BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0346.12
(1332 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 678 0.0
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 352 5e-96
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 159 6e-38
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 156 4e-37
YME4_YEAST (Q04711) Transposon Ty1 protein B 125 1e-27
YMD9_YEAST (Q03434) Transposon Ty1 protein B 123 3e-27
YJZ7_YEAST (P47098) Transposon Ty1 protein B 123 3e-27
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 120 2e-26
YMU0_YEAST (Q04670) Transposon Ty1 protein B 120 2e-26
YMT5_YEAST (Q04214) Transposon Ty1 protein B 119 7e-26
YJZ9_YEAST (P47100) Transposon Ty1 protein B 118 1e-25
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 105 1e-21
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 93 6e-18
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 69 9e-11
M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710... 66 7e-10
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 54 4e-06
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 49 1e-04
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 45 0.001
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 44 0.004
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 42 0.009
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 678 bits (1750), Expect = 0.0
Identities = 431/1355 (31%), Positives = 717/1355 (52%), Gaps = 77/1355 (5%)
Query: 12 IPKFDGH--YDYWSMTMENFLRSKEMWSLVDEGIPVLETGTTPASEEQMKAVEEAKLKDL 69
+ KF+G + W M + L + + ++D + MKA + A L D
Sbjct: 8 VAKFNGDNGFSTWQRRMRDLLIQQGLHKVLD---------VDSKKPDTMKAEDWADL-DE 57
Query: 70 KVKNYLFQAIGREILETILDKETSKEIWNSMKQKYHGSSKVKREQLQVMRREFDLLAMKE 129
+ + + + +++ I+D++T++ IW ++ Y SK +L ++++ L M E
Sbjct: 58 RAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLY--MSKTLTNKLY-LKKQLYALHMSE 114
Query: 130 GEKVDSFLGRTLIVVNKMKSNGETMEHSTVVSKILRSLTSKFNYVVCSIEESNDLSILSI 189
G S L ++ ++ + G +E +L SL S ++ + +I + + +
Sbjct: 115 GTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGK--TTIEL 172
Query: 190 DELHGSLLVHEQRMQGHQEEEHVLKVAQEDRSSRGRGRGAPRGGRGRGRGRQSLNKEVIE 249
++ +LL++E+ + + + L RS + R G RG+ + V
Sbjct: 173 KDVTSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSG-ARGKSKNRSKSRVRN 231
Query: 250 CYKCHRLGHFQYECPDWEKKVNY-----------AELEEEEELLLMAYVEP---HQTKKQ 295
CY C++ GHF+ +CP+ K A ++ + ++L E H + +
Sbjct: 232 CYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPE 291
Query: 296 EVWYLDSGCSNHMKGNKEWFLDLEEDFSRTVKLGNDTRMAVVAKGSIRMQLN-GITQVIS 354
W +D+ S+H ++ F TVK+GN + + G I ++ N G T V+
Sbjct: 292 SEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLK 351
Query: 355 DVYYIPELKNNLLSIGQLQEKGLAILIQDGTCKVFHPMRGVIMQTNMSGNIMFFLLASMA 414
DV ++P+L+ NL+S L G + ++ +++ ++ ++ A +
Sbjct: 352 DVRHVPDLRMNLISGIALDRDGYESYFANQKWRL--TKGSLVIAKGVARGTLYRTNAEIC 409
Query: 415 PKRSVCLQAEAVSQKEAHM*HCRFGHLNHKGLRTLSHKKMVVGLPSLESPEKICTTCLTG 474
Q E + H R GH++ KGL+ L+ K ++ + K C CL G
Sbjct: 410 QGELNAAQDEI----SVDLWHKRMGHMSEKGLQILAKKSLISYAKG--TTVKPCDYCLFG 463
Query: 475 KQHREPVPKRSLWRASKQLQLVHSDICGPIKPSWNSDKRYILSFIDDHTRKTWVYFLHEK 534
KQHR + S R L LV+SD+CGP++ +Y ++FIDD +RK WVY L K
Sbjct: 464 KQHRVSF-QTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTK 522
Query: 535 SEAFVKFKEYKAGVEKEIGAHITCLRTDRVCEFTSNEFDEFCRSQGINRQLTTTYTP*QN 594
+ F F+++ A VE+E G + LR+D E+TS EF+E+C S GI + T TP N
Sbjct: 523 DQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHN 582
Query: 595 GVAERKNRTIMNVVRSMLNEKQVPKVFWSEAVRWCVHIQNRCPIVAVENKTPEEAWSGEK 654
GVAER NRTI+ VRSML ++PK FW EAV+ ++ NR P V + + PE W+ ++
Sbjct: 583 GVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKE 642
Query: 655 PVVHYFRIFECVAHVHVPDQRRSKLDDKSKKCVFLGVSDESKAWRLYVPVSKKIIVSKDV 714
+ ++F C A HVP ++R+KLDDKS C+F+G DE +RL+ PV KK+I S+DV
Sbjct: 643 VSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDV 702
Query: 715 VFEEEESWDWGRIEEEIKLDILECGEEDQNEEENGRTDLNNLSSNSSSSSNSLPESLPNE 774
VF E E + E++K I+ N T N S+ S++ S P E
Sbjct: 703 VFRESEVRTAADMSEKVKNGII------PNFVTIPSTSNNPTSAESTTDEVSEQGEQPGE 756
Query: 775 PISNTPEELVEGRVVRERRVPSWFADY------ETREGLEE----NLNAMMMVTENDPVS 824
I E+L EG V E P+ + R +E + +++ + +P S
Sbjct: 757 VIEQ-GEQLDEG--VEEVEHPTQGEEQHQPLRRSERPRVESRRYPSTEYVLISDDREPES 813
Query: 825 FGEAV---KNKKWRDAMSAEIESIERNQSWELTVLPKGVKPIGVKWVFKTKLNEDGDVEK 881
E + + + AM E+ES+++N +++L LPKG +P+ KWVFK K + D + +
Sbjct: 814 LKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVR 873
Query: 882 FKARLVAKGYAQRHEVDYTEVFAPVARLDTIRVILEVAAQFSWEVFQLDVKSAFLHGELK 941
+KARLV KG+ Q+ +D+ E+F+PV ++ +IR IL +AA EV QLDVK+AFLHG+L+
Sbjct: 874 YKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLE 933
Query: 942 EEVFVQQPKGFIRKGEEDKVYRLKKALYGLKQALRAWYSRIEAYFVREDFERCPSEH-IL 1000
EE++++QP+GF G++ V +L K+LYGLKQA R WY + +++ + + + S+ +
Sbjct: 934 EEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVY 993
Query: 1001 FTKSKGGRILIVSLYVDDLIFTGNDRVMCDEFKSSMMLEFDMSDLGKMKYFLGVEV--KQ 1058
F + +I+ LYVDD++ G D+ + + K + FDM DLG + LG+++ ++
Sbjct: 994 FKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRER 1053
Query: 1059 C*DGIFIC*RRYARDVLARFDMRDSNAVKNPTVPGTKLSKDEGGVRVDE------TLFKQ 1112
+++ +Y VL RF+M+++ V P KLSK V+E +
Sbjct: 1054 TSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSS 1113
Query: 1113 VVGSLMYLTV-TRPDLMYGVSLISRFMSSPTMSHWLAAKRILRYLKGTTDLGIFYKKGGS 1171
VGSLMY V TRPD+ + V ++SRF+ +P HW A K ILRYL+GTT + + GGS
Sbjct: 1114 AVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCF--GGS 1171
Query: 1172 NMKLMAFPDSDYAGDLDDRRSTSRFVFMLGSGVVSWSSKKQYVVALSTTEAEYIAAALCA 1231
+ L + D+D AGD+D+R+S++ ++F G +SW SK Q VALSTTEAEYIAA
Sbjct: 1172 DPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETG 1231
Query: 1232 CQCVWLIRVLEKIGVEEKTSTEIMCDNSFTIQLSKNPVFHGKSKHIDVRFHFLRDLVNDG 1291
