BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0230.8
(334 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DX54_HUMAN (Q8TDD1) DEAD-box protein 54 (EC 3.6.1.-) (ATP-depend... 38 0.031
CC11_YEAST (P32458) Cell division control protein 11 38 0.041
CENF_HUMAN (P49454) CENP-F kinetochore protein (Centromere prote... 37 0.069
MYPS_MYTGA (O96064) Paramyosin 36 0.12
MUS2_BORBU (O51125) MutS2 protein 36 0.12
SX13_MOUSE (Q04891) SOX-13 protein 35 0.34
C190_DROME (Q9VJE5) Restin homolog (Cytoplasmic linker protein 1... 35 0.34
RSA1_YEAST (Q08932) Ribosome assembly 1 protein 34 0.45
MSL3_DROVI (Q9NBL2) Male-specific lethal-3 protein 34 0.45
ICE1_ARATH (Q9LSE2) Transcription factor ICE1 (Inducer of CBF ex... 34 0.45
MAPB_MOUSE (P14873) Microtubule-associated protein 1B (MAP 1B) (... 34 0.59
CBK1_KLULA (P31034) Serine/threonine-protein kinase CBK1 (EC 2.7... 34 0.59
MYSN_DROME (Q99323) Myosin heavy chain, non-muscle (Zipper prote... 33 0.77
MYSC_CHICK (P29616) Myosin heavy chain, cardiac muscle isoform (... 33 1.0
DX54_MOUSE (Q8K4L0) DEAD-box protein 54 (EC 3.6.1.-) 33 1.0
YM38_YEAST (Q03825) Hypothetical 85.0 kDa protein in HLJ1-SMP2 i... 33 1.3
XE7_HUMAN (Q02040) B-lymphocyte antigen precursor (B-lymphocyte ... 33 1.3
SOM2_SPAAU (P79894) Somatolactin 2 precursor (SL) 33 1.3
SOM1_SPAAU (P54863) Somatolactin 1 precursor (SL) 33 1.3
RGS9_HUMAN (O75916) Regulator of G-protein signaling 9 (RGS9) 33 1.3
>DX54_HUMAN (Q8TDD1) DEAD-box protein 54 (EC 3.6.1.-) (ATP-dependent
RNA helicase DP97)
Length = 881
Score = 38.1 bits (87), Expect = 0.031
Identities = 46/148 (31%), Positives = 64/148 (43%), Gaps = 26/148 (17%)
Query: 200 KWSRPIFNKSTRF------EDMRNIEDERAPFRRPSVKKPA----NKAPGMQSRDSD--- 246
KW R K RF ED + I+ E + S K+ + + RDSD
Sbjct: 731 KWDR----KKKRFVGQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQKQKIDDRDSDEEG 786
Query: 247 -LDLDLPQPRSGQSSSRQHASRPEA--TPMDFVIRPQSKVDPEEVRARAK-QASHDQQRM 302
D P+ R G+ Q ASRP A TP V RP+ K + ++ R + Q H QR
Sbjct: 787 ASDRRGPERRGGKRDRGQGASRPHAPGTPAGRV-RPELKTKQQILKQRRRAQKLHFLQR- 844
Query: 303 KMNKKLQQLRAPKKRQLQATKLSVEGRG 330
L+QL A +R++Q + GRG
Sbjct: 845 ---GGLKQLSARNRRRVQELQQGAFGRG 869
>CC11_YEAST (P32458) Cell division control protein 11
Length = 415
Score = 37.7 bits (86), Expect = 0.041
Identities = 21/63 (33%), Positives = 36/63 (56%), Gaps = 4/63 (6%)
Query: 149 LKILNDFPIDLEQIDRREQLKRSGLGKVIMFLSKSD----EEINVNRKLTKELVDKWSRP 204
L ++N L++ID + L +I +SKSD +E+ +N+KL E +D+W+ P
