%)
Query: 139 IDVIGILTGASGEHEFEK--DGVSQKKITLE---LDQD---GIHNVYGATKILFNPAIDE 190
ID + + + GE +FE + +S+K + ++ LDQ GI N+Y A +ILF I
Sbjct: 129 IDPLAKVAQSPGEIDFETFYNRLSKKALAIKPTLLDQSIVSGIGNIY-ADEILFASKIHP 187
Query: 191 AT--------KIRERNDPASQVLSQLQDSGMIYVEE-DLLRQTDGKTIEQIKDLTEKS-Y 240
AT K++E A ++L + + G + + L + +G+ +K T+K +
Sbjct: 188 ATPSNLLSKDKVKEILKNAIEILDKSTELGGSSINSYESLNKKEGQYQNFLKVHTKKGEF 247
Query: 241 CVVLGTMKYIPDGMDWYYPACKCSKKV----YPADGMYFCEACNR 281
C+ KCS K+ + G YFC C +
Sbjct: 248 CI-------------------KCSSKIEKIKFKGRGTYFCPTCQK 273
>ODPA_RHIME (Q9R9N5) Pyruvate dehydrogenase E1 component, alpha
subunit (EC 1.2.4.1)
Length = 348
Score = 32.7 bits (73), Expect = 2.6
Identities = 17/46 (36%), Positives = 26/46 (55%), Gaps = 2/46 (4%)
Query: 189 DEATKIRERNDPASQVLSQLQDSGMIYVEEDLLRQTDGKTIEQIKD 234
DE K+R +DP QV ++L D G + ED L+Q D + + + D
Sbjct: 283 DEVQKMRSEHDPIEQVKARLTDKG--WATEDELKQIDKEVRDIVAD 326
>HI82_BACCR (Q81C43) Histidinol-phosphate aminotransferase 2 (EC
2.6.1.9) (Imidazole acetol-phosphate transaminase 2)
Length = 366
Score = 32.7 bits (73), Expect = 2.6
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 12/130 (9%)
Query: 5 IYVISTINPSKETWNIVAKVQRLWLSPSLYGSKLPFSLDMVLVDSKGDKIHATVRKTLIY 64
+ + S NP + ++ ++Q+ WL +LY +L ++ DK+H + + L
Sbjct: 32 VKLASNENPFGCSPRVLDELQKSWLEHALYPDGGATTLRQII----ADKLHVKMEQVLC- 86
Query: 65 RFQSLLTEGRVYQISFFGVGESGRDFRTTGHAFKINFQIHTFV--CVVTNTPINHSPYSF 122
S L E + QI V +G + T G F ++ H + C V +N+ Y
Sbjct: 87 --GSGLDE--IIQIISRAVLRAGDNIVTAGATFP-QYRHHAIIEGCEVKEVALNNGVYDL 141
Query: 123 MAISEIMFND 132
IS ++ ND
Sbjct: 142 EEISSVVDND 151
>GRP1_BUCAI (P57340) GrpE protein 1 (HSP-70 cofactor 1)
Length = 194
Score = 32.3 bits (72), Expect = 3.4
Identities = 17/43 (39%), Positives = 23/43 (52%)
Query: 180 TKILFNPAIDEATKIRERNDPASQVLSQLQDSGMIYVEEDLLR 222
T +LFNP+I +A I ND S + + SG I + LLR
Sbjct: 141 TNVLFNPSIHQAMSIHYTNDIISNQIVTVMQSGYILHKSRLLR 183
>BACA_BACLI (O68006) Bacitracin synthetase 1 (BA1) [Includes:
ATP-dependent isoleucine adenylase (IleA) (Isoleucine
activase); ATP-dependent cysteine adenylase (CysA)
(Cysteine activase); ATP-dependent leucine adenylase
(LeuA) (Leucine activase); ATP-depe
Length = 5255
Score = 32.3 bits (72), Expect = 3.4
Identities = 98/452 (21%), Positives = 170/452 (36%), Gaps = 75/452 (16%)
Query: 55 HATVRKTLIYRFQSLLTEGRVYQISFFGVGESGRDFRTTGHAFKINFQIHT--------- 105
