BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0311.7
(381 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
HD_HUMAN (P42858) Huntingtin (Huntington's disease protein) (HD ... 55 3e-07
GLT_DROME (P33438) Glutactin precursor 54 9e-07
CDX2_HUMAN (Q99626) Homeobox protein CDX-2 (Caudal-type homeobox... 50 1e-05
PCLO_MOUSE (Q9QYX7) Piccolo protein (Presynaptic cytomatrix prot... 50 1e-05
EBN2_EBV (P12978) EBNA-2 nuclear protein 50 1e-05
VNUA_PRVKA (P33485) Probable nuclear antigen 49 2e-05
SNF5_YEAST (P18480) Transcription regulatory protein SNF5 (SWI/S... 49 2e-05
PO62_HUMAN (P78424) POU domain, class 6, transcription factor 2 ... 48 5e-05
PCLO_HUMAN (Q9Y6V0) Piccolo protein (Aczonin) 48 5e-05
ACRO_HUMAN (P10323) Acrosin precursor (EC 3.4.21.10) 47 8e-05
SEB_HUMAN (Q9Y6X0) SET-binding protein (SEB) 47 1e-04
HD_MOUSE (P42859) Huntingtin (Huntington's disease protein homol... 47 1e-04
EP40_MOUSE (Q8CHI8) E1A binding protein p400 (EC 3.6.1.-) (p400 ... 47 1e-04
PO62_MOUSE (Q8BJI4) POU domain, class 6, transcription factor 2 46 1e-04
R3HD_HUMAN (Q15032) R3H domain protein 1 46 2e-04
HXAA_MOUSE (P31310) Homeobox protein Hox-A10 (Hox-1.8) 46 2e-04
ACRO_RABIT (P48038) Acrosin precursor (EC 3.4.21.10) 46 2e-04
ZIC5_HUMAN (Q96T25) Zinc finger protein ZIC 5 (Zinc finger prote... 45 2e-04
SSGP_VOLCA (P21997) Sulfated surface glycoprotein 185 precursor ... 45 2e-04
HD_RAT (P51111) Huntingtin (Huntington's disease protein homolog... 45 2e-04
>HD_HUMAN (P42858) Huntingtin (Huntington's disease protein) (HD
protein)
Length = 3144
Score = 55.1 bits (131), Expect = 3e-07
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 189 VFEIYQAISDVLQRKNSQRFITTTTPQQQQQQQPLVTLVTSTPPPQHPQPL-QAQPL--- 244
+ + ++++ Q++ Q+ QQQQQQQ PPPQ PQP QAQPL
Sbjct: 7 LMKAFESLKSFQQQQQQQQQQQQQQQQQQQQQQQPPPPPPPPPPPQLPQPPPQAQPLLPQ 66
Query: 245 ---PPPPPPPPQPPATSITP 261
PPPPPPPP PA + P
Sbjct: 67 PQPPPPPPPPPPGPAVAEEP 86
>GLT_DROME (P33438) Glutactin precursor
Length = 1026
Score = 53.5 bits (127), Expect = 9e-07
Identities = 50/217 (23%), Positives = 91/217 (41%), Gaps = 19/217 (8%)
Query: 143 DNLLRDYKKVRDYESKSESKDHNYNFPSYWTLNKQQRKDHNLPSNMVFEIYQAISDVLQR 202
D + +++R + + + +++ +QQ + P + Y+ S LQ
Sbjct: 815 DREQQQQEQLRREQQEQQEREYQLQLEREQQEREQQERGQQEPGPEEYPSYEEYSRALQE 874
Query: 203 KNSQRFITTTTPQQQQQQQPLVTLVTSTPPPQHPQPLQAQPLPPPPPPPPQPPATSITPA 262
KN++R Q++++QQ L + QHP+ Q LP P P A +
Sbjct: 875 KNAERDRIYAEEQERERQQQETLLQEN---QQHPE----QSLPEEQPTHPNYEAYDGDRS 927
Query: 263 GSEYNHGDQCVKEKTESSGSEQSDQEENNGSESSKRR---------KVRNIGS--SIMRS 311
+E +Q +++ E EQ D+++ E S KV + S + + +
Sbjct: 928 YAEEQEREQQRRDQVEQEREEQPDEDQGEEYERSPDEEEAAEQDVLKVEDFPSYEAYLEA 987
Query: 312 ASVLARALRSCEEKKEKRHREMMELEQRRIQMEENRN 348
A+ L E+ +E+R+R E E+ RIQ E RN
Sbjct: 988 ATKLREEQEEQEKLEEERYRAQQE-EEDRIQAERERN 1023
Score = 34.7 bits (78), Expect = 0.41
Identities = 52/280 (18%), Positives = 99/280 (34%), Gaps = 44/280 (15%)
Query: 82 PPPPTTTTTPHDPSTTPRPSPAACSAASSSRTSGEL-RWKWVENYCWSHGCLRSQNQCND 140
PP TTTTT +TT RP A +R S + W + R Q +
Sbjct: 600 PPITTTTTTTTTTTTTSRPYAYNPYANWQNRPSQQHPNWHPADPEYVRAQEARQQEFIRE 659
Query: 141 KW----DNLLRDYKKVRDYESKSESKDHNYNFPSYWTLNKQQRK-----------DHNLP 185
+ + LRD ++ E + + + +QQR+ + +
Sbjct: 660 REQRRREQQLRDQQRYPQQEPREQQDERIRQQREQEERLRQQREQEERLRQQRELEERIR 719
Query: 186 SNMVFEIYQAISDVLQRKNSQRFITTTTPQQQQQQQPLVTLVTSTPPPQHPQPLQAQPLP 245
E Y+ + +R+ +R ++++QQQP P +P+P+ P
Sbjct: 720 QQQEREQYER--EQQEREQREREELERQQREREQQQP------EQQPEYNPEPVNPWGYP 771
Query: 246 PPPPPPPQPPATSITPAGSEYNHGDQCVKEKTESSGSEQSDQEENNGSESSKRRKVRNIG 305