Sbjct: 139 LYLINPTGHGLKEIDVEFIRQLGSLVNIIPVISKSDSLTRDELKLNKKLIMEDIDRWNLP 198
Query: 205 IFN 207
I+N
Sbjct: 199 IYN 201
>CENF_HUMAN (P49454) CENP-F kinetochore protein (Centromere protein F)
(Mitosin) (AH antigen)
Length = 3210
Score = 37.0 bits (84), Expect = 0.069
Identities = 52/251 (20%), Positives = 107/251 (41%), Gaps = 12/251 (4%)
Query: 61 ERSPAEIALLVENVVAELEVTAEEDAELN-RQGKPAINKLKKLPLLTEVLSKKQLQLEFL 119
+ +P+ A VE + + EV + +L + I K K++ L ++LS ++ +L+ L
Sbjct: 1635 KETPSAPAKGVEELESLCEVYRQSLEKLEEKMESQGIMKNKEIQELEQLLSSERQELDCL 1694
Query: 120 DHGVLTLLKNWLEPLPDGSLPNINIRTAILKILNDFPIDLE----QIDRREQLKRSGLG- 174
L+ + W + L +L + A K ++LE Q+ + RS LG
Sbjct: 1695 RKQYLSENEQWQQKLTSVTLEMESKLAAEKKQTEQLSLELEVARLQLQGLDLSSRSLLGI 1754
Query: 175 KVIMFLSKSDEEINVNRKLTKELVDKWSRPIFNKSTRFEDMRNIEDERAPFRRPSVKKPA 234
+ +E +++++ T E ++ + ++ + +++ + KP
Sbjct: 1755 DTEDAIQGRNESCDISKEHTSETTERTPKHDVHQICDKDAQQDLNLDIEKITETGAVKPT 1814
Query: 235 NKAPGMQSRDSDLDLDLPQPRSGQSS--SRQHASRPEA-TPMDFVIRPQSKVDPEEVRAR 291
+ G QS D++ + G S S S P A PMDF+ ++ D ++ R
Sbjct: 1815 GECSGEQSPDTNYEPPGEDKTQGSSECISELSFSGPNALVPMDFL---GNQEDIHNLQLR 1871
Query: 292 AKQASHDQQRM 302
K+ S++ R+
Sbjct: 1872 VKETSNENLRL 1882
>MYPS_MYTGA (O96064) Paramyosin
Length = 864
Score = 36.2 bits (82), Expect = 0.12
Identities = 66/296 (22%), Positives = 116/296 (38%), Gaps = 52/296 (17%)
Query: 56 GKKKNERSPAEIALLVENVVAELEVTAEEDAELNRQG-------KPAINKLKKLPLLTEV 108
G+ +NE++ E A VA E+ AE++A L R+ + A N+LK
Sbjct: 393 GQLRNEKANLE-AECARLKVANAEL-AEKNANLERENAGLQNALREANNELKAANRTINE 450
Query: 109 LSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTAILKILNDFPIDLEQIDRREQL 168
L+ + QLE + + L++ E L D + A LN ++EQ
Sbjct: 451 LTALKAQLEAERDNLASALRDTEEALRDAEAKLAAAQAA----LNQLRSEMEQR------ 500
Query: 169 KRSGLGKVIMFLSKSDEEINVNRKLTKELVDKWSRPIFNKSTRFE------------DMR 216
L + DEEI+ RK + +D+ R + TR++ D+R
Sbjct: 501 -----------LREKDEEIDSIRKSSARAIDELQRTLVEVETRYKTEISRIKKKYETDIR 549
Query: 217 NIEDERAPFRRPSVKKPANKAPGMQSRDSDLDLDLPQPRSGQSSSRQHASRPEATPMDFV 276
+E R + + + +Q+R+ +L+L L + +R S E
Sbjct: 550 ELEGALDNANRANAEY-LKQIKSLQNRNRELELQLEEATRQLDDTRNQLSVSE------- 601
Query: 277 IRPQSKVDPEEVRARAKQASHDQQRMKMNKKLQQLRAP-KKRQLQATKLSVEGRGM 331
R + + E AR+ ++ R +L ++ + QLQ T L+ + R M
Sbjct: 602 -RKRITIQQELEDARSLLEHAERARKNAENELGEVTVRLTEVQLQVTALTNDKRRM 656
>MUS2_BORBU (O51125) MutS2 protein
Length = 780
Score = 36.2 bits (82), Expect = 0.12
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 50 NDLFKMGKKKNERSPAEIALLVENVVAEL-EVTAEEDAELNRQGKPAINKLKKLPLLTEV 108