+ +WL R L+++G+ +K + CD+ I LSKN ++H ++KHIDVR+H++R++V+D
Sbjct: 1232 KEMIWLKRFLQELGLHQKEYV-VYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDE 1290
Query: 1292 VIKLSYCNSQDQIADIMTKPIKLEQFEKLRGMLGV 1326
+K+ ++ + AD++TK + +FE + ++G+
Sbjct: 1291 SLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 352 bits (902), Expect = 5e-96
Identities = 205/599 (34%), Positives = 335/599 (55%), Gaps = 20/599 (3%)
Query: 741 EDQNEEENGRTDLNNLSSNSSSSSNSLPESLPNEPISNTPEELVEGRVVRERRVPSWFAD 800
+D E G + N S S ++ L E + P N E++ R R + P +
Sbjct: 813 DDHLNESKGSGNPNE--SRESETAEHLKEIGIDNPTKNDGIEIINRRSERLKTKPQISYN 870
Query: 801 YETREGLEENLNAMMMVTENDPVSFGEAV---KNKKWRDAMSAEIESIERNQSWELTVLP 857
E + LNA + + P SF E W +A++ E+ + + N +W +T P
Sbjct: 871 EEDNSLNKVVLNAHTIFNDV-PNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRP 929
Query: 858 KGVKPIGVKWVFKTKLNEDGDVEKFKARLVAKGYAQRHEVDYTEVFAPVARLDTIRVILE 917
+ + +WVF K NE G+ ++KARLVA+G+ Q++++DY E FAPVAR+ + R IL
Sbjct: 930 ENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILS 989
Query: 918 VAAQFSWEVFQLDVKSAFLHGELKEEVFVQQPKGFIRKGEEDKVYRLKKALYGLKQALRA 977
+ Q++ +V Q+DVK+AFL+G LKEE++++ P+G D V +L KA+YGLKQA R
Sbjct: 990 LVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI--SCNSDNVCKLNKAIYGLKQAARC 1047
Query: 978 WYSRIEAYFVREDFERCPSEHILFTKSKG--GRILIVSLYVDDLIFTGNDRVMCDEFKSS 1035
W+ E +F + ++ KG + V LYVDD++ D + FK
Sbjct: 1048 WFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRY 1107
Query: 1036 MMLEFDMSDLGKMKYFLGVEVKQC*DGIFIC*RRYARDVLARFDMRDSNAVKNP---TVP 1092
+M +F M+DL ++K+F+G+ ++ D I++ Y + +L++F+M + NAV P +
Sbjct: 1108 LMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKIN 1167
Query: 1093 GTKLSKDEGGVRVDETLFKQVVGSLMYLTV-TRPDLMYGVSLISRFMSSPTMSHWLAAKR 1151
L+ DE T + ++G LMY+ + TRPDL V+++SR+ S W KR
Sbjct: 1168 YELLNSDED----CNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKR 1223
Query: 1152 ILRYLKGTTDLGIFYKKG-GSNMKLMAFPDSDYAGDLDDRRSTSRFVF-MLGSGVVSWSS 1209
+LRYLKGT D+ + +KK K++ + DSD+AG DR+ST+ ++F M ++ W++
Sbjct: 1224 VLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNT 1283
Query: 1210 KKQYVVALSTTEAEYIAAALCACQCVWLIRVLEKIGVEEKTSTEIMCDNSFTIQLSKNPV 1269
K+Q VA S+TEAEY+A + +WL +L I ++ + +I DN I ++ NP
Sbjct: 1284 KRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPS 1343
Query: 1270 FHGKSKHIDVRFHFLRDLVNDGVIKLSYCNSQDQIADIMTKPIKLEQFEKLRGMLGVTE 1328
H ++KHID+++HF R+ V + VI L Y +++Q+ADI TKP+ +F +LR LG+ +
Sbjct: 1344 CHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGLLQ 1402
Score = 223 bits (568), Expect = 3e-57
Identities = 193/773 (24%), Positives = 356/773 (45%), Gaps = 77/773 (9%)
Query: 12 IPKFDGH-YDYWSMTMENFLRSKEMWSLVDEGIPVLETGTTPASEEQMKAVEEAKLKDLK 70
I FDG Y W + L +++ +VD +P ++ K E
Sbjct: 8 IKPFDGEKYAIWKFRIRALLAEQDVLKVVDGLMP-------NEVDDSWKKAERC------ 54
Query: 71 VKNYLFQAIGREILETILDKETSKEIWNSMKQKYHGSSKVKREQLQVMRREFDLLAMKEG 130
K+ + + + L T+++I ++ Y S QL + +R LL++K
Sbjct: 55 AKSTIIEYLSDSFLNFATSDITARQILENLDAVYERKSLAS--QLALRKR---LLSLKLS 109
Query: 131 EKVDSFLGRTLI---VVNKMKSNGETMEHSTVVSKILRSLTSKFNYVVCSIEESNDLSIL 187
++ S L I +++++ + G +E +S +L +L S ++ ++ +IE ++ + L
Sbjct: 110 SEM-SLLSHFHIFDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSEEN-L 167
Query: 188 SIDELHGSLLVHEQRMQGHQEE--EHVLKVAQEDRSSRGRGRGAPRGGRGRGRGRQSLNK 245
++ + LL E +++ + + V+ + ++ + + + +K
Sbjct: 168 TLAFVKNRLLDQEIKIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSK 227
Query: 246 EVIECYKCHRLGHFQYECPDWEKKVNYAELEEEEEL-------LLMAYVEPHQTKKQEV- 297
++C+ C R GH + +C +++ +N E E+++ + E + T +
Sbjct: 228 YKVKCHHCGREGHIKKDCFHYKRILNNKNKENEKQVQTATSHGIAFMVKEVNNTSVMDNC 287
Query: 298 -WYLDSGCSNHMKGNKEWFLDLEEDFSRTVKLGNDTRMAVVAKGS-IRMQLNGITQV--- 352
+ LDSG S+H+ ++ + D +V++ ++AV +G I GI ++
Sbjct: 288 GFVLDSGASDHLINDESLYTD-------SVEVVPPLKIAVAKQGEFIYATKRGIVRLRND 340
Query: 353 ----ISDVYYIPELKNNLLSIGQLQEKGLAILIQDGTCKVFHPMRGVIMQTNMSGNIMFF 408
+ DV + E NL+S+ +LQE G++I + V+ + M N+
Sbjct: 341 HEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGMLNNVPV- 399
Query: 409 LLASMAPKRSVCLQAEAVSQKEAH---M*HCRFGHLNHKGLRTLSHKKMVVG---LPSLE 462
+ QA +++ K + + H RFGH++ L + K M L +LE
Sbjct: 400 ----------INFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLE 449
Query: 463 SPEKICTTCLTGKQHREPVPK-RSLWRASKQLQLVHSDICGPIKPSWNSDKRYILSFIDD 521
+IC CL GKQ R P + + + L +VHSD+CGPI P DK Y + F+D
Sbjct: 450 LSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQ 509
Query: 522 HTRKTWVYFLHEKSEAFVKFKEYKAGVEKEIGAHITCLRTDRVCEFTSNEFDEFCRSQGI 581
T Y + KS+ F F+++ A E + L D E+ SNE +FC +GI
Sbjct: 510 FTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGI 569
Query: 582 NRQLTTTYTP*QNGVAERKNRTIMNVVRSMLNEKQVPKVFWSEAVRWCVHIQNRCPIVAV 641
+ LT +TP NGV+ER RTI R+M++ ++ K FW EAV ++ NR P A+
Sbjct: 570 SYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRAL 629
Query: 642 --ENKTPEEAWSGEKPVVHYFRIFECVAHVHVPDQRRSKLDDKSKKCVFLGVSDESKAWR 699
+KTP E W +KP + + R+F +VH+ + ++ K DDKS K +F+G E ++
Sbjct: 630 VDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKN-KQGKFDDKSFKSIFVGY--EPNGFK 686
Query: 700 LYVPVSKKIIVSKDVVFEEEESWDWGRIEEEIKLDILECGEEDQNEEENGRTD 752
L+ V++K IV++DVV +E + +K + + + ++E +N D
Sbjct: 687 LWDAVNEKFIVARDVVVDETNMVN----SRAVKFETVFLKDSKESENKNFPND 735
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 159 bits (401), Expect = 6e-38
Identities = 85/223 (38%), Positives = 129/223 (57%), Gaps = 2/223 (0%)
Query: 1014 LYVDDLIFTGNDRVMCDEFKSSMMLEFDMSDLGKMKYFLGVEVKQC*DGIFIC*RRYARD 1073
LYVDD++ TG+ + + + F M DLG + YFLG+++K G+F+ +YA
Sbjct: 5 LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64
Query: 1074 VLARFDMRDSNAVKNPTVPGTKLSKDEGGVRVDETLFKQVVGSLMYLTVTRPDLMYGVSL 1133
+L M D + P +P S D + F+ +VG+L YLT+TRPD+ Y V++
Sbjct: 65 ILNNAGMLDCKPMSTP-LPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 123