H T+ L + +L + + FG SGR+ G + IHT
Sbjct: 4449 HVTINTVLQGIWGMILAKYKNTDEVVFGTVVSGREAPVDGIEEMVGLFIHTIPTRISFEG 4508
Query: 106 ---FVCVVTNTP---INHSPYSFMAISEI-MFNDPDASFLIDVIG---------ILTGAS 149
F V+ T I + YS+M +SEI + ++ + V+ + S
Sbjct: 4509 ARSFKEVLKKTQAESIESNRYSYMNLSEIQVLSEMKRELITHVMAFQNYAFDEELFRSQS 4568
Query: 150 GEHEFEKDGVSQKKIT-LELDQDGI-HNVYGATKILFNPAIDEATKIRERNDPASQVLSQ 207
GE FE +GV K+ T + G+ + K+ FN + + T I V Q
Sbjct: 4569 GETGFELEGVHGKERTNYNFNLTGVLEDEQLKLKLTFNENVYDNTIIETLEKHIITVAEQ 4628
Query: 208 LQDSGMIYVEEDLLRQTDGKTIEQIKDLTEKSYCVVLGTMKYIPDGMDWYYPACKCSKKV 267
V ED + +T+ I ++++ +L T G YP K ++
Sbjct: 4629 --------VAED-----ETQTLRDINLVSKEEQHRILHTFNDTKTG----YPKDKPLHEL 4671
Query: 268 YPADGMYFCEACNRHVASPLYKFRIQLRVMNSKNTATFVLFDQEANSVVKKPCAILVDAS 327
+ M + H A R+ R +N K T L +E AI+ D S
Sbjct: 4672 FEEQAMKTPD----HTALVFGAQRMTYRELNEKANQTARLL-REKGIGRGSIAAIIADRS 4726
Query: 328 N----------KAG----PDSPNVPSDILDLIDRTFLFKIEVSNSSNSIYEPSYRVKKFC 373
KAG P P P D +D + + + V+ ++S+ +P
Sbjct: 4727 FEMIIGIIGILKAGGTYLPIDPETPRDRIDYMLKNSGAALLVT--TDSLLKP-------- 4776
Query: 374 YDPEIINQFISNSPHLMYDESNPFYFLATPTSVLKQESINPEISKDLNV-EFAVAGELPN 432
+D + ++ S+ HL+ +E+ P ++ T+ + S + K + + ++ A + N
Sbjct: 4777 FDIKTVD-LCSDELHLLSEENLPRVNRSSDTAYIVYTSGSTGTPKGVVIPHYSAARVVKN 4835
Query: 433 TDSPPASAVDLGCDTQNLSFDGGSSDMSGIKL 464
T+ + D+ N SFDG D+ G L
Sbjct: 4836 TNYIDITGNDVILQLSNYSFDGSVFDIFGALL 4867
>OTX_STRPU (Q26417) Homeobox protein OTX (SPOTX)
Length = 371
Score = 32.0 bits (71), Expect = 4.4
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 407 LKQESINPEISKDLNVEFAVAGELPNTDSPPASAVDLG 444
+K ES +P+ SKDLNV+ L + SPP +D G
Sbjct: 12 IKMESHSPQDSKDLNVKPVKLERLGMSSSPPRLTIDCG 49
>YVRE_BACSU (O34940) Hypothetical protein yvrE
Length = 292
Score = 31.2 bits (69), Expect = 7.6
Identities = 45/177 (25%), Positives = 73/177 (40%), Gaps = 27/177 (15%)
Query: 379 INQFISNSPHLMYD-ESNPFYFLATPTSVLKQESINPEISKDLNVEFAVAGELPNTDSPP 437
I +S S L +D E N Y++ TPT + + S +P+ +G++ N + P
Sbjct: 138 IKDQVSTSNGLDWDRERNLMYYIDTPTQEIVRYSYDPQ-----------SGDVSNPE--P 184
Query: 438 ASAVDLGCDTQNLSFDGGSSDMSGIKLIAIYGDSVGSDTSPPKGGSVESPNAGKNKLKEK 497
D + L DG + D +G+ +A++G S P + + S + K
Sbjct: 185 VYRFD---QSDGLP-DGMTIDQNGMLWVALFGGSRVVHIDPFQKKEINSISV---PAKYV 237
Query: 498 MDCLKTARDEKLKTLHAEIIEAVVAPNDSDDNASAGGEVSPQSK----RPSPSAVDV 550
C RD LKTL+ + + + AGG S Q + +P P A DV