N +F + + + A AL+ ++V E+ + + E+N + I K K L L+ E
Sbjct: 479 NLIFSIPGESYAFNVASKALIDRSIVIRANEIYSSQKTEINEILEKLIEKEKDLLLIKES 538
Query: 109 LSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTAILKILNDFPIDLEQIDRREQL 168
+ KK +Q+E + L+N+ + L L NI T +L N+F L
Sbjct: 539 MDKKLIQIELQEKE----LENFYQDL---LLREKNIETKLLNEQNEF------------L 579
Query: 169 KRSGLGKVIMFLSKSDEEINVNRKLTKELVDKWSRPIFNKSTRFEDMRNIEDERAPFR 226
K S KV+ L + +E N+N K + + + K+ + + N + A F+
Sbjct: 580 KNS--RKVLENLVREIKEGNINVAKNKAFISDLEKNVDLKTNKVNSLNNKRNVVADFK 635
>SX13_MOUSE (Q04891) SOX-13 protein
Length = 985
Score = 34.7 bits (78), Expect = 0.34
Identities = 26/87 (29%), Positives = 41/87 (46%), Gaps = 13/87 (14%)
Query: 226 RRPSVKKPANKAPGMQSRDSDLDLDLPQPRSGQSSSRQHASRPEATPMDFVIRPQSKVDP 285
+ P + P AP ++++ D P P S Q A+ +A P D P+S P
Sbjct: 12 KEPCHEAPQGAAPAVETQPGD-----PAPAS------QDAATAKAPPQDCA-SPESSGSP 59
Query: 286 EEVRARAKQA-SHDQQRMKMNKKLQQL 311
E R A +A S Q+R+ N+ LQ++
Sbjct: 60 EPKRPAASEAASGSQERLDFNRNLQEV 86
>C190_DROME (Q9VJE5) Restin homolog (Cytoplasmic linker protein 190)
(Microtubule binding protein 190) (d-CLIP-190)
Length = 1690
Score = 34.7 bits (78), Expect = 0.34
Identities = 57/310 (18%), Positives = 125/310 (39%), Gaps = 49/310 (15%)
Query: 37 APQAEEGEED-----DEINDLFKMGKKKNERSPAEIALLVENVVAELEVTAEEDAELNRQ 91
A EEG + DEI+ L K + E + +E+ N+ A+ + + L +
Sbjct: 846 AASGEEGSKTVAKLHDEISQL----KSQAEETQSELKSTQSNLEAKSKQLEAANGSLEEE 901
Query: 92 GKPAINKLKKLPLL---------------TEVLSKKQLQLEFLDHGVLTLLKNWLEPLPD 136
K + + L+++ L T+V SK + QLE + + + K + E +
Sbjct: 902 AKKSGHLLEQITKLKSEVGETQAALSSCHTDVESKTK-QLEAANAALEKVNKEYAESRAE 960
Query: 137 GSLPNINIRTAILKILNDFPIDLEQIDRREQLKRSGLGKVIMFLSKSDEEINVNRKLTKE 196
S +++ + +I + +L Q +RS + LSK +EI K
Sbjct: 961 AS----DLQDKVKEITDTLHAEL-------QAERSSSSALHTKLSKFSDEIATGHKELTS 1009
Query: 197 LVDKWSRPIFNKSTRFEDMR----NIEDERAPFRRPSVKKPANKAPGMQSRDSDLDLDLP 252
D WS+ + K +++R + +D + + +K + +++ ++
Sbjct: 1010 KADAWSQEMLQKEKELQELRQQLQDSQDSQTKLKAEGERKEKSFEESIKNLQEEV----- 1064
Query: 253 QPRSGQSSSRQHASRPEATPMDFVIRPQSKVDPEEVRARAKQASHDQQRMKMNKKLQQLR 312
++ + + ++ + T D ++ + ++ E++ + K AS D Q++ K L +
Sbjct: 1065 --TKAKTENLELSTGTQTTIKD--LQERLEITNAELQHKEKMASEDAQKIADLKTLVEAI 1120
Query: 313 APKKRQLQAT 322
+ AT
Sbjct: 1121 QVANANISAT 1130
>RSA1_YEAST (Q08932) Ribosome assembly 1 protein
Length = 381
Score = 34.3 bits (77), Expect = 0.45
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 157 IDLEQIDRREQLKRSGLGKVIMFLSKS-----DEEINVNRKLTKELVDKWSRPIF-NKST 210