Query: 1134 ISRFMSSPTMSHWLAAKRILRYLKGTTDLGIFYKKGGSNMKLMAFPDSDYAGDLDDRRST 1193
+ + M PT++ + KR+LRY+KGT G++ K S + + AF DSD+AG RRST
Sbjct: 124 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKN-SKLNVQAFCDSDWAGCTSTRRST 182
Query: 1194 SRFVFMLGSGVVSWSSKKQYVVALSTTEAEYIAAALCACQCVW 1236
+ F LG ++SWS+K+Q V+ S+TE EY A AL A + W
Sbjct: 183 TGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 156 bits (394), Expect = 4e-37
Identities = 98/303 (32%), Positives = 156/303 (51%), Gaps = 4/303 (1%)
Query: 929 LDVKSAFLHGELKEEVFVQQPKGFIRKGEEDKVYRLKKALYGLKQALRAWYSRIEAYFVR 988
+DV +AFL+ + E ++V+QP GF+ + D V+ L +YGLKQA W I +
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 989 EDFERCPSEHILFTKSKGGRILIVSLYVDDLIFTGNDRVMCDEFKSSMMLEFDMSDLGKM 1048
F R EH L+ +S + + +YVDDL+ + D K + + M DLGK+
Sbjct: 61 IGFCRHEGEHGLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120
Query: 1049 KYFLGVEVKQC*DG-IFIC*RRYARDVLARFDMRDSNAVKNPTVPGTKLSKDEGGVRVDE 1107
FLG+ + Q +G I + + Y + ++ + P L + D
Sbjct: 121 DKFLGLNIHQSTNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180
Query: 1108 TLFKQVVGSLMYLTVT-RPDLMYGVSLISRFMSSPTMSHWLAAKRILRYLKGTTDLGIFY 1166
T ++ +VG L++ T RPD+ Y VSL+SRF+ P H +A+R+LRYL T + + Y
Sbjct: 181 TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY 240
Query: 1167 KKGGSNMKLMAFPDSDYAGDLDDRRSTSRFVFMLGSGVVSWSSKK-QYVVALSTTEAEYI 1225
+ GS + L + D+ + D ST +V +L V+WSSKK + V+ + +TEAEYI
Sbjct: 241 -RSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYI 299
Query: 1226 AAA 1228
A+
Sbjct: 300 TAS 302
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 125 bits (313), Expect = 1e-27
Identities = 130/543 (23%), Positives = 253/543 (45%), Gaps = 70/543 (12%)
Query: 820 NDPVSFGEAVKNK-KWRDAMSAEIESIERNQSWELT-------VLPKGVKPIGVKWVFKT 871
++ +++ + +K K K+ +A E+ + + +W+ + PK V I ++F
Sbjct: 808 DEAITYNKDIKEKEKYIEAYHKEVNQLLKMNTWDTDKYYDRKEIDPKRV--INSMFIFNR 865
Query: 872 KLNEDGDVEKFKARLVAKGYAQRHEVDYTEVFAPVARLDTIRVILEVAAQFSWEVFQLDV 931
K DG KAR VA+G Q + + + + + L +A ++ + QLD+
Sbjct: 866 K--RDGT---HKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDI 920
Query: 932 KSAFLHGELKEEVFVQQPKGFIRKGEEDKVYRLKKALYGLKQALRAWYSRIEAYFVRE-D 990
SA+L+ ++KEE++++ P G DK+ RLKK+LYGLKQ+ WY I++Y +++
Sbjct: 921 SSAYLYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCG 977
Query: 991 FERCPSEHILFTKSKGGRILIVSLYVDDLIFTGNDRVMCDEFKSSMMLEFD--MSDLG-- 1046
E +F S+ + + L+VDD+I D + +++ ++D + +LG
Sbjct: 978 MEEVRGWSCVFKNSQ----VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGES 1033
Query: 1047 --KMKY-FLGVEVKQC*DGIFIC*RRYARDVLARFDMRDSNAVKNP--TVP----GTKLS 1097
+++Y LG+E+K Y R + M +S K P VP G KLS
Sbjct: 1034 DNEIQYDILGLEIK------------YQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLS 1081
Query: 1098 K--------DEGGVRVDETLFKQVVGSLMYLT--------VTRPDLMYGVSLISRFMSSP 1141
D+ + +DE +K+ V + L R DL+Y ++ +++ + P
Sbjct: 1082 APGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFP 1141
Query: 1142 TMSHWLAAKRILRYLKGTTDLGIFYKKG---GSNMKLMAFPDSDYAGDLDDRRSTSRFVF 1198
+ +++++ T D + + K + KL+A D+ Y G+ +S ++
Sbjct: 1142 SRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIY 1200
Query: 1199 MLGSGVVSWSSKKQYVVALSTTEAEYIAAALCACQCVWLIRVLEKIGVEEKTSTEIMCDN 1258
+L V+ S K + STTEAE A + L +++++ ++ + ++ D+
Sbjct: 1201 LLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSHLVQELN-KKPITKGLLTDS 1259
Query: 1259 SFTIQ-LSKNPVFHGKSKHIDVRFHFLRDLVNDGVIKLSYCNSQDQIADIMTKPIKLEQF 1317
TI + N +++ + LRD V+ + + Y ++ IAD+MTKP+ ++ F
Sbjct: 1260 KSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTF 1319
Query: 1318 EKL 1320
+ L
Sbjct: 1320 KLL 1322
Score = 87.8 bits (216), Expect = 2e-16
Identities = 81/312 (25%), Positives = 139/312 (43%), Gaps = 28/312 (8%)
Query: 468 CTTCLTGK--QHREPVPKRSLWRASKQ-LQLVHSDICGPIKPSWNSDKRYILSFIDDHTR 524
C CL GK +HR R ++ S + Q +H+DI GP+ S Y +SF D+ T+
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 525 KTWVYFLHEKSEAFVK--FKEYKAGVEKEIGAHITCLRTDRVCEFTSNEFDEFCRSQGIN 582
WVY LH++ E + F A ++ + A + ++ DR E+T+ +F GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 583 RQLTTTYTP*QNGVAERKNRTIMNVVRSMLNEKQVPKVFWSEAVRWCVHIQNRCPIVAVE 642
TTT +GVAER NRT+++ R+ L +P W A+ + ++N +
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 643 NKTPEEAWSGEKPVVHYFRIFE-CVAHVHVPDQRRSKLDDKSKKCVFLGVSDESKAWRLY 701
+ A + + + + H P+ SK+ + L S S + +Y
Sbjct: 390 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIY 446
Query: 702 VPVSKKII-VSKDVVFEEEESWDWGRIEEEIKLDILECGEEDQNEEENGRTDLNNLSSNS 760
+P KK + + V+ + +ES R+ ++ D L E DLN L+++
Sbjct: 447 LPSLKKTVDTTNYVILQGKES----RL-DQFNYDALTFDE-----------DLNRLTASY 490
Query: 761 SS--SSNSLPES 770
S +SN + +S
Sbjct: 491 QSFIASNEIQQS 502
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 123 bits (309), Expect = 3e-27
Identities = 130/543 (23%), Positives = 254/543 (45%), Gaps = 70/543 (12%)
Query: 820 NDPVSFGEAVKNK-KWRDAMSAEIESIERNQSWELT-------VLPKGVKPIGVKWVFKT 871
++ +++ + +K K K+ +A E+ + + ++W+ + PK V I ++F
Sbjct: 808 DEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRV--INSMFIFNK 865
Query: 872 KLNEDGDVEKFKARLVAKGYAQRHEVDYTEVFAPVARLDTIRVILEVAAQFSWEVFQLDV 931
K DG KAR VA+G Q + + + + + L +A ++ + QLD+
Sbjct: 866 K--RDGT---HKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDI 920
Query: 932 KSAFLHGELKEEVFVQQPKGFIRKGEEDKVYRLKKALYGLKQALRAWYSRIEAYFVRE-D 990
SA+L+ ++KEE++++ P G DK+ RLKK+LYGLKQ+ WY I++Y +++
Sbjct: 921 SSAYLYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCG 977
Query: 991 FERCPSEHILFTKSKGGRILIVSLYVDDLIFTGNDRVMCDEFKSSMMLEFD--MSDLG-- 1046
E +F S+ + + L+VDD+I D + +++ ++D + +LG
Sbjct: 978 MEEVRGWSCVFKNSQ----VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGES 1033
Query: 1047 --KMKY-FLGVEVKQC*DGIFIC*RRYARDVLARFDMRDSNAVKNP--TVP----GTKLS 1097
+++Y LG+E+K Y R + M +S K P VP G KLS