P P P P S +G + + E+ + +E+ + + R
Sbjct: 772 VQEPQPDDNPEDGRLPYPSYEQYGPEGNENLPETDANRNFSEEDREQQQQEQLR------ 825
Query: 306 SSIMRSASVLARALRSCEEKKEKRHREMMELEQRRIQMEE 345
R +E++E+ ++ +E EQ+ + +E
Sbjct: 826 --------------REQQEQQEREYQLQLEREQQEREQQE 851
>CDX2_HUMAN (Q99626) Homeobox protein CDX-2 (Caudal-type homeobox
protein 2) (CDX-3)
Length = 313
Score = 50.1 bits (118), Expect = 1e-05
Identities = 46/184 (25%), Positives = 72/184 (39%), Gaps = 33/184 (17%)
Query: 91 PHDPSTTPR-------------PSPAACSAASSSRTSGELR--WKWVENYCWSHGCLRSQ 135
PH P+ P P PAA +AA G+ R +W+ + +
Sbjct: 123 PHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQVK 182
Query: 136 NQCNDKWDNLLRDYKKVRDYESKSESKDHNYNFPSYWTLNKQQRKDHNLPSNMVFEIYQA 195
+ DK+ + D++++ + +++ Y T+ R+ L + + Q
Sbjct: 183 TRTKDKYRVVYTDHQRLE--------LEKEFHYSRYITI----RRKAELAATLGLSERQV 230
Query: 196 ISDVLQRKNSQRFITTTTPQQQQQQQPLVTLVTSTPPPQHPQPLQAQPLPPPPPPPPQPP 255
R+ +R I QQQQQQQP PPP PQP Q QP P P P P
Sbjct: 231 KIWFQNRRAKERKINKKKLQQQQQQQP------PQPPPPPPQPPQPQPGPLRSVPEPLSP 284
Query: 256 ATSI 259
+S+
Sbjct: 285 VSSL 288
>PCLO_MOUSE (Q9QYX7) Piccolo protein (Presynaptic cytomatrix protein)
(Aczonin) (Brain-derived HLMN protein)
Length = 5038
Score = 49.7 bits (117), Expect = 1e-05
Identities = 20/35 (57%), Positives = 23/35 (65%)
Query: 227 VTSTPPPQHPQPLQAQPLPPPPPPPPQPPATSITP 261
+++ PPP P P P PPPPPPPP PPATS P
Sbjct: 2301 ISAQPPPPPPPPPPPPPPPPPPPPPPLPPATSPKP 2335
Score = 38.9 bits (89), Expect = 0.022
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 214 PQQQQQQQPLVTL------VTSTPPPQHPQPLQAQP-LPPPPPPPPQPPATSITPAGSEY 266
P + Q QQP+ T + P PQHP P + QP P P P PQ P TPA +
Sbjct: 401 PAKPQPQQPVATKPQPQQPAPAKPQPQHPTPAKPQPQQPTPAKPQPQQP----TPAKPQP 456
Query: 267 NH 268
H
Sbjct: 457 QH 458
Score = 34.3 bits (77), Expect = 0.54
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 227 VTSTPPPQHP----QPLQAQPLPPPPPPPPQPP 255
V++ P HP L PPPPPPPP PP
Sbjct: 2283 VSTHPSKSHPFFRSSSLDISAQPPPPPPPPPPP 2315
Score = 33.9 bits (76), Expect = 0.71
Identities = 15/28 (53%), Positives = 16/28 (56%), Gaps = 3/28 (10%)
Query: 231 PPPQHPQPLQAQPLPPPPPPP---PQPP 255
PPP P P P PPPP PP P+PP
Sbjct: 2309 PPPPPPPPPPPPPPPPPPLPPATSPKPP 2336
>EBN2_EBV (P12978) EBNA-2 nuclear protein
Length = 487
Score = 49.7 bits (117), Expect = 1e-05
Identities = 27/72 (37%), Positives = 32/72 (43%), Gaps = 7/72 (9%)
Query: 191 EIYQAISDVLQRKNSQRFITTTTPQQQQ-QQQPLVTLV------TSTPPPQHPQPLQAQP 243
+ Y I D N + + P Q+Q PL+ L T PPP P P P
Sbjct: 12 QTYHLIVDTDSLGNPSLSVIPSNPYQEQLSDTPLIPLTIFVGENTGVPPPLPPPPPPPPP 71
Query: 244 LPPPPPPPPQPP 255
PPPPPPPP PP
Sbjct: 72 PPPPPPPPPPPP 83
Score = 42.7 bits (99), Expect = 0.002
Identities = 16/25 (64%), Positives = 16/25 (64%)
Query: 231 PPPQHPQPLQAQPLPPPPPPPPQPP 255
PPP P P P PPPPPPPP PP
Sbjct: 76 PPPPPPPPPPPPPSPPPPPPPPPPP 100
Score = 42.4 bits (98), Expect = 0.002
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 231 PPPQHPQPLQAQPLPPPPPPPPQ--------PPATSITPAGSEYNHG 269
PPP P P + P PPPPPPPPQ P P G + HG
Sbjct: 79 PPPPPPPPPPSPPPPPPPPPPPQRRDAWTQEPSPLDRDPLGYDVGHG 125
Score = 39.3 bits (90), Expect = 0.017
Identities = 15/25 (60%), Positives = 15/25 (60%)
Query: 231 PPPQHPQPLQAQPLPPPPPPPPQPP 255
PPP P P P PPPPPPP PP
Sbjct: 75 PPPPPPPPPPPPPPSPPPPPPPPPP 99
Score = 31.2 bits (69), Expect = 4.6
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 212 TTPQQQQQQQPLVTLVTSTP----PPQHPQPLQAQPLPPPP---PPPPQPPATSITP 261
T PQ + Q + L + P P P+ QPL PP PP P PPAT P
Sbjct: 158 TAPQARLVQPHVPPLRPTAPTILSPLSQPRLTPPQPLMMPPRPTPPTPLPPATLTVP 214