+ LE DR EQL+ GLGKV++ S DE++ +K +E W I NK
Sbjct: 207 LGLEDDDRDEQLESEGLGKVVLVPGTSIALITDEDV---KKWREERKKMWLLKISNNKQK 263
Query: 211 RFEDMRNIEDERAPFRRPSVKKPANK 236
++M EDE +PS+ K + K
Sbjct: 264 HMQEMGIKEDELK--SQPSIFKESRK 287
>MSL3_DROVI (Q9NBL2) Male-specific lethal-3 protein
Length = 543
Score = 34.3 bits (77), Expect = 0.45
Identities = 35/151 (23%), Positives = 68/151 (44%), Gaps = 17/151 (11%)
Query: 180 LSKSDEEINVNRKLTKELVDKWSRPIFNKSTRFEDMRNIEDERAPFRRPSVKKPANKAPG 239
L K +EE NRKL +EL + K+ + + +D + P S KK +
Sbjct: 72 LLKDNEE---NRKLQRELAEAAQ---LQKTGGY----SYKDSKTPTLPSSKKKRLARGGH 121
Query: 240 MQSRDSD-LDLDLPQPRSGQSSSRQHASRPEATPMDFVI-----RPQSKVDPEEVR-ARA 292
++ +D LD+ LP + + + H P A P+D + P+ ++ ++ R AR+
Sbjct: 122 VEDPTADPLDISLPSSKKKRLARGGHVEDPTADPLDISLAHLPATPKPELPAQQKRGARS 181
Query: 293 KQASHDQQRMKMNKKLQQLRAPKKRQLQATK 323
+ S ++ R + + + +K+Q +K
Sbjct: 182 RDGSGNRSRDGSGNRSRDNSSGRKKQRDKSK 212
>ICE1_ARATH (Q9LSE2) Transcription factor ICE1 (Inducer of CBF
expression 1) (Basic helix-loop-helix protein 116)
(bHLH116) (AtbHLH116)
Length = 494
Score = 34.3 bits (77), Expect = 0.45
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 21/141 (14%)
Query: 2 DQEGVRNLDDDNFIDDTGVEPGFYGNYNEPSSPGEAPQAEEGEEDDEINDLFKMGKKKNE 61
+ G+R DD +D+TG+E NY E+ + E + E + GK K +
Sbjct: 251 ESSGMRRFSDDGDMDETGIEVSGL-NY-------ESDEINESGKAAESVQIGGGGKGKKK 302
Query: 62 RSPAEIALLVENVVAELEVTAEEDAELN--RQGKPAINKLKKLPLLTEVLSKKQLQLEFL 119
PA +N++AE + + L R P I+K+ + +L + + + L+ +
Sbjct: 303 GMPA------KNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRI 356
Query: 120 DHGVLTLLKNWLEPLPDGSLP 140
+ L N LE P GSLP
Sbjct: 357 ND-----LHNELESTPPGSLP 372
>MAPB_MOUSE (P14873) Microtubule-associated protein 1B (MAP 1B)
(MAP1.2) (MAP1(X)) [Contains: MAP1 light chain LC1]
Length = 2464
Score = 33.9 bits (76), Expect = 0.59
Identities = 23/71 (32%), Positives = 35/71 (48%), Gaps = 2/71 (2%)
Query: 35 GEAPQAEE-GEEDDEINDLFKMGKKKNERSPAEIALLVENVVAELEVTAEEDAELNRQGK 93
GEA Q+EE GEE+D+ D + G + ++ + + V + AE VT E+ L K
Sbjct: 1008 GEAEQSEEEGEEEDKAEDAREEGYEPDKTEAEDYVMAVADKAAEAGVTEEQYGYLGTSAK 1067
Query: 94 -PAINKLKKLP 103
P I + P
Sbjct: 1068 QPGIQSPSREP 1078
>CBK1_KLULA (P31034) Serine/threonine-protein kinase CBK1 (EC
2.7.1.37)
Length = 718
Score = 33.9 bits (76), Expect = 0.59
Identities = 24/89 (26%), Positives = 39/89 (42%), Gaps = 6/89 (6%)
Query: 237 APGMQSRDSDLDLDLPQPRSGQSSSRQHASRP-----EATPMDFVIRPQSKVDPEEVRAR 291
+PG S S+ L +P P Q + +Q R + TP F + QS P+ +
Sbjct: 112 SPGQYSVASESGLYIPPPLQQQQNGQQSPVRSVHQQTQQTPPTFT-QQQSSSQPQSPQHN 170