Sbjct: 1034 DNEIQYDILGLEIK------------YQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLS 1081
Query: 1098 K--------DEGGVRVDETLFKQVVGSLMYLT--------VTRPDLMYGVSLISRFMSSP 1141
D+ + +DE +K+ V + L R DL+Y ++ +++ + P
Sbjct: 1082 APGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFP 1141
Query: 1142 TMSHWLAAKRILRYLKGTTDLGIFYKKG---GSNMKLMAFPDSDYAGDLDDRRSTSRFVF 1198
+ +++++ T D + + K + KL+A D+ Y G+ +S ++
Sbjct: 1142 SRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIY 1200
Query: 1199 MLGSGVVSWSSKKQYVVALSTTEAEYIAAALCACQCVWLIRVLEKIGVEEKTSTEIMCDN 1258
+L V+ S K + STTEAE A + L +++++ ++ ++ D+
Sbjct: 1201 LLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELN-KKPIIKGLLTDS 1259
Query: 1259 SFTIQLSKNPVFHG-KSKHIDVRFHFLRDLVNDGVIKLSYCNSQDQIADIMTKPIKLEQF 1317
TI + K+ +++ + LRD V+ + + Y ++ IAD+MTKP+ ++ F
Sbjct: 1260 RSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTF 1319
Query: 1318 EKL 1320
+ L
Sbjct: 1320 KLL 1322
Score = 87.8 bits (216), Expect = 2e-16
Identities = 81/312 (25%), Positives = 139/312 (43%), Gaps = 28/312 (8%)
Query: 468 CTTCLTGK--QHREPVPKRSLWRASKQ-LQLVHSDICGPIKPSWNSDKRYILSFIDDHTR 524
C CL GK +HR R ++ S + Q +H+DI GP+ S Y +SF D+ T+
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 525 KTWVYFLHEKSEAFVK--FKEYKAGVEKEIGAHITCLRTDRVCEFTSNEFDEFCRSQGIN 582
WVY LH++ E + F A ++ + A + ++ DR E+T+ +F GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 583 RQLTTTYTP*QNGVAERKNRTIMNVVRSMLNEKQVPKVFWSEAVRWCVHIQNRCPIVAVE 642
TTT +GVAER NRT+++ R+ L +P W A+ + ++N +
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 643 NKTPEEAWSGEKPVVHYFRIFE-CVAHVHVPDQRRSKLDDKSKKCVFLGVSDESKAWRLY 701
+ A + + + + H P+ SK+ + L S S + +Y
Sbjct: 390 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIY 446
Query: 702 VPVSKKII-VSKDVVFEEEESWDWGRIEEEIKLDILECGEEDQNEEENGRTDLNNLSSNS 760
+P KK + + V+ + +ES R+ ++ D L E DLN L+++
Sbjct: 447 LPSLKKTVDTTNYVILQGKES----RL-DQFNYDALTFDE-----------DLNRLTASY 490
Query: 761 SS--SSNSLPES 770
S +SN + +S
Sbjct: 491 QSFIASNEIQQS 502
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 123 bits (309), Expect = 3e-27
Identities = 131/543 (24%), Positives = 253/543 (46%), Gaps = 70/543 (12%)
Query: 820 NDPVSFGEAVKNK-KWRDAMSAEIESIERNQSWELT-------VLPKGVKPIGVKWVFKT 871
++ +++ + +K K K+ +A E+ + + ++W+ + PK V I ++F
Sbjct: 1235 DEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRV--INSMFIFNK 1292
Query: 872 KLNEDGDVEKFKARLVAKGYAQRHEVDYTEVFAPVARLDTIRVILEVAAQFSWEVFQLDV 931
K DG KAR VA+G Q + T + + + L +A ++ + QLD+
Sbjct: 1293 K--RDGT---HKARFVARGDIQHPDTYDTGMQSNTVHHYALMTSLSLALDNNYYITQLDI 1347
Query: 932 KSAFLHGELKEEVFVQQPKGFIRKGEEDKVYRLKKALYGLKQALRAWYSRIEAYFVRE-D 990
SA+L+ ++KEE++++ P G DK+ RLKK+ YGLKQ+ WY I++Y +++
Sbjct: 1348 SSAYLYADIKEELYIRPPP---HLGMNDKLIRLKKSHYGLKQSGANWYETIKSYLIKQCG 1404
Query: 991 FERCPSEHILFTKSKGGRILIVSLYVDDLIFTGNDRVMCDEFKSSMMLEFD--MSDLG-- 1046
E +F S+ + + L+VDD+I D + +++ ++D + +LG
Sbjct: 1405 MEEVRGWSCVFKNSQ----VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGES 1460
Query: 1047 --KMKY-FLGVEVKQC*DGIFIC*RRYARDVLARFDMRDSNAVKNP--TVP----GTKLS 1097
+++Y LG+E+K Y R + M +S K P VP G KLS
Sbjct: 1461 DNEIQYDILGLEIK------------YQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLS 1508
Query: 1098 K--------DEGGVRVDETLFKQVVGSLMYLT--------VTRPDLMYGVSLISRFMSSP 1141
D+ + +DE +K+ V + L R DL+Y ++ +++ + P
Sbjct: 1509 APGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFP 1568
Query: 1142 TMSHWLAAKRILRYLKGTTDLGIFYKKG---GSNMKLMAFPDSDYAGDLDDRRSTSRFVF 1198
+ +++++ T D + + K + KL+A D+ Y G+ +S +F
Sbjct: 1569 SRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIF 1627
Query: 1199 MLGSGVVSWSSKKQYVVALSTTEAEYIAAALCACQCVWLIRVLEKIGVEEKTSTEIMCDN 1258
+L V+ S K + STTEAE A + L +++++ ++ ++ D+
Sbjct: 1628 LLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELN-KKPIIKGLLTDS 1686
Query: 1259 SFTIQLSKNPVFHG-KSKHIDVRFHFLRDLVNDGVIKLSYCNSQDQIADIMTKPIKLEQF 1317
TI + K+ +++ + LRD V+ + + Y ++ IAD+MTKP+ ++ F
Sbjct: 1687 RSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTF 1746
Query: 1318 EKL 1320
+ L
Sbjct: 1747 KLL 1749
Score = 89.0 bits (219), Expect = 8e-17
Identities = 82/312 (26%), Positives = 139/312 (44%), Gaps = 28/312 (8%)
Query: 468 CTTCLTGK--QHREPVPKRSLWRASKQ-LQLVHSDICGPIKPSWNSDKRYILSFIDDHTR 524
C CL GK +HR R ++ S + Q +H+DI GP+ S Y +SF D+ T+
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 696
Query: 525 KTWVYFLHEKSEAFVK--FKEYKAGVEKEIGAHITCLRTDRVCEFTSNEFDEFCRSQGIN 582
WVY LH++ E + F A ++ + A + ++ DR E+T+ +F GI
Sbjct: 697 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 756
Query: 583 RQLTTTYTP*QNGVAERKNRTIMNVVRSMLNEKQVPKVFWSEAVRWCVHIQNRCPIVAVE 642
TTT +GVAER NRT+++ R+ L +P W A+ + ++N +
Sbjct: 757 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 816
Query: 643 NKTPEEAWSGEKPVVHYFRIFE-CVAHVHVPDQRRSKLDDKSKKCVFLGVSDESKAWRLY 701
+ A + + + + H P+ SK+ + L S S + +Y
Sbjct: 817 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIY 873
Query: 702 VPVSKKII-VSKDVVFEEEESWDWGRIEEEIKLDILECGEEDQNEEENGRTDLNNLSSNS 760
+P KK + + V+ + +ES R+ ++ D L E DLN L+++
Sbjct: 874 LPSLKKTVDTTNYVILQGKES----RL-DQFNYDALTFDE-----------DLNRLTASY 917
Query: 761 SS--SSNSLPES 770
S +SN + ES
Sbjct: 918 QSFIASNEIQES 929
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 120 bits (302), Expect = 2e-26
Identities = 142/626 (22%), Positives = 273/626 (42%), Gaps = 82/626 (13%)
Query: 743 QNEEENGRTDLNNLSSNSSSSSNSLPESLPNEPISNTPEELVEGRVVRERRVPSWFADYE 802
Q G D +N+ + + S SL ++ +S R + R
Sbjct: 1173 QTNSSLGGMDDSNVLTTTKSKKRSLEDNETEIEVSRDTWNNKNMRSLEPPRSKKRINLIA 1232
Query: 803 TREGLEENLNAMMMVTENDPVSFGEAVKNK-KWRDAMSAEIESIERNQSWELT------- 854
+G++ + ++ +++ + K K ++ +A EI + + +W+
Sbjct: 1233 AIKGVKSIKPVRTTLRYDEAITYNKDNKEKDRYVEAYHKEISQLLKMNTWDTNKYYDRND 1292