>VNUA_PRVKA (P33485) Probable nuclear antigen
Length = 1733
Score = 48.9 bits (115), Expect = 2e-05
Identities = 27/88 (30%), Positives = 38/88 (42%), Gaps = 13/88 (14%)
Query: 231 PPPQHPQPLQAQPLPPP--PPPPPQPPATSITP-----------AGSEYNHGDQCVKEKT 277
PPP P P PLPPP PPPPPQPP + G G + E T
Sbjct: 271 PPPPSPPPRPPPPLPPPPPPPPPPQPPPAGGSARRRRRGGGPPGRGGRRRGGKRRRAEGT 330
Query: 278 ESSGSEQSDQEENNGSESSKRRKVRNIG 305
E++ ++ ++E+ +G E + G
Sbjct: 331 EAAAADAEEEEDGDGDEDEDEDRAEGEG 358
Score = 38.5 bits (88), Expect = 0.029
Identities = 69/310 (22%), Positives = 95/310 (30%), Gaps = 95/310 (30%)
Query: 20 HHHHHHNHHLPLLHGTTTAPPLPSSSSAPRDYRKGNWTIQETLILITAKKLDDERRLKAS 79
HHH H+HH PP PS + G W ++ +L T L S
Sbjct: 22 HHHQQHHHH---------PPPPPSRTHFTTITTSGRWLQRQFPVLTTTVFFS----LFLS 68
Query: 80 SPPPPPTTTTTPHDPSTTPRPSPAACSAASSSRTSGELRWKWVENYCWSHGCLRSQNQCN 139
PP P P P RP+PA
Sbjct: 69 FPPHP------PRPPQDHHRPTPA------------------------------------ 86
Query: 140 DKWDNLLRDYKKVRDYESKSES-KDHNYNFPSYWTLNKQQRKDHN-----LPSNMVFE-- 191
RD++ RD+ + + +DH + P T + H LP+ + E
Sbjct: 87 -------RDHRDPRDHLPPTRTRRDHQHRPPPTTTTTTIKDPQHPQDPLLLPTKTLQEED 139
Query: 192 --IYQAISDVLQRKNSQRFI-----TTTTPQQQQQQQPLVTLVTSTPP-------PQHPQ 237
+ + D K +T Q P S PP H
Sbjct: 140 PHLLRPTRDPPSAKTHHHQDPPGGGPPSTSSHHHHQDPPGGGPPSPPPRPSTSSSSSHQG 199
Query: 238 PLQAQPLPP--PPP--PPPQPPATSITPAGSE------YNHGDQCVKEKTESSGSEQSDQ 287
P +P PP PPP PPP P S T AGSE ++H + + G E D+
Sbjct: 200 PPSTRPPPPQRPPPRWPPPSPQKISETRAGSENTAQTLFSHSENKLFSHPMGEGGE-GDR 258
Query: 288 EENNGSESSK 297
G E +
Sbjct: 259 GTAGGGEGDR 268
Score = 34.3 bits (77), Expect = 0.54
Identities = 39/154 (25%), Positives = 48/154 (30%), Gaps = 51/154 (33%)
Query: 11 PPPINIPDPHHHHHHNHHLPLLHGTTTAPPLPSSSSA------------------PR--- 49
PP P HHHH P G + PP PS+SS+ PR
Sbjct: 160 PPGGGPPSTSSHHHHQD--PPGGGPPSPPPRPSTSSSSSHQGPPSTRPPPPQRPPPRWPP 217
Query: 50 -------DYRKGNWTIQETLILITAKKL---------------------DDERRLKASSP 81
+ R G+ +TL + KL D + S P
Sbjct: 218 PSPQKISETRAGSENTAQTLFSHSENKLFSHPMGEGGEGDRGTAGGGEGDRDDPPPPSPP 277
Query: 82 PPPPTTTTTPHDPSTTPRPSPAACSAASSSRTSG 115
P PP P P P+P PA SA R G
Sbjct: 278 PRPPPPLPPPPPPPPPPQPPPAGGSARRRRRGGG 311
>SNF5_YEAST (P18480) Transcription regulatory protein SNF5 (SWI/SNF
complex component SNF5) (Transcription factor TYE4)
Length = 905
Score = 48.9 bits (115), Expect = 2e-05
Identities = 43/202 (21%), Positives = 86/202 (42%), Gaps = 39/202 (19%)
Query: 191 EIYQAIS----DVLQRKNSQRFITTTTPQQQQQQQ---PLVTLVTSTPPPQHPQPL---Q 240
++YQ+++ ++Q+++ Q + QQQQQQQ P T + PPPQ QP+
Sbjct: 35 QLYQSLTPQQLQMIQQRHQQLLRSRLQQQQQQQQQTSPPPQTHQSPPPPPQQSQPIANQS 94
Query: 241 AQPLPPPPPPP----PQ-------------PPATSITPAGSEY------------NHGDQ 271
A PPPPP P PQ PP + P ++ + Q
Sbjct: 95 ATSTPPPPPAPHNLHPQIGQVPLAPAPINLPPQIAQLPLATQQQVLNKLRQQAIAKNNPQ 154
Query: 272 CVKEKTESSGSEQSDQEENNGSESSKRRKVRNIGSSIMRSASVLARALRSCEEKKEKRHR 331
V T + Q E+ G ++++ + + + + R +++++ RH
Sbjct: 155 VVNAITVAQQQVQRQIEQQKGQQTAQTQLEQQRQLLVQQQQQQQLRNQIQRQQQQQFRHH 214
Query: 332 EMMELEQRRIQMEENRNEVHRQ 353
++ +Q++ Q ++ +++ +Q
Sbjct: 215 VQIQQQQQKQQQQQQQHQQQQQ 236
Score = 30.4 bits (67), Expect = 7.8
Identities = 26/88 (29%), Positives = 37/88 (41%), Gaps = 4/88 (4%)
Query: 174 LNKQQRKDHNLPSNMVFEIYQAIS--DVLQRKNSQRFITTTTPQQQQQ-QQPLVTLVTST 230
+N Q + +++P N + I+ I + Q+ + TPQQ Q QQ L+ S
Sbjct: 1 MNNQPQGTNSVP-NSIGNIFSNIGTPSFNMAQIPQQLYQSLTPQQLQMIQQRHQQLLRSR 59
Query: 231 PPPQHPQPLQAQPLPPPPPPPPQPPATS 258
Q Q Q P P PP PP S
Sbjct: 60 LQQQQQQQQQTSPPPQTHQSPPPPPQQS 87
>PO62_HUMAN (P78424) POU domain, class 6, transcription factor 2