Query: 292 AKQASHDQQRMKMNKKLQQLRAPKKRQLQ 320
A QQ+ + ++ QQ + +RQ Q
Sbjct: 171 TYHAQQQQQQQQQQQQTQQAQQQGQRQTQ 199
>MYSN_DROME (Q99323) Myosin heavy chain, non-muscle (Zipper protein)
(Myosin II) (Non-muscle MHC)
Length = 2057
Score = 33.5 bits (75), Expect = 0.77
Identities = 37/118 (31%), Positives = 57/118 (47%), Gaps = 25/118 (21%)
Query: 16 DDTGVEPGFYGNYNEPSSPGEAPQAEEGEEDDEINDLFKMGKKKNERSPAEIALLVENVV 75
++T + G + S EA Q E+ EEDDE K+ ER AE+ ++
Sbjct: 1410 EETRQKLGLSSKLRQIESEKEALQ-EQLEEDDE-------AKRNYERKLAEVTTQMQ--- 1458
Query: 76 AELEVTAEEDAELNR---QGKPAINK--------LKKLPLLTEVL--SKKQLQLEFLD 120
E++ AEEDA+L + +GK +NK +K+L + L SKK++Q E D
Sbjct: 1459 -EIKKKAEEDADLAKELEEGKKRLNKDIEALERQVKELIAQNDRLDKSKKKIQSELED 1515
>MYSC_CHICK (P29616) Myosin heavy chain, cardiac muscle isoform
(Fragment)
Length = 1102
Score = 33.1 bits (74), Expect = 1.0
Identities = 58/238 (24%), Positives = 103/238 (42%), Gaps = 36/238 (15%)
Query: 41 EEGEEDDEINDLFKMGKKKNERSPAEIALLVENVVAELEVTAEEDAELNRQGKPAINKLK 100
E E+++E+N K+K E +E+ + + +LE+T A++ ++ NK+K
Sbjct: 90 ERVEDEEEMNSELTSKKRKLEDECSEL----KKDIDDLEITL---AKVEKEKHATENKVK 142
Query: 101 KLPLLTEVLSKKQLQLEFLDHGV--LTLLKNWLEPLPDGSLPNINIRTAILKILNDFPID 158
LTE ++ LD + LT K L+ L ++ + L+ +
Sbjct: 143 N---LTE-------EMATLDENISKLTKEKKSLQEAHQQVLDDLQAEEDKVNTLSKAKVK 192
Query: 159 LEQ--IDRREQLKRSGLGKVIMFLSKSDEEINVNRKLTKELV-----DKWSRPIFNKSTR 211
LEQ D L++ KV M L ++ ++ + KLT+E V DK K
Sbjct: 193 LEQQVDDLEGSLEQE--KKVRMDLERAKRKLEGDLKLTQESVMDLENDKLQMEEKLKKKE 250
Query: 212 FEDMR---NIEDERAPFRRPSVKKPANKAPGMQSRDSDLDLDLPQPRSGQSSSRQHAS 266
FE + IEDE+A V + K +Q+R +L+ +L R+ ++ + S
Sbjct: 251 FEMSQLNSKIEDEQA-----IVMQLQKKIKELQARIEELEEELEAERAARAKVEKQRS 303
>DX54_MOUSE (Q8K4L0) DEAD-box protein 54 (EC 3.6.1.-)
Length = 874
Score = 33.1 bits (74), Expect = 1.0
Identities = 36/146 (24%), Positives = 56/146 (37%), Gaps = 21/146 (14%)
Query: 200 KWSRPIFNKSTRF------EDMRNIEDERAPFRRPSVKKPANKAPGMQSRDSDLDLDLPQ 253
KW R K RF ED + I+ E F S K+ + + + D D +
Sbjct: 723 KWDR----KKKRFVGQSGQEDKKKIKTESGRFISSSYKRDLYQKWKQKQKIDDRDSEEEG 778
Query: 254 P---------RSGQSSSRQHASRPEATPMDFVIRPQSKVDPEEVRARAKQASHDQQRMKM 304
P R G+ Q S+P A+ + E++ + +QA +QR
Sbjct: 779 PSNQRGPGPRRGGKRGRSQGTSQPRASSVPAGRMRSELKTKEQILKQRRQAQ--KQRFLQ 836
Query: 305 NKKLQQLRAPKKRQLQATKLSVEGRG 330
L+QL A +R+ Q + GRG
Sbjct: 837 RGGLKQLSARNRRRAQELRQGAFGRG 862
>YM38_YEAST (Q03825) Hypothetical 85.0 kDa protein in HLJ1-SMP2
intergenic region
Length = 758