Query: 855 VLPKGVKPIGVKWVFKTKLNEDGDVEKFKARLVAKGYAQRHEVDYTEVFAPVARLDTIRV 914
+ PK K I ++F K DG KAR VA+G Q + +++ + +
Sbjct: 1293 IDPK--KVINSMFIFNKK--RDGT---HKARFVARGDIQHPDTYDSDMQSNTVHHYALMT 1345
Query: 915 ILEVAAQFSWEVFQLDVKSAFLHGELKEEVFVQQPKGFIRKGEEDKVYRLKKALYGLKQA 974
L +A + + QLD+ SA+L+ ++KEE++++ P G DK+ RL+K+LYGLKQ+
Sbjct: 1346 SLSIALDNDYYITQLDISSAYLYADIKEELYIRPPP---HLGLNDKLLRLRKSLYGLKQS 1402
Query: 975 LRAWYSRIEAYFVR-EDFERCPSEHILFTKSKGGRILIVSLYVDDLIFTGNDRVMCDEFK 1033
WY I++Y + D + +F S+ + + L+VDD+I D +
Sbjct: 1403 GANWYETIKSYLINCCDMQEVRGWSCVFKNSQ----VTICLFVDDMILFSKDLNANKKII 1458
Query: 1034 SSMMLEFD--MSDLG----KMKY-FLGVEVKQC*DGIFIC*RRYARDVLARFDMRDSNAV 1086
+++ ++D + +LG +++Y LG+E+K Y R + M S
Sbjct: 1459 TTLKKQYDTKIINLGESDNEIQYDILGLEIK------------YQRSKYMKLGMEKSLTE 1506
Query: 1087 KNPTV----------------PGTKLSKDEGGVRVDETLFKQVVGSLMYLT--------V 1122
K P + PG + +DE + +DE +K+ V + L
Sbjct: 1507 KLPKLNVPLNPKGKKLRAPGQPGHYIDQDE--LEIDEDEYKEKVHEMQKLIGLASYVGYK 1564
Query: 1123 TRPDLMYGVSLISRFMSSPTMSHWLAAKRILRYLKGTTDLGIFYKKG---GSNMKLMAFP 1179
R DL+Y ++ +++ + P+ +++++ T D + + K + KL+A
Sbjct: 1565 FRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTKPDNKLVAIS 1624
Query: 1180 DSDYAGDLDDRRSTSRFVFMLGSGVVSWSSKKQYVVALSTTEAEYIAAALCACQCVWLIR 1239
D+ Y G+ +S +F+L V+ S K + STTEAE A + + + L+
Sbjct: 1625 DASY-GNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAVS----EAIPLLN 1679
Query: 1240 VLEKIGVEEKTSTEI----MCDNSFTIQLSKNPVFHG-KSKHIDVRFHFLRDLVNDGVIK 1294
L + V+E I + D+ TI + K+ +++ + LRD V+ +
Sbjct: 1680 NLSHL-VQELNKKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLY 1738
Query: 1295 LSYCNSQDQIADIMTKPIKLEQFEKL 1320
+ Y ++ IAD+MTKP+ ++ F+ L
Sbjct: 1739 VYYIETKKNIADVMTKPLPIKTFKLL 1764
Score = 113 bits (283), Expect = 3e-24
Identities = 152/756 (20%), Positives = 295/756 (38%), Gaps = 84/756 (11%)
Query: 86 TILDKETSKEIWNSMKQKYHGSSKVKREQLQVMRREFDLLAMKEGEKVDSFLGRTLIVVN 145
T+L K SK N+ + K + + + E+D D+F ++
Sbjct: 246 TVLCKSVSKMQTNNQELK---------DWIALANLEYD-----GSTSADTFEITVSTIIQ 291
Query: 146 KMKSNGETMEHSTVVSKILRSLTSKFNYVVCSIEESNDLSI--------LSIDELHGSLL 197
++K N + IL+ L+ F Y+ ++ + L DE L
Sbjct: 292 RLKENNINVSDRLACQLILKGLSGDFKYLRNQYRTKTNMKLSQLFAEIQLIYDENKIMNL 351
Query: 198 VHEQRMQGHQEEEHVLKVAQEDRSSRGRGRGAPRGGRGRGRGRQSLNKEVIECYKCHRLG 257
+ + H E ++V + + +++ R R + R ++ N +
Sbjct: 352 NKPSQYKQHSEYKNVSRTSPNTTNTKVTTRNYQRTNSSKPRAAKAHNIATSSKFSRVNND 411
Query: 258 HFQYECPDWEKKVNYAELEEEEELLL---MAYVEPHQT-----KKQEVWYLDSGCSNHMK 309
H E V+ L ++ EL L +P T + + +DSG S +
Sbjct: 412 HIN------ESTVSSQYLSDDNELSLGQQQKESKPTHTIDSNDELPDHLLIDSGASQTLV 465
Query: 310 GNKEWFLDLEEDFSRTVKLGNDTRMAVVAKGSIRMQLNGITQVISDVYYIPELKNNLLSI 369
+ + + + + + A G++ T+ + P + +LLS+
Sbjct: 466 RSAHYLHHATPNSEINIVDAQKQDIPINAIGNLHFNFQNGTKTSIKALHTPNIAYDLLSL 525
Query: 370 GQLQEKGLAILIQDGTCKVFHPMRGVIMQTNMSGNIMF-----FLLASMAPKRSV--CLQ 422
+L + + T + G ++ + + +L+ S K ++ +
Sbjct: 526 SELANQNITACFTRNTLE---RSDGTVLAPIVKHGDFYWLSKKYLIPSHISKLTINNVNK 582
Query: 423 AEAVSQKEAHM*HCRFGHLNHKGLRTLSHKKMVVGLPSLE-----SPEKICTTCLTGK-- 475
+++V++ + H GH N + ++ K V L + + C CL GK
Sbjct: 583 SKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKST 642
Query: 476 QHREPVPKRSLWRASKQ-LQLVHSDICGPIKPSWNSDKRYILSFIDDHTRKTWVYFLHEK 534
+HR R ++ S + Q +H+DI GP+ S Y +SF D+ TR WVY LH++
Sbjct: 643 KHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDR 702
Query: 535 SEAFVK--FKEYKAGVEKEIGAHITCLRTDRVCEFTSNEFDEFCRSQGINRQLTTTYTP* 592
E + F A ++ + A + ++ DR E+T+ +F ++GI TTT
Sbjct: 703 REESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSR 762
Query: 593 QNGVAERKNRTIMNVVRSMLNEKQVPKVFWSEAVRWCVHIQNRCPIVAVENKTPEEAWSG 652
+GVAER NRT++N R++L+ +P W AV + I+N + + A
Sbjct: 763 AHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKNDKSARQHAGLA 822
Query: 653 EKPVVHYFRIFE-CVAHVHVPDQRRSKLDDKSKKCVFLGVSDESKAWRLYVPVSKKII-V 710
+ + + + H PD SK+ + L S S + +Y+P KK +
Sbjct: 823 GLDITTILPFGQPVIVNNHNPD---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDT 879
Query: 711 SKDVVFEEEES------WDWGRIEEEI------KLDILECGEEDQNEEENGRTDLNNLSS 758
+ V+ ++++S +D ++++ +E E +Q+ ++N +D + S
Sbjct: 880 TNYVILQDKQSKLDQFNYDTLTFDDDLNRLTAHNQSFIEQNETEQSYDQNTESDHDYQSE 939
Query: 759 ---------NSSSSSNSLPESLPNEPIS--NTPEEL 783
N SS + P L EP+ P+E+
Sbjct: 940 IEINSDPLVNDFSSQSINPLQLDKEPVQKVRAPKEV 975
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 120 bits (301), Expect = 2e-26
Identities = 129/548 (23%), Positives = 257/548 (46%), Gaps = 80/548 (14%)
Query: 820 NDPVSFGEAVKNK-KWRDAMSAEIESIERNQSWELT-------VLPKGVKPIGVKWVFKT 871
++ +++ + +K K K+ A E+ + + ++W+ + PK V I ++F
Sbjct: 808 DEAITYNKDIKEKEKYIQAYHKEVNQLLKMKTWDTDRYYDRKEIDPKRV--INSMFIFNR 865
Query: 872 KLNEDGDVEKFKARLVAKGYAQRHEVDYTEVFAPVARLDTIR-----VILEVAAQFSWEV 926
K DG KAR VA+G ++ + + + P + +T+ L +A ++ +
Sbjct: 866 K--RDGT---HKARFVARG-----DIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYI 915
Query: 927 FQLDVKSAFLHGELKEEVFVQQPKGFIRKGEEDKVYRLKKALYGLKQALRAWYSRIEAYF 986
QLD+ SA+L+ ++KEE++++ P G DK+ RLKK+LYGLKQ+ WY I++Y
Sbjct: 916 TQLDISSAYLYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQSGANWYETIKSYL 972
Query: 987 VRE-DFERCPSEHILFTKSKGGRILIVSLYVDDLIFTGNDRVMCDEFKSSMMLEFD--MS 1043
+++ E +F S+ + + L+VDD+I D + +++ ++D +
Sbjct: 973 IKQCGMEEVRGWSCVFKNSQ----VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKII 1028
Query: 1044 DLG----KMKY-FLGVEVKQC*DGIFIC*RRYARDVLARFDMRDSNAVKNP--TVP---- 1092
+LG +++Y LG+E+K Y R + M +S K P VP
Sbjct: 1029 NLGESDNEIQYDILGLEIK------------YQRGKYMKLGMENSLTEKIPKLNVPLNPK 1076
Query: 1093 GTKLSK--------DEGGVRVDETLFK-------QVVGSLMYLTVT-RPDLMYGVSLISR 1136
G KLS D+ + ++E +K +++G Y+ R DL+Y ++ +++
Sbjct: 1077 GRKLSAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQ 1136
Query: 1137 FMSSPTMSHWLAAKRILRYLKGTTDLGIFYKKG---GSNMKLMAFPDSDYAGDLDDRRST 1193