(Retina-derived POU-domain factor-1) (RPF-1)
Length = 684
Score = 47.8 bits (112), Expect = 5e-05
Identities = 32/95 (33%), Positives = 42/95 (43%), Gaps = 2/95 (2%)
Query: 215 QQQQQQQPLVTLVTSTPPPQHPQPLQAQPLPPPPPPPPQPPATSITPA-GSEYNHGDQCV 273
QQQQQQ P T P PQ P Q QPL P PP P PPA+ PA S+ Q
Sbjct: 184 QQQQQQPPPSTNQHPQPAPQAPSQSQQQPLQPTPPQQP-PPASQQPPAPTSQLQQAPQPQ 242
Query: 274 KEKTESSGSEQSDQEENNGSESSKRRKVRNIGSSI 308
+ + S Q+ S S ++ ++ G +
Sbjct: 243 QHQPHSHSHNQNQPSPTQQSSSPPQKPSQSPGHGL 277
>PCLO_HUMAN (Q9Y6V0) Piccolo protein (Aczonin)
Length = 5183
Score = 47.8 bits (112), Expect = 5e-05
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 227 VTSTPPPQHPQPLQAQPLPPPPPPPPQPPATSITP 261
+++ PPP P P P PPPPPPPP PP TS P
Sbjct: 2332 ISAQPPPPPPPPPPPPPPPPPPPPPPLPPPTSPKP 2366
Score = 38.9 bits (89), Expect = 0.022
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 231 PPPQHPQPLQAQPLPPPPPPPPQPPATSITP 261
PPP P P P PPPP PPP P +I P
Sbjct: 2340 PPPPPPPPPPPPPPPPPPLPPPTSPKPTILP 2370
Score = 32.7 bits (73), Expect = 1.6
Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 14/103 (13%)
Query: 4 PSTTPIPPPPINIPDPHHHHH---HNHHLPLLHGTTTAPPLPSSSSAPRDYRKGNWTIQE 60
P P PPPP +P P L + TTA PL + T E
Sbjct: 2346 PPPPPPPPPPPPLPPPTSPKPTILPKKKLTVASPVTTATPLFDAV-----------TTLE 2394
Query: 61 TLILITAKKLDDERRLKASSPPPPPTTTTTPHDPSTTPRPSPA 103
T ++ + L R + PP PP ++ P T RP P+
Sbjct: 2395 TTAVLRSNGLPVTRICTTAPPPVPPKPSSIPSGLVFTHRPEPS 2437
Score = 32.7 bits (73), Expect = 1.6
Identities = 26/97 (26%), Positives = 39/97 (39%), Gaps = 15/97 (15%)
Query: 8 PIPPPPINIPDPH-HHHHHNHHLPLLHGTTTAPPLPSSSSAPRDYRKG----NWTIQETL 62
P+PP P +IP H P + P LP+++ P D + T TL
Sbjct: 2416 PVPPKPSSIPSGLVFTHRPEPSKPPIAPKPVIPQLPTTTQKPTDIHPKPTGLSLTSSMTL 2475
Query: 63 ILITAKKLDDERRLKASSPPPPPTTTTTPHDPSTTPR 99
L+T+ A P PT+ +PH ++PR
Sbjct: 2476 NLVTS----------ADYKLPSPTSPLSPHSNKSSPR 2502
Score = 32.0 bits (71), Expect = 2.7
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 211 TTTPQQQQ--QQQPLVTLVTSTPPPQHPQPLQAQPLPPPPPPPPQPPATSITPAGSE 265
T TP Q + QQP T PPPQ P P + P P PP S P+ +
Sbjct: 437 TKTPAQTKPPSQQPGST----KPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQ 489
Score = 30.4 bits (67), Expect = 7.8
Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 27/95 (28%)
Query: 213 TPQQQQQQQPLVTLVTSTPPPQHPQPLQAQPLPPPPP------------------PPPQP 254
+P + QQP PP Q P ++QP P PP PP QP
Sbjct: 300 SPSKPPIQQP----TPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQP 355
Query: 255 PATSITPAGSEYNHGDQCVKEKTESSGSEQSDQEE 289
P T+ PA K + +GSE+ E+
Sbjct: 356 PGTTKPPA-----QPLGPAKPPAQQTGSEKPSSEQ 385
>ACRO_HUMAN (P10323) Acrosin precursor (EC 3.4.21.10)
Length = 421
Score = 47.0 bits (110), Expect = 8e-05
Identities = 27/63 (42%), Positives = 31/63 (48%), Gaps = 5/63 (7%)
Query: 231 PPPQHPQPLQAQPLPPP-PPPPPQPPATSITPAGSEYNHGDQ----CVKEKTESSGSEQS 285
P P P P A PLPPP PPPPP P +T+ P G + Q +K KT S G
Sbjct: 348 PSPPPPPPPPASPLPPPPPPPPPTPSSTTKLPQGLSFAKRLQQLIEVLKGKTYSDGKNHY 407
Query: 286 DQE 288
D E
Sbjct: 408 DME 410
Score = 43.5 bits (101), Expect = 9e-04
Identities = 19/32 (59%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 231 PPPQHPQPLQAQPLPPP-PPPPPQPPATSITP 261
P P P+P AQP PPP PPPPP PPA+ + P
Sbjct: 332 PRPLPPRPPAAQPPPPPSPPPPPPPPASPLPP 363
Score = 38.1 bits (87), Expect = 0.037
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 204 NSQRFITTTTPQQQQQQQPLVTLVTSTPPPQH--------PQPLQAQP---LPPPPPPPP 252
N+ R I + TP + P + S P H P+PL +P PPPPP PP
Sbjct: 292 NALRMIQSATPPPPTTRPPPIRPPFSHPISAHLPWYFQPPPRPLPPRPPAAQPPPPPSPP 351
