BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0230.6
         (1145 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GLB1_XANAC (Q8PR13) 1,4-alpha-glucan branching enzyme 1 (EC 2.4....    35  1.5
GLB1_XANCP (Q8PE48) 1,4-alpha-glucan branching enzyme 1 (EC 2.4....    34  2.0
SYM_METJA (Q58659) Methionyl-tRNA synthetase (EC 6.1.1.10) (Meth...    32  9.8
ASPM_HUMAN (Q8IZT6) Abnormal spindle-like microcephaly-associate...    32  9.8

>GLB1_XANAC (Q8PR13) 1,4-alpha-glucan branching enzyme 1 (EC
           2.4.1.18) (Glycogen branching enzyme 1) (BE 1)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase 1)
          Length = 724

 Score = 34.7 bits (78), Expect = 1.5
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 40  WCPCTTCANCKSLSR---TSVYEHLTNPRRGFLRGYKQWIF-HGEKPVASSSTIEEPEHT 95
           W P     +   L+    T++YEH  +PR GF R +   I+ HG + V+        E  
Sbjct: 334 WVPAHFPTDAHGLAHFDGTALYEH-ADPREGFHRDWNTLIYNHGRREVSGFLIASAMEFL 392

Query: 96  EMEHDMDGLIHDVLASHTAEDPLFDDGERNPQV 128
           +  H +DGL  D +AS    D   + GE  P +
Sbjct: 393 QRYH-VDGLRVDAVASMLYRDYSRNAGEWIPNI 424


>GLB1_XANCP (Q8PE48) 1,4-alpha-glucan branching enzyme 1 (EC
           2.4.1.18) (Glycogen branching enzyme 1) (BE 1)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase 1)
          Length = 724

 Score = 34.3 bits (77), Expect = 2.0
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 40  WCPCTTCANCKSLSR---TSVYEHLTNPRRGFLRGYKQWIF-HGEKPVASSSTIEEPEHT 95
           W P     +   L+    T++YEH  +PR GF R +   I+ HG + V+        E  
Sbjct: 334 WVPAHFPTDAHGLAHFDGTALYEH-ADPREGFHRDWNTLIYNHGRREVSGFLIASALEFL 392

Query: 96  EMEHDMDGLIHDVLASHTAEDPLFDDGERNPQV 128
           +  H +DGL  D +AS    D   + GE  P +
Sbjct: 393 QRYH-VDGLRVDAVASMLYRDYSRNAGEWVPNI 424


>SYM_METJA (Q58659) Methionyl-tRNA synthetase (EC 6.1.1.10)
           (Methionine--tRNA ligase) (MetRS)
          Length = 651

 Score = 32.0 bits (71), Expect = 9.8
 Identities = 26/85 (30%), Positives = 37/85 (42%), Gaps = 23/85 (27%)

Query: 80  EKPVASSSTIEEPEHTEMEHDMD--GLIHDVLASHTAEDPLFDDGERNPQVE-ENANKFY 136
           EK   S   I E  H E++ D+D  G+  D              G+ + Q+  E A +FY
Sbjct: 60  EKEGKSPEEIVEKYHNEIKEDLDLLGVEFDAF------------GKTHSQIHIETAQEFY 107

Query: 137 RLVKDN--------EQILYPNCKKY 153
             +K+N        EQ   PNCKK+
Sbjct: 108 LKLKENGYIYEKEIEQFYCPNCKKF 132


>ASPM_HUMAN (Q8IZT6) Abnormal spindle-like microcephaly-associated
           protein (Abnormal spindle protein homolog) (Asp homolog)
          Length = 3477

 Score = 32.0 bits (71), Expect = 9.8
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 552 LRHNLDVMHIEKNVCDNIIGTLLNQEGKSKDNYKARADLVDMGIRSILHPQPSPNTNTML 611
           ++ N   +H+E  +   I   +L+ +   KDNY    DL    +  IL P      N  L
Sbjct: 344 MKDNSQPVHLESTIAHEIYQKILSPDSFIKDNYGLNQDLESESVNPILSP------NQFL 397

Query: 612 LPRACYQMTTKE 623
                Y  T+++
Sbjct: 398 KDNMAYMCTSQQ 409


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.336    0.147    0.497 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,596,583
Number of Sequences: 164201
Number of extensions: 5654854
Number of successful extensions: 20944
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 20941
Number of HSP's gapped (non-prelim): 6
length of query: 1145
length of database: 59,974,054
effective HSP length: 121
effective length of query: 1024
effective length of database: 40,105,733
effective search space: 41068270592
effective search space used: 41068270592
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 71 (32.0 bits)