+ P+ +++++ T D + + K KL+ D+ Y G+ +S
Sbjct: 1137 HILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQ 1195
Query: 1194 SRFVFMLGSGVVSWSSKKQYVVALSTTEAEYIAAALCACQCVWLIRVLEKIGVEEKTSTE 1253
+++L V+ S K + STTEAE A + L +++++ ++ +
Sbjct: 1196 IGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSHLVQELN-KKPITKG 1254
Query: 1254 IMCDNSFTIQ-LSKNPVFHGKSKHIDVRFHFLRDLVNDGVIKLSYCNSQDQIADIMTKPI 1312
++ D+ TI + N +++ + LRD V+ + + Y ++ IAD+MTKP+
Sbjct: 1255 LLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPL 1314
Query: 1313 KLEQFEKL 1320
++ F+ L
Sbjct: 1315 PIKTFKLL 1322
Score = 87.8 bits (216), Expect = 2e-16
Identities = 81/312 (25%), Positives = 139/312 (43%), Gaps = 28/312 (8%)
Query: 468 CTTCLTGK--QHREPVPKRSLWRASKQ-LQLVHSDICGPIKPSWNSDKRYILSFIDDHTR 524
C CL GK +HR R ++ S + Q +H+DI GP+ S Y +SF D+ T+
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 525 KTWVYFLHEKSEAFVK--FKEYKAGVEKEIGAHITCLRTDRVCEFTSNEFDEFCRSQGIN 582
WVY LH++ E + F A ++ + A + ++ DR E+T+ +F GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 583 RQLTTTYTP*QNGVAERKNRTIMNVVRSMLNEKQVPKVFWSEAVRWCVHIQNRCPIVAVE 642
TTT +GVAER NRT+++ R+ L +P W A+ + ++N +
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 643 NKTPEEAWSGEKPVVHYFRIFE-CVAHVHVPDQRRSKLDDKSKKCVFLGVSDESKAWRLY 701
+ A + + + + H P+ SK+ + L S S + +Y
Sbjct: 390 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIY 446
Query: 702 VPVSKKII-VSKDVVFEEEESWDWGRIEEEIKLDILECGEEDQNEEENGRTDLNNLSSNS 760
+P KK + + V+ + +ES R+ ++ D L E DLN L+++
Sbjct: 447 LPSLKKTVDTTNYVILQGKES----RL-DQFNYDALTFDE-----------DLNRLTASY 490
Query: 761 SS--SSNSLPES 770
S +SN + +S
Sbjct: 491 QSFIASNEIQQS 502
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 119 bits (297), Expect = 7e-26
Identities = 131/547 (23%), Positives = 250/547 (44%), Gaps = 78/547 (14%)
Query: 820 NDPVSFGEAVKNK-KWRDAMSAEIESIERNQSWELT-------VLPKGVKPIGVKWVFKT 871
++ +++ + +K K K+ +A E+ + + ++W+ + PK V I ++F
Sbjct: 808 DEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDKYYDRKEIDPKRV--INSMFIFNR 865
Query: 872 KLNEDGDVEKFKARLVAKGYAQRHEVDYTEVFAPVARLDTIRVILEVAAQFSWEVFQLDV 931
K DG KAR VA+G Q + + + + + L +A ++ + QLD+
Sbjct: 866 K--RDGT---HKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDI 920
Query: 932 KSAFLHGELKEEVFVQQPKGFIRKGEEDKVYRLKKALYGLKQALRAWYSRIEAYFVRE-D 990
SA+L+ ++KEE++++ P G DK+ RLKK+LYGLKQ+ WY I++Y +++
Sbjct: 921 SSAYLYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCG 977
Query: 991 FERCPSEHILFTKSKGGRILIVSLYVDDLI-----FTGNDRVMCDEFK---SSMMLEFDM 1042
E +F S+ + + L+VDD++ N R++ D+ K + ++
Sbjct: 978 MEEVRGWSCVFENSQ----VTICLFVDDMVLFSKNLNSNKRII-DKLKMQYDTKIINLGE 1032
Query: 1043 SDLGKMKYFLGVEVKQC*DGIFIC*RRYARDVLARFDMRDSNAVKNP--TVP----GTKL 1096
SD LG+E+K Y R + M +S K P VP G KL
Sbjct: 1033 SDEEIQYDILGLEIK------------YQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKL 1080
Query: 1097 SK--------DEGGVRVDETLFK-------QVVGSLMYLTVT-RPDLMYGVSLISRFMSS 1140
S D+ + ++E +K +++G Y+ R DL+Y ++ +++ +
Sbjct: 1081 SAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILF 1140
Query: 1141 PTMSHWLAAKRILRYLKGTTDLGIFYKKG---GSNMKLMAFPDSDYAGDLDDRRSTSRFV 1197
P+ +++++ T D + + K KL+ D+ Y G+ +S +
Sbjct: 1141 PSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNI 1199
Query: 1198 FMLGSGVVSWSSKKQYVVALSTTEAEYIA---AALCACQCVWLIRVLEKIGVEEKTSTEI 1254
++L V+ S K + STTEAE A + +LI+ L+K + + +
Sbjct: 1200 YLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELDK----KPITKGL 1255
Query: 1255 MCDNSFTIQ-LSKNPVFHGKSKHIDVRFHFLRDLVNDGVIKLSYCNSQDQIADIMTKPIK 1313
+ D+ TI + N +++ + LRD V+ + + Y ++ IAD+MTKP+
Sbjct: 1256 LTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLP 1315
Query: 1314 LEQFEKL 1320
++ F+ L
Sbjct: 1316 IKTFKLL 1322
Score = 88.6 bits (218), Expect = 1e-16
Identities = 85/333 (25%), Positives = 141/333 (41%), Gaps = 23/333 (6%)
Query: 468 CTTCLTGK--QHREPVPKRSLWRASKQ-LQLVHSDICGPIKPSWNSDKRYILSFIDDHTR 524
C CL GK +HR R ++ S + Q +H+DI GP+ S Y +SF D+ T+
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 525 KTWVYFLHEKSEAFVK--FKEYKAGVEKEIGAHITCLRTDRVCEFTSNEFDEFCRSQGIN 582
WVY LH++ E + F A ++ + A + ++ DR E+T+ +F GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 583 RQLTTTYTP*QNGVAERKNRTIMNVVRSMLNEKQVPKVFWSEAVRWCVHIQNRCPIVAVE 642
TTT +GVAER NRT+++ R+ L +P W A+ + ++N +
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 643 NKTPEEAWSGEKPVVHYFRIFE-CVAHVHVPDQRRSKLDDKSKKCVFLGVSDESKAWRLY 701
+ A + + + + H P+ SK+ + L S S + +Y
Sbjct: 390 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIY 446
Query: 702 VPVSKKII-VSKDVVFEEEES------WDWGRIEEEIKLDILECGEEDQNEEENGRTDLN 754
+P KK + + V+ + +ES +D +E++ + E DLN
Sbjct: 447 LPSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYHSFIASNEIQQSNDLN 506
Query: 755 NLSSNSSSSSNSL-PESLPN------EPISNTP 780
S + S L PE L N P +TP
Sbjct: 507 IESDHDFQSDIELHPEQLRNVLSKAVSPTDSTP 539
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 118 bits (295), Expect = 1e-25
Identities = 132/549 (24%), Positives = 253/549 (46%), Gaps = 82/549 (14%)
Query: 820 NDPVSFGEAVKNK-KWRDAMSAEIESIERNQSWELT-------VLPKGVKPIGVKWVFKT 871
++ +++ + +K K K+ +A E+ + + ++W+ + PK V I ++F
Sbjct: 1235 DEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRV--INSMFIFNK 1292
Query: 872 KLNEDGDVEKFKARLVAKGYAQRHEVDYTEVFAPVARLDTIRVILEVAAQFSWEVFQLDV 931
K DG KAR VA+G Q + + + + + L +A ++ + QLD+
Sbjct: 1293 K--RDGT---HKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDI 1347
Query: 932 KSAFLHGELKEEVFVQQPKGFIRKGEEDKVYRLKKALYGLKQALRAWYSRIEAYFVRE-D 990
SA+L+ ++KEE++++ P G DK+ RLKK+LYGLKQ+ WY I++Y +++
Sbjct: 1348 SSAYLYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIQQCG 1404
Query: 991 FERCPSEHILFTKSKGGRILIVSLYVDDLI-----FTGNDRVMCDEFKSSMMLEFDMSDL 1045
E +F S+ + + L+VDD++ N R++ K M + + +L