Query: 253 QPPATSITP 261
PP +P
Sbjct: 352 PPPPPPASP 360
>SEB_HUMAN (Q9Y6X0) SET-binding protein (SEB)
Length = 1542
Score = 46.6 bits (109), Expect = 1e-04
Identities = 26/79 (32%), Positives = 37/79 (45%), Gaps = 7/79 (8%)
Query: 231 PPPQHPQPLQAQPLPPPPPPPPQPPATSITPAGSEYNHGDQCVKEKTESSGSEQSDQEEN 290
PPP P P PPPPPP P PP TP G + H Q + + S +Q +E
Sbjct: 1470 PPPPPPLP------PPPPPPLPPPPPLPKTPRGGKRKHKPQAPAQPPQQSPPQQPLPQEE 1523
Query: 291 NGSESSKRRKVRNIGSSIM 309
++ ++RK R S ++
Sbjct: 1524 E-VKAKRQRKSRGSESEVL 1541
>HD_MOUSE (P42859) Huntingtin (Huntington's disease protein homolog)
(HD protein)
Length = 3119
Score = 46.6 bits (109), Expect = 1e-04
Identities = 24/47 (51%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 215 QQQQQQQPLVTLVTSTPPPQHPQPLQAQPLPPPPPPPPQPPATSITP 261
QQQQQQQP PPP PQP Q P PPPPPP P + P
Sbjct: 18 QQQQQQQP-PPQAPPPPPPPPPQPPQPPPQGQPPPPPPPLPGPAEEP 63
Score = 32.3 bits (72), Expect = 2.1
Identities = 21/53 (39%), Positives = 23/53 (42%), Gaps = 7/53 (13%)
Query: 215 QQQQQQQPLVTLVTSTPPPQHPQPL-QAQPLPP------PPPPPPQPPATSIT 260
QQQQQ P PPPQ PQP Q QP PP P P P ++
Sbjct: 20 QQQQQPPPQAPPPPPPPPPQPPQPPPQGQPPPPPPPLPGPAEEPLHRPKKELS 72
>EP40_MOUSE (Q8CHI8) E1A binding protein p400 (EC 3.6.1.-) (p400 kDa
SWI2/SNF2-related protein) (Domino homolog) (mDomino)
Length = 3072
Score = 46.6 bits (109), Expect = 1e-04
Identities = 32/76 (42%), Positives = 38/76 (49%), Gaps = 20/76 (26%)
Query: 194 QAISDVLQRKNSQRFITTTTPQQQQQQQPLVTLVTSTPPPQHPQPLQAQPLPPPPPPPPQ 253
+A++D Q+K Q +T PQQQQQQQ Q Q Q Q PPPPP P
Sbjct: 2443 KALAD--QQKAQQPPVTQPPPQQQQQQQ------------QQQQQQQQQQQPPPPPQQPP 2488
Query: 254 PP------ATSITPAG 263
PP A+S TPAG
Sbjct: 2489 PPVPQPQAASSQTPAG 2504
Score = 35.8 bits (81), Expect = 0.19
Identities = 23/65 (35%), Positives = 28/65 (42%), Gaps = 3/65 (4%)
Query: 201 QRKNSQRFITTTTPQ-QQQQQQPLVTLVTSTPPPQHPQPLQAQP--LPPPPPPPPQPPAT 257
Q++ Q+ PQ Q Q Q P S P+H +Q Q LPP PPPP P
Sbjct: 2692 QQQQQQQTSQVQVPQLQSQAQSPAQIKAVSKLGPEHIIKMQKQKMQLPPQPPPPQAQPGP 2751
Query: 258 SITPA 262
PA
Sbjct: 2752 PQQPA 2756
>PO62_MOUSE (Q8BJI4) POU domain, class 6, transcription factor 2
Length = 691
Score = 46.2 bits (108), Expect = 1e-04
Identities = 38/110 (34%), Positives = 46/110 (41%), Gaps = 21/110 (19%)
Query: 200 LQRKNSQRFITTTTPQQQQQQQPLVTLVTSTPPP--QHPQPL-----QAQPLPPPPPPP- 251
LQ + Q+ QQQQQQQP PPP QHPQP Q+QP PP PPP
Sbjct: 177 LQLQQQQQQQQQQQQQQQQQQQP-------PPPPTSQHPQPASQAPPQSQPTPPHQPPPA 229
Query: 252 ----PQPPA--TSITPAGSEYNHGDQCVKEKTESSGSEQSDQEENNGSES 295
P PPA T H + + + S ++QS S S
Sbjct: 230 SQQLPAPPAQLEQATQPQQHQPHSHPQNQTQNQPSPTQQSSSPPQKPSPS 279
Score = 42.4 bits (98), Expect = 0.002
Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 215 QQQQQQQPLVTLVTSTPPP---QHPQPL-QAQPLPPPPPPPPQPPATSITPA-GSEYNHG 269
QQQQQQQ PPP QHPQP QA P P PP PPA+ PA ++
Sbjct: 191 QQQQQQQ-------QPPPPPTSQHPQPASQAPPQSQPTPPHQPPPASQQLPAPPAQLEQA 243
Query: 270 DQCVKEKTESSGSEQSDQEENNGSESS 296
Q + + S Q+ + + +SS
Sbjct: 244 TQPQQHQPHSHPQNQTQNQPSPTQQSS 270
Score = 35.0 bits (79), Expect = 0.32
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 214 PQQQQQQQPLVTLVTSTPPPQHPQPLQAQPLPPPPPPP 251
PQ Q Q QP T +S+PP Q P P LP P PP
Sbjct: 255 PQNQTQNQPSPTQQSSSPP-QKPSPSPGHSLPSPLTPP 291
Score = 33.9 bits (76), Expect = 0.71
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 16/103 (15%)
Query: 215 QQQQQQQPLVTLVTSTPPPQHPQPLQAQPLPPPPPPPPQPPATSITPAGSEYNHGDQCVK 274
QQQQQQQ Q Q Q Q PPPPP P S P S+ Q
Sbjct: 181 QQQQQQQ------------QQQQQQQQQQQPPPPPTSQHPQPASQAPPQSQPTPPHQPPP 228
Query: 275 EKTE----SSGSEQSDQEENNGSESSKRRKVRNIGSSIMRSAS 313