Score = 32.7 bits (73), Expect = 1.3
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 250 DLPQPRSGQSSSRQHASRPEATPMDFVIRPQSKVDPEEVRARAKQASHDQQRMKMNKKLQ 309
DL P Q SS+Q +P+ P P++ + + +Q QQ+ + ++ Q
Sbjct: 267 DLQSPAQPQQSSQQQIQQPQHQPQH---------QPQQQQQQQQQQQQQQQQQQQQQQQQ 317
Query: 310 QLRAPKKRQLQATKLSVEGRGMIKY 334
Q + + +Q Q T + M+ +
Sbjct: 318 QQQQQQHQQQQQTPYPIVNPQMVPH 342
>XE7_HUMAN (Q02040) B-lymphocyte antigen precursor (B-lymphocyte
surface antigen) (721P) (Protein XE7)
Length = 695
Score = 32.7 bits (73), Expect = 1.3
Identities = 20/78 (25%), Positives = 43/78 (54%), Gaps = 4/78 (5%)
Query: 255 RSGQSSSRQHASRPEATPMDFVIRPQSKVDPEEVRARAKQASHDQQRMKMNKKLQQLRAP 314
R ++ RQ A + ++ + R + + EE + +Q D++ + KKL++L+A
Sbjct: 291 REKEAEERQRAEERKQKELEELERERKR---EEKLRKREQKQRDRELRRNQKKLEKLQAE 347
Query: 315 KKRQLQATKLSVEGRGMI 332
+++QLQ K+ +E R ++
Sbjct: 348 EQKQLQ-EKIKLEERKLL 364
>SOM2_SPAAU (P79894) Somatolactin 2 precursor (SL)
Length = 231
Score = 32.7 bits (73), Expect = 1.3
Identities = 17/46 (36%), Positives = 28/46 (59%), Gaps = 2/46 (4%)
Query: 89 NRQGKPAINKLKKLPLLTEVLSKKQLQLEFLDHGVLTLLKNWLEPL 134
N+ G P I K LP+ + +Q+ ++L H VL L+++W+EPL
Sbjct: 83 NQAGYPCITKA--LPIPSSKSEIQQISDKWLLHSVLMLVQSWIEPL 126
>SOM1_SPAAU (P54863) Somatolactin 1 precursor (SL)
Length = 231
Score = 32.7 bits (73), Expect = 1.3
Identities = 17/46 (36%), Positives = 28/46 (59%), Gaps = 2/46 (4%)
Query: 89 NRQGKPAINKLKKLPLLTEVLSKKQLQLEFLDHGVLTLLKNWLEPL 134
N+ G P I K LP+ + +Q+ ++L H VL L+++W+EPL
Sbjct: 83 NQAGYPCITKA--LPIPSSKSEIQQISDKWLLHSVLMLVQSWIEPL 126
>RGS9_HUMAN (O75916) Regulator of G-protein signaling 9 (RGS9)
Length = 674
Score = 32.7 bits (73), Expect = 1.3
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 252 PQPRSGQSSSRQHASRPEATPMDFVIRPQSKVDPEEVRARAKQASHDQQR 301
P P S SSS + +P A+P F+ RP + + P +R + +S +Q+
Sbjct: 490 PSPSSPFSSSCRSPRKPFASPSRFIRRPSTTICPSPIRVALESSSGLEQK 539
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.312 0.133 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,106,912
Number of Sequences: 164201
Number of extensions: 1805853
Number of successful extensions: 5727
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 5681
Number of HSP's gapped (non-prelim): 109
length of query: 334
length of database: 59,974,054
effective HSP length: 111
effective length of query: 223
effective length of database: 41,747,743
effective search space: 9309746689
effective search space used: 9309746689
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0230.8