Sbjct: 1405 MEEVRGWSCVFKNSQ----VTICLFVDDMVLFSKNLNSNKRII---EKLKMQYDTKIINL 1457
Query: 1046 G----KMKY-FLGVEVKQC*DGIFIC*RRYARDVLARFDMRDSNAVKNP--TVP----GT 1094
G +++Y LG+E+K Y R + M +S K P VP G
Sbjct: 1458 GESDEEIQYDILGLEIK------------YQRGKYMKLGMENSLTEKIPKLNVPLNPKGR 1505
Query: 1095 KLSK--------DEGGVRVDETLFK-------QVVGSLMYLTVT-RPDLMYGVSLISRFM 1138
KLS D+ + ++E +K +++G Y+ R DL+Y ++ +++ +
Sbjct: 1506 KLSAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHI 1565
Query: 1139 SSPTMSHWLAAKRILRYLKGTTDLGIFYKKG---GSNMKLMAFPDSDYAGDLDDRRSTSR 1195
P+ +++++ T D + + K KL+ D+ Y G+ +S
Sbjct: 1566 LFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIG 1624
Query: 1196 FVFMLGSGVVSWSSKKQYVVALSTTEAEYIA---AALCACQCVWLIRVLEKIGVEEKTST 1252
+++L V+ S K + STTEAE A + +LI+ L+K + +
Sbjct: 1625 NIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELDK----KPITK 1680
Query: 1253 EIMCDNSFTIQ-LSKNPVFHGKSKHIDVRFHFLRDLVNDGVIKLSYCNSQDQIADIMTKP 1311
++ D+ TI + N +++ + LRD V+ + + Y ++ IAD+MTKP
Sbjct: 1681 GLLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKP 1740
Query: 1312 IKLEQFEKL 1320
+ ++ F+ L
Sbjct: 1741 LPIKTFKLL 1749
Score = 87.8 bits (216), Expect = 2e-16
Identities = 81/312 (25%), Positives = 139/312 (43%), Gaps = 28/312 (8%)
Query: 468 CTTCLTGK--QHREPVPKRSLWRASKQ-LQLVHSDICGPIKPSWNSDKRYILSFIDDHTR 524
C CL GK +HR R ++ S + Q +H+DI GP+ S Y +SF D+ T+
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 696
Query: 525 KTWVYFLHEKSEAFVK--FKEYKAGVEKEIGAHITCLRTDRVCEFTSNEFDEFCRSQGIN 582
WVY LH++ E + F A ++ + A + ++ DR E+T+ +F GI
Sbjct: 697 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 756
Query: 583 RQLTTTYTP*QNGVAERKNRTIMNVVRSMLNEKQVPKVFWSEAVRWCVHIQNRCPIVAVE 642
TTT +GVAER NRT+++ R+ L +P W A+ + ++N +
Sbjct: 757 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 816
Query: 643 NKTPEEAWSGEKPVVHYFRIFE-CVAHVHVPDQRRSKLDDKSKKCVFLGVSDESKAWRLY 701
+ A + + + + H P+ SK+ + L S S + +Y
Sbjct: 817 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIY 873
Query: 702 VPVSKKII-VSKDVVFEEEESWDWGRIEEEIKLDILECGEEDQNEEENGRTDLNNLSSNS 760
+P KK + + V+ + +ES R+ ++ D L E DLN L+++
Sbjct: 874 LPSLKKTVDTTNYVILQGKES----RL-DQFNYDALTFDE-----------DLNRLTASY 917
Query: 761 SS--SSNSLPES 770
S +SN + +S
Sbjct: 918 QSFIASNEIQQS 929
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 105 bits (261), Expect = 1e-21
Identities = 104/468 (22%), Positives = 205/468 (43%), Gaps = 51/468 (10%)
Query: 882 FKARLVAKGYAQRHEVDYTEVFAPVARLDTIRVILEVAAQFSWEVFQLDVKSAFLHGELK 941
+KAR+V +G Q + Y+ + + I++ L +A + + LD+ AFL+ +L+
Sbjct: 1337 YKARIVCRGDTQSPDT-YSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLE 1395
Query: 942 EEVFVQQPKGFIRKGEEDKVYRLKKALYGLKQALRAWYSRIEAY---FVREDFERCPSEH 998
EE+++ P + V +L KALYGLKQ+ + W + Y +D P
Sbjct: 1396 EEIYIPHPH------DRRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPG-- 1447
Query: 999 ILFTKSKGGRILIVSLYVDDLIFTGNDRVMCDEFKSSMMLEFDMSDLGKM------KYFL 1052
+ T+ K L++++YVDD + ++ DEF + + F++ G + L
Sbjct: 1448 LYQTEDKN---LMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDIL 1504
Query: 1053 GVEVKQC*DGIFIC*RRYA------RDVLARFDMRDSNAVKN------PTVPGTKLSKDE 1100
G+++ + +R + + R D + + +K P + K+ +
Sbjct: 1505 GMDL--------VYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKK 1556
Query: 1101 GGVRVDETLFK-------QVVGSLMYLT-VTRPDLMYGVSLISRFMSSPTMSHWLAAKRI 1152
+++ E F+ Q++G L Y+ R D+ + V ++R ++ P + +I
Sbjct: 1557 DVLQMSEEEFRQGVLKLQQLLGELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKI 1616
Query: 1153 LRYLKGTTDLGIFYKKG-GSNMKLMAFPDSDYAGDLDDRRSTSRFVFMLGSGVVSWSSKK 1211
++YL D+GI Y + + K++A D+ G D +S + G + + S K
Sbjct: 1617 IQYLVRYKDIGIHYDRDCNKDKKVIAITDAS-VGSEYDAQSRIGVILWYGMNIFNVYSNK 1675
Query: 1212 QYVVALSTTEAEYIAAALCACQCVWLIRVLEKIGVEEKTSTEIMCDNSFTIQLSKNPVFH 1271
+S+TEAE A L L+++G + ++ D+ IQ
Sbjct: 1676 STNRCVSSTEAELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQ 1735
Query: 1272 GKSKHIDVRFHFLRDLVNDGVIKLSYCNSQDQIADIMTKPIKLEQFEK 1319
K K ++ +++ + + IKL + IAD++TKP+ F++
Sbjct: 1736 PKEKFTWIKTEIIKEKIKEKSIKLLKITGKGNIADLLTKPVSASDFKR 1783
Score = 87.4 bits (215), Expect = 2e-16
Identities = 121/554 (21%), Positives = 223/554 (39%), Gaps = 58/554 (10%)
Query: 234 RGRGRGRQSLNKEVIECYKCHR----LGHFQYECPDWEKKVNYAELEEEEELLLMAYVEP 289
R G R K +I YK HR L Q E W K + +
Sbjct: 361 RNLGLTRPISQKPII--YKVHRDNNHLSPVQNEQKSWNKTQKRSN-------------KV 405
Query: 290 HQTKKQEVWYLDSGCSNHMKGNKEWFLDLEEDFSRTVK---LGNDTRMAVVAKGSIRMQL 346
+ +KK + +D+G ++ +K L ED +R+ + +G ++ ++V G I+++
Sbjct: 406 YNSKKLVI--IDTGSGVNITNDKT-LLHNYEDSNRSTRFFGIGKNSSVSVKGYGYIKIK- 461
Query: 347 NGITQVISD---VYYIPELKNNLLSIGQLQEKGLAILIQDGTCK--------------VF 389
NG + YY+PE ++ ++S L +K +L + T V
Sbjct: 462 NGHNNTDNKCLLTYYVPEEESTIISCYDLAKKTKMVLSRKYTRLGNKIIKIKTKIVNGVI 521
Query: 390 HPMRGVIMQTNMSGNIMFFLLASMAPKRSVCLQAEAVSQKEAHM*HCRFGHLNHKGLR-T 448
H +++ + + + + +P L +++ ++AH R GH + + +
Sbjct: 522 HVKMNELIERPSDDSKINAIKPTSSP--GFKLNKRSITLEDAHK---RMGHTGIQQIENS 576
Query: 449 LSHKKMVVGLPSLESPEKI-CTTCLTGKQHREPVPKRSLWRASKQLQLVHS---DICGPI 504
+ H L ++ P + C TC K + S+ S + S DI GP+
Sbjct: 577 IKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTDHEPGSSWCMDIFGPV 636
Query: 505 KPSWNSDKRYILSFIDDHTR--KTWVYFLHEKSEAFVKFKEYKAGVEKEIGAHITCLRTD 562
S KRY+L +D++TR T +F + ++ VE + + + +D
Sbjct: 637 SSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQYVETQFDRKVREINSD 696
Query: 563 RVCEFTSNEFDEFCRSQGINRQLTTTYTP*QNGVAERKNRTIMNVVRSMLNEKQVPKVFW 622
R EFT+++ +E+ S+GI+ LT+T NG AER RTI+ ++L + + FW
Sbjct: 697 RGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITDATTLLRQSNLRVKFW 756
Query: 623 SEAVRWCVHIQNRCPIVAVENKTPEEAWSGEKPVVHYFRIFECVAHVHVPDQRRSKLDDK 682
AV +I+N + K P +A S + V + + KL
Sbjct: 757 EYAVTSATNIRNYLEHKST-GKLPLKAISRQPVTVRLMSFLPFGEKGIIWNHNHKKLKPS 815