+ + EQ+ Q + + S + + +N S +S+S
Sbjct: 229 ASQQLPAPPAQLEQATQPQQHQPHSHPQNQTQNQPSPTQQSSS 271
>R3HD_HUMAN (Q15032) R3H domain protein 1
Length = 971
Score = 45.8 bits (107), Expect = 2e-04
Identities = 24/56 (42%), Positives = 28/56 (49%), Gaps = 8/56 (14%)
Query: 208 FITTTTPQQQQQQQPLVTLVTSTPPPQHPQPLQAQPLPPPPPPPPQPPATSITPAG 263
F +T Q QQ ++T PP HP P P PPPPPPPP PP + AG
Sbjct: 441 FQSTVVLQSPQQSGYIMTAA----PPPHPPP----PPPPPPPPPPLPPGQPVPTAG 488
Score = 33.9 bits (76), Expect = 0.71
Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 23/135 (17%)
Query: 150 KKVRDYESKSESKDHNYNFPSYWTLNKQQRKDHNL-PSNMVFEIYQAISDVLQRKNSQ-- 206
+ ++S +E+ + Y+ P W+ NL P+ + IS VL R +S
Sbjct: 295 RSTNSHQSSTEN-ELKYSEPRPWSSTDSDSSLRNLKPAVTKASSFSGIS-VLTRGDSSGS 352
Query: 207 -----RFITTTTPQQQQQQQPLVTLVTSTPPPQHPQPLQAQ----PLPPPPPPPPQPPAT 257
R T P P+V PP QP+++Q P PP P PP QP A
Sbjct: 353 SKSIGRLSKTGQPFINPDGSPVVY-----NPPMTQQPVRSQVPGPPQPPLPAPPQQPAAN 407
Query: 258 SI----TPAGSEYNH 268
I GS+++H
Sbjct: 408 HIFSQQDNLGSQFSH 422
>HXAA_MOUSE (P31310) Homeobox protein Hox-A10 (Hox-1.8)
Length = 399
Score = 45.8 bits (107), Expect = 2e-04
Identities = 25/61 (40%), Positives = 31/61 (49%), Gaps = 5/61 (8%)
Query: 231 PPPQHPQPLQAQPLPPPPPP---PPQPPATSITPAGSEYNHGDQCVKEKTES--SGSEQS 285
PPP PQP Q Q PPPPPP PQP ATS + A + C+ + + GS +
Sbjct: 117 PPPPQPQPQQQQQQPPPPPPQPPQPQPQATSCSFAQNIKEESSYCLYDAADKCPKGSAAA 176
Query: 286 D 286
D
Sbjct: 177 D 177
>ACRO_RABIT (P48038) Acrosin precursor (EC 3.4.21.10)
Length = 431
Score = 45.8 bits (107), Expect = 2e-04
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 231 PPPQHPQPLQAQPLPPPPPPPPQPPATSITP 261
PPP P P P PPPPPPPP PPA++ P
Sbjct: 354 PPPPPPPPPPPPPPPPPPPPPPPPPASTKPP 384
Score = 45.4 bits (106), Expect = 2e-04
Identities = 18/31 (58%), Positives = 18/31 (58%)
Query: 231 PPPQHPQPLQAQPLPPPPPPPPQPPATSITP 261
PPP P P P PPPPPPPP PP S P
Sbjct: 353 PPPPPPPPPPPPPPPPPPPPPPPPPPASTKP 383
Score = 44.3 bits (103), Expect = 5e-04
Identities = 19/47 (40%), Positives = 21/47 (44%)
Query: 214 PQQQQQQQPLVTLVTSTPPPQHPQPLQAQPLPPPPPPPPQPPATSIT 260
P +P PPP P P P PPPPPPPP PP + T
Sbjct: 335 PHPHPHPRPPQPPAAQAPPPPPPPPPPPPPPPPPPPPPPPPPPPAST 381
Score = 40.0 bits (92), Expect = 0.010
Identities = 20/42 (47%), Positives = 21/42 (49%), Gaps = 8/42 (19%)
Query: 231 PPPQHPQPLQAQ--------PLPPPPPPPPQPPATSITPAGS 264
P P+ PQP AQ P PPPPPPPP PP P S
Sbjct: 339 PHPRPPQPPAAQAPPPPPPPPPPPPPPPPPPPPPPPPPPPAS 380
Score = 34.3 bits (77), Expect = 0.54
Identities = 22/64 (34%), Positives = 25/64 (38%), Gaps = 6/64 (9%)
Query: 204 NSQRFITTTTPQQQQQQQPLVTLVTSTPPPQHPQPLQAQPLPP------PPPPPPQPPAT 257
N+ R I TP + P V S PP + Q P P P P PPQPPA
Sbjct: 290 NALRMIQPATPTPPTTRSPGVHQPPSAHPPWYFQHASGPPHPHPHPHPHPHPRPPQPPAA 349
Query: 258 SITP 261
P
Sbjct: 350 QAPP 353
Score = 33.9 bits (76), Expect = 0.71
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 231 PPPQHPQPLQAQPLPPPPPPPPQPPATSIT 260
PPP P P P PPPPPP P +++
Sbjct: 359 PPPPPPPPPPPPPPPPPPPPASTKPPQALS 388
Score = 32.3 bits (72), Expect = 2.1
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 214 PQQQQQQQPLVTLVTSTPPPQHPQPLQAQPLPPPPPPPPQPP 255
PQ Q P PPP P P P PPPPP +PP
Sbjct: 344 PQPPAAQAPPPPPPPPPPPPPPPPPPPPPP-PPPPPASTKPP 384
Score = 31.2 bits (69), Expect = 4.6
Identities = 24/103 (23%), Positives = 31/103 (29%), Gaps = 18/103 (17%)
Query: 8 PIPPPPINIPDPHHHHHHNHHLPLLHGTTTAPPLPSSSSAPRDYRKGNWTIQETLILITA 67
P P P P H + H P + PP P P + +
Sbjct: 297 PATPTPPTTRSPGVHQPPSAHPPWYFQHASGPPHPHPHPHPHPHPR-------------- 342
Query: 68 KKLDDERRLKASSPPPPPTTTTTPHDPSTTPRPSPAACSAASS 110