Sbjct: 238 TCCAFGGRD--LKTLYITTATEQMTEKERYEQPHAGGLFSAQLETGGYQPVPFAGDV 292
>SIL1_CYLFU (Q9SE35) Silaffin 1 precursor (natSil-1) [Contains:
Silaffin-1B; Silaffin-1A2; Silaffin-1A1]
Length = 265
Score = 31.2 bits (69), Expect = 7.6
Identities = 40/175 (22%), Positives = 71/175 (39%), Gaps = 21/175 (12%)
Query: 397 FYFLATPTSVLKQESINPEISKDLNVEFAVAGELPNTDSPPASAVDLGCDTQNLSFDGGS 456
F L T +SI + +L+ E + + +L + DS D D+ S D S
Sbjct: 7 FPLLFTAVGYCAAQSIADLAAANLSTEDSKSAQLISADSS-----DDASDSSVESVDAAS 61
Query: 457 SDMSGIKLIAIYGDSVGSDTSPPKGGSVESPNAGKNKLKEKMDCLKTARDEKLKTLHAEI 516
SD+SG + ++ D S G S+ES + + L+ D + + +E+L+ L ++
Sbjct: 62 SDVSGSSVESV-------DVS---GSSLESVDVSGSSLESVDDSSEDSEEEELRILSSKK 111
Query: 517 IEAVVAPNDSDDNASAGGEVSPQ------SKRPSPSAVDVKIGSVGSKKILKSVK 565
+ + + +G S + S S GS++IL S K
Sbjct: 112 SGSYYSYGTKKSGSYSGYSTKKSASRRILSSKKSGSYSGYSTKKSGSRRILSSKK 166
>MAT3_RAT (P43244) Matrin 3
Length = 845
Score = 31.2 bits (69), Expect = 7.6
Identities = 32/101 (31%), Positives = 43/101 (41%), Gaps = 11/101 (10%)
Query: 476 TSPPKGGSVESPNAGKNKLKEKMD--------CLKTARDEKL--KTLHAEIIEAVVAPND 525
T P G + +G++ K+ D L + DE L + A +IE+ + D
Sbjct: 618 TENPAEGKEQEEKSGEDGEKDTKDDQTEQEPSMLLESEDELLVDEEEAAALIESGSSVGD 677
Query: 526 SDDNASAGGEVSPQSKRPSPSAVDVKIGSVGSKKILKSVKK 566
D A+ G S K PS AV K S SKK LK V K
Sbjct: 678 ETDLANLGDVSSDGKKEPSDKAVK-KDASATSKKKLKKVDK 717
>ACON_RICPR (Q9ZCF4) Aconitate hydratase (EC 4.2.1.3) (Citrate
hydro-lyase) (Aconitase)
Length = 878
Score = 30.8 bits (68), Expect = 9.9
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 449 NLSFDGGSSDMSGIKLIAIYGDSVGSDTSPPKGGSVESPNAGKNKLKEKMDCL 501
N+ + D+ +++AI+GDS+ +D P G ++ A K +K ++ L
Sbjct: 635 NIGSEHSIKDIKSARILAIFGDSITTDHISPAGSISKNSPAAKYLIKHHIEPL 687
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.315 0.134 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,540,983
Number of Sequences: 164201
Number of extensions: 3083051
Number of successful extensions: 8033
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 8019
Number of HSP's gapped (non-prelim): 20
length of query: 569
length of database: 59,974,054
effective HSP length: 116
effective length of query: 453
effective length of database: 40,926,738
effective search space: 18539812314
effective search space used: 18539812314
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0346.9