Query: 683 SKKCVFLGVSDESKAWRLYVPVSKKIIVSKDVVFEEEESWDWGRIEEEIKLDILECGEED 742
+ L S ++ ++P KI+ S + + D GR+ ++ D
Sbjct: 816 GLPSIILCKDPNSYGYKFFIPSKNKIVTSDNYTI-PNYTMD-GRVRNTQNINKSHQFSSD 873
Query: 743 QNEEENGRTDLNNL 756
++EE+ + NL
Sbjct: 874 NDDEEDQIETVTNL 887
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 92.8 bits (229), Expect = 6e-18
Identities = 45/103 (43%), Positives = 65/103 (62%)
Query: 819 ENDPVSFGEAVKNKKWRDAMSAEIESIERNQSWELTVLPKGVKPIGVKWVFKTKLNEDGD 878
+ +P S A+K+ W AM E++++ RN++W L P +G KWVFKTKL+ DG
Sbjct: 25 KKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGT 84
Query: 879 VEKFKARLVAKGYAQRHEVDYTEVFAPVARLDTIRVILEVAAQ 921
+++ KARLVAKG+ Q + + E ++PV R TIR IL VA Q
Sbjct: 85 LDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQ 127
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 68.9 bits (167), Expect = 9e-11
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 1118 MYLTVTRPDLMYGVSLISRFMSSPTMSHWLAAKRILRYLKGTTDLGIFYKKGGSNMKLMA 1177
MYLT+TRPDL + V+ +S+F S+ + A ++L Y+KGT G+FY S+++L A
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFY-SATSDLQLKA 59
Query: 1178 FPDSDYAGDLDDRRSTSRF 1196
F DSD+A D RRS + F
Sbjct: 60 FADSDWASCPDTRRSVTGF 78
>M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710
(ORF120)
Length = 120
Score = 65.9 bits (159), Expect = 7e-10
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 601 NRTIMNVVRSMLNEKQVPKVFWSEAVRWCVHIQNRCPIVAVENKTPEEAWSGEKPVVHYF 660
NRTI+ VRSML E +PK F ++A VHI N+ P A+ P+E W P Y
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 661 RIFECVAHVHVPDQRRSKLDDKSKK 685
R F CVA++H + KL ++KK
Sbjct: 62 RRFGCVAYIHCDE---GKLKPRAKK 83
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 53.5 bits (127), Expect = 4e-06
Identities = 57/205 (27%), Positives = 89/205 (42%), Gaps = 19/205 (9%)
Query: 439 GHLNHKGLRTLSHKKMVVGLPSL----ESPEKICTTCLTGKQHREPVPKRSLWRASKQLQ 494
GH K + + H+K P + E+ + C CL H + + +R + L+
Sbjct: 1479 GHFGIKKMWRMVHRKFY--WPQMRVCVENCVRTCAKCLCANDHSKLTSSLTPYRMTFPLE 1536
Query: 495 LVHSDICGP-IKPSWNSDKRYILSFIDDHTRK-TWVYFLHEKSEAFVK-FKEYKAGVEKE 551
+V D+ + N RYIL+ ID T+ T V +K+E +K F E A E
Sbjct: 1537 IVACDLMDVGLSVQGN---RYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGR 1593
Query: 552 IGAHITCLRTDRVCEFTSNEFDEFCRSQGINRQLTTTYTP*QNGVAERKNRTIMNVVRSM 611
I L TD+ EF + F +F I T Y NG ER N+TIM++++
Sbjct: 1594 IPLK---LLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMK-- 1648
Query: 612 LNEKQVPKVFWSEAVRWCVHIQNRC 636
+K + W + V + V+ N C
Sbjct: 1649 --KKTAVPMEWDDQVVYAVYAYNNC 1671
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 48.5 bits (114), Expect = 1e-04
Identities = 41/147 (27%), Positives = 61/147 (40%), Gaps = 9/147 (6%)
Query: 468 CTTCL-TGKQHREPVPKRSLWRASKQLQLVHSDICGPIKPSWNSDKRYILSFIDDHTRKT 526
C CL T ++ P R K D GP+ PS Y+L +D T T
Sbjct: 650 CQQCLITNASNKASGPILRPDRPQKPFDKFFIDYIGPLPPS--QGYLYVLVVVDGMTGFT 707
Query: 527 WVYFLHEKS-EAFVKFKEYKAGVEKEIGAHITCLRTDRVCEFTSNEFDEFCRSQGINRQL 585
W+Y S A VK + A + +D+ FTS+ F E+ + +GI+ +
Sbjct: 708 WLYPTKAPSTSATVKSLNVLTSI-----AIPKVIHSDQGAAFTSSTFAEWAKERGIHLEF 762
Query: 586 TTTYTP*QNGVAERKNRTIMNVVRSML 612
+T Y P ERKN I ++ +L
Sbjct: 763 STPYHPQSGSKVERKNSDIKRLLTKLL 789
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 45.4 bits (106), Expect = 0.001
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
Query: 491 KQLQLVHSDICGPIKPSWNSDKRYILSFIDDHTRKTWVYFLHEKS-EAFVKFKEYKAGVE 549
K + D GP+ PS + ++L +D T W+Y S A VK +
Sbjct: 882 KPFDKFYIDYIGPLPPS--NGYLHVLVVVDSMTGFVWLYPTKAPSTSATVKALNMLTSI- 938
Query: 550 KEIGAHITCLRTDRVCEFTSNEFDEFCRSQGINRQLTTTYTP*QNGVAERKNRTIMNVVR 609
A L +D+ FTS+ F ++ + +GI + +T Y P +G ERKN I ++
Sbjct: 939 ----AIPKVLHSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNSDIKRLLT 994
Query: 610 SML 612
+L
Sbjct: 995 KLL 997
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 43.5 bits (101), Expect = 0.004
Identities = 32/115 (27%), Positives = 53/115 (45%), Gaps = 8/115 (6%)
Query: 499 DICGPIKPSWNSDKRYILSFIDDHTRKTWVYFLHEKS-EAFVKFKEYKAGVEKEIGAHIT 557
D GP+ PS + ++L +D T W+Y S A VK + A
Sbjct: 892 DYIGPLPPS--NGYLHVLVVVDSMTGFVWLYPTKAPSTSATVKALNMLTSI-----AVPK 944
Query: 558 CLRTDRVCEFTSNEFDEFCRSQGINRQLTTTYTP*QNGVAERKNRTIMNVVRSML 612
+ +D+ FTS F ++ +++GI + +T Y P +G ERKN I ++ +L
Sbjct: 945 VIHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLL 999
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 42.4 bits (98), Expect = 0.009
Identities = 51/220 (23%), Positives = 85/220 (38%), Gaps = 18/220 (8%)
Query: 440 HLNHKGLRTLSHKKMVV----GLPS-LESPEKICTTCLTGKQHREPVPKRSLWRASKQLQ 494
H H G+ + K GL S +E+ + C C + VP +
Sbjct: 791 HEGHPGIVQMKQKARSFVFWRGLDSDIENMVRHCNNCQENSKMPRVVPLNPWPVPEAPWK 850
Query: 495 LVHSDICGPIKPSWNSDKRYILSFIDDHTRKTWVYFLHEKSEAFVKFKEYKAGVEKEIGA 554
+H D GP+ Y+L +D T+ V +S + V + + G
Sbjct: 851 RIHIDFAGPLNGC------YLLVVVDAKTKYAEVKLT--RSISAVTTIDLLEEIFSIHGY 902
Query: 555 HITCLRTDRVCEFTSNEFDEFCRSQGINRQLTTTYTP*QNGVAERKNRTIMNVVRSMLNE 614
T + +D + TS+ F + C+S GI + + Y P NG AER T+ + + E
Sbjct: 903 PETII-SDNGTQLTSHLFAQMCQSHGIEHKTSAVYYPRSNGAAERFVDTLKRGIAKIKGE 961
Query: 615 KQVPKVFWSEAVRWCVHIQNRCPIVAVENKTPEEAWSGEK 654
V + + ++ + +N P A+ TP E G K
Sbjct: 962 GSVNQQILN---KFLISYRN-TPHSALNGSTPAECHFGRK 997
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,604,263
Number of Sequences: 164201
Number of extensions: 6823778
Number of successful extensions: 20781
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 20507
Number of HSP's gapped (non-prelim): 255
length of query: 1332
length of database: 59,974,054
effective HSP length: 122
effective length of query: 1210
effective length of database: 39,941,532
effective search space: 48329253720
effective search space used: 48329253720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 72 (32.3 bits)
Lotus: description of TM0346.12