+ A +PPPPP P P P P P AS+
Sbjct: 343 ----PPQPPAAQAPPPPPPPPPPPPPPPPPPPPPPPPPPPAST 381
>ZIC5_HUMAN (Q96T25) Zinc finger protein ZIC 5 (Zinc finger protein
of the cerebellum 5)
Length = 639
Score = 45.4 bits (106), Expect = 2e-04
Identities = 20/30 (66%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 229 STPPPQHPQPLQAQPLPPPPPPPPQPPATS 258
S PPP P PL P PPPPPPPP PPA S
Sbjct: 124 SAPPPPAP-PLPPTPSPPPPPPPPPPPALS 152
Score = 38.9 bits (89), Expect = 0.022
Identities = 17/37 (45%), Positives = 20/37 (53%), Gaps = 1/37 (2%)
Query: 228 TSTPPPQHPQPLQAQPLPPPPPPPPQPPATSITPAGS 264
++ PPP P P P PPPPPPPP P + T S
Sbjct: 124 SAPPPPAPPLPPTPSP-PPPPPPPPPPALSGYTTTNS 159
Score = 38.9 bits (89), Expect = 0.022
Identities = 35/110 (31%), Positives = 44/110 (39%), Gaps = 29/110 (26%)
Query: 8 PIPPPPINIPDPHHHHHHNHHLPLLHGTTTAPPLPSSSSAPRDYRKGNWTIQETLILITA 67
P PPPP P H H HH H LP ++ A Y + I++ LI
Sbjct: 334 PAPPPP-PAPAQHPHQHHPH-------------LPGAAGAFLRYMR--QPIKQELI---C 374
Query: 68 KKLDDERRLKASSPPPPPTTTTTPHDPSTTPRPSPAACSAASSSRTSGEL 117
K +D + A PPPPP P P P P A A S+T G +
Sbjct: 375 KWIDPDE--LAGLPPPPP--------PPPPPPPPPPAGGAKPCSKTFGTM 414
Score = 38.5 bits (88), Expect = 0.029
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 243 PLPPPPPPPPQPPATSITPAGSEYNHGDQCVKEKT--ESSGSEQS 285
P PPPPPPPP PPA P + + V T G EQS
Sbjct: 388 PPPPPPPPPPPPPAGGAKPCSKTFGTMHELVNHVTVEHVGGPEQS 432
Score = 32.3 bits (72), Expect = 2.1
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 241 AQPLPPPPPPPPQPPATSITP 261
AQP PPPP PP PP S P
Sbjct: 121 AQPSAPPPPAPPLPPTPSPPP 141
Score = 31.6 bits (70), Expect = 3.5
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 79 SSPPPP-PTTTTTPHDPSTTPRPSPAACSAASSSRTSG 115
S+PPPP P TP P P P P A S +++ + G
Sbjct: 124 SAPPPPAPPLPPTPSPPPPPPPPPPPALSGYTTTNSGG 161
>SSGP_VOLCA (P21997) Sulfated surface glycoprotein 185 precursor
(SSG 185)
Length = 485
Score = 45.4 bits (106), Expect = 2e-04
Identities = 18/31 (58%), Positives = 19/31 (61%)
Query: 231 PPPQHPQPLQAQPLPPPPPPPPQPPATSITP 261
PPP P P P PPPPPPPP PP S +P
Sbjct: 269 PPPPPPPPSPPPPPPPPPPPPPPPPPPSPSP 299
Score = 44.3 bits (103), Expect = 5e-04
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 231 PPPQHPQPLQAQPLPPPPPPPPQPPATSITPA 262
PPP P P + P PPPPPPPP PP +P+
Sbjct: 267 PPPPPPPPPPSPPPPPPPPPPPPPPPPPPSPS 298
Score = 42.7 bits (99), Expect = 0.002
Identities = 16/25 (64%), Positives = 16/25 (64%)
Query: 231 PPPQHPQPLQAQPLPPPPPPPPQPP 255
PPP P P P PPPPPPPP PP
Sbjct: 264 PPPPPPPPPPPPPSPPPPPPPPPPP 288
Score = 42.7 bits (99), Expect = 0.002
Identities = 16/25 (64%), Positives = 16/25 (64%)
Query: 231 PPPQHPQPLQAQPLPPPPPPPPQPP 255
PPP P P P PPPPPPPP PP
Sbjct: 266 PPPPPPPPPPPSPPPPPPPPPPPPP 290
Score = 42.0 bits (97), Expect = 0.003
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 229 STPPPQHPQPLQAQPLPPPPPPPPQPPATSITP 261
S PP P P + P PPPPPPPP PP P
Sbjct: 247 SPRPPSPPPPSPSPPPPPPPPPPPPPPPPPSPP 279
Score = 42.0 bits (97), Expect = 0.003
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 221 QPLVTLVTSTPPP--QHPQPLQAQPLPPPPPPPPQPPATSITPA 262
QP + +PPP + P P P PPPPPPPP PP P+
Sbjct: 234 QPTASSRPPSPPPSPRPPSPPPPSPSPPPPPPPPPPPPPPPPPS 277
Score = 41.6 bits (96), Expect = 0.003
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 213 TPQQQQQQQPLVTLVTSTPP-PQHPQPLQAQPLPPPPPPPPQPPATSITP 261
+PQ +P + PP P P P P PPPPPPPP PP + P
Sbjct: 232 SPQPTASSRPPSPPPSPRPPSPPPPSPSPPPPPPPPPPPPPPPPPSPPPP 281
Score = 41.2 bits (95), Expect = 0.004
Identities = 17/34 (50%), Positives = 18/34 (52%)
Query: 231 PPPQHPQPLQAQPLPPPPPPPPQPPATSITPAGS 264
PPP P P P PPPPPPPP P P+ S
Sbjct: 274 PPPSPPPPPPPPPPPPPPPPPPSPSPPRKPPSPS 307
Score = 40.8 bits (94), Expect = 0.006
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 230 TPPPQHPQPLQAQPLPPPPPPPPQPPATSITP 261
+PPP P P P PPPPPPPP PP+ P
Sbjct: 252 SPPPPSPSPPPPPP-PPPPPPPPPPPSPPPPP 282
Score = 40.4 bits (93), Expect = 0.008
Identities = 16/27 (59%), Positives = 16/27 (59%)
Query: 229 STPPPQHPQPLQAQPLPPPPPPPPQPP 255
S PPP P P P PP PPPPP PP
Sbjct: 259 SPPPPPPPPPPPPPPPPPSPPPPPPPP 285
Score = 40.4 bits (93), Expect = 0.008
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 231 PPPQHPQPLQAQPLPPPPPPPPQPPATSITP 261
PPP P P P PPPPPPPP P+ P
Sbjct: 273 PPPPSPPPPPPPPPPPPPPPPPPSPSPPRKP 303
Score = 39.7 bits (91), Expect = 0.013
Identities = 17/34 (50%), Positives = 17/34 (50%)
Query: 231 PPPQHPQPLQAQPLPPPPPPPPQPPATSITPAGS 264
PPP P P P PPPPPPP PP P S
Sbjct: 263 PPPPPPPPPPPPPPSPPPPPPPPPPPPPPPPPPS 296
Score = 39.3 bits (90), Expect = 0.017
Identities = 15/25 (60%), Positives = 15/25 (60%)
Query: 231 PPPQHPQPLQAQPLPPPPPPPPQPP 255
PPP P P P P PPPPPP PP
Sbjct: 262 PPPPPPPPPPPPPPPSPPPPPPPPP 286
Score = 37.4 bits (85), Expect = 0.064
Identities = 15/27 (55%), Positives = 15/27 (55%)
Query: 229 STPPPQHPQPLQAQPLPPPPPPPPQPP 255
S PP P P P PPPP PPP PP
Sbjct: 257 SPSPPPPPPPPPPPPPPPPPSPPPPPP 283
Score = 37.0 bits (84), Expect = 0.083
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 231 PPPQHPQPLQAQPLPPPPPPPPQPPATSITPAGSEY 266
PPP P P + P P PP PPP P S+ PA + +
Sbjct: 292 PPPPSPSPPRKPPSPSPPVPPP-PSPPSVLPAATGF 326
Score = 36.6 bits (83), Expect = 0.11
Identities = 17/42 (40%), Positives = 22/42 (51%), Gaps = 2/42 (4%)
Query: 222 PLVTLVTSTPPPQHPQPLQAQ--PLPPPPPPPPQPPATSITP 261
P+ ++P P PQP + P PPP P PP PP S +P
Sbjct: 219 PIGPAPNNSPLPPSPQPTASSRPPSPPPSPRPPSPPPPSPSP 260
Score = 36.2 bits (82), Expect = 0.14
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 229 STPPPQHPQPLQAQPLPPPPPPPPQPPATSITP 261
S PPP P P P PPP P PP+ P + P
Sbjct: 277 SPPPPPPPPPPPPPPPPPPSPSPPRKPPSPSPP 309
>HD_RAT (P51111) Huntingtin (Huntington's disease protein homolog)
(HD protein)
Length = 3110
Score = 45.4 bits (106), Expect = 2e-04
Identities = 23/40 (57%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 215 QQQQQQQPLVTLVTSTPPPQHPQPLQAQPLPPPPPPPPQP 254
QQQQQQQP PPP PQP Q P PPPPPP P
Sbjct: 12 QQQQQQQPPPQ--PPPPPPPPPQPPQPPPQGQPPPPPPLP 49
Score = 44.3 bits (103), Expect = 5e-04
Identities = 23/40 (57%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 215 QQQQQQQPLVTLVTSTPPPQHPQPLQAQPLPPPPPPPPQP 254
QQQQQQ P PPPQ PQP Q PPPPPP P P
Sbjct: 13 QQQQQQPPPQPPPPPPPPPQPPQP-PPQGQPPPPPPLPGP 51
Score = 31.2 bits (69), Expect = 4.6
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 237 QPLQAQPLPPPPPPPPQPP 255
Q Q Q PPP PPPP PP
Sbjct: 11 QQQQQQQQPPPQPPPPPPP 29
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.310 0.126 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,304,799
Number of Sequences: 164201
Number of extensions: 2664113
Number of successful extensions: 53649
Number of sequences better than 10.0: 1433
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 786
Number of HSP's that attempted gapping in prelim test: 28356
Number of HSP's gapped (non-prelim): 12330
length of query: 381
length of database: 59,974,054
effective HSP length: 112
effective length of query: 269
effective length of database: 41,583,542
effective search space: 11185972798
effective search space used: 11185972798
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0311.7