BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0143c.1
(197 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RF1_RICCN (Q92HK9) Peptide chain release factor 1 (RF-1) 189 4e-48
RF1_RICPR (Q9ZD21) Peptide chain release factor 1 (RF-1) 188 8e-48
RF1_BRUME (Q8YJ95) Peptide chain release factor 1 (RF-1) 182 3e-46
RF1_BRUSU (Q8FYK3) Peptide chain release factor 1 (RF-1) 181 7e-46
RF1_RHILO (Q98G93) Peptide chain release factor 1 (RF-1) 179 5e-45
RF1_CAUCR (Q9A9V5) Peptide chain release factor 1 (RF-1) 177 2e-44
RF1_BRAJA (Q89XT9) Peptide chain release factor 1 (RF-1) 176 3e-44
RF1_RHIME (Q92MK5) Peptide chain release factor 1 (RF-1) 174 9e-44
RF1_THETN (Q8RD98) Peptide chain release factor 1 (RF-1) 173 3e-43
RF1_HELHP (Q7VFA0) Peptide chain release factor 1 (RF-1) 172 3e-43
RF1_BORBU (O51214) Peptide chain release factor 1 (RF-1) 172 4e-43
RF1_AGRT5 (Q8U8B8) Peptide chain release factor 1 (RF-1) 172 6e-43
RF1_LACPL (Q88UT2) Peptide chain release factor 1 (RF-1) 167 1e-41
RF1_WOLSU (Q7M9M4) Peptide chain release factor 1 (RF-1) 167 1e-41
RF1_CHLMU (Q9PL16) Peptide chain release factor 1 (RF-1) 167 1e-41
RF1_OCEIH (Q8EM60) Peptide chain release factor 1 (RF-1) 166 2e-41
RF1_LEPIN (Q8F9S6) Peptide chain release factor 1 (RF-1) 166 3e-41
RF1_AQUAE (O67032) Peptide chain release factor 1 (RF-1) 166 4e-41
RF1_STAAW (P66020) Peptide chain release factor 1 (RF-1) 165 7e-41
RF1_STAAN (P66019) Peptide chain release factor 1 (RF-1) 165 7e-41
>RF1_RICCN (Q92HK9) Peptide chain release factor 1 (RF-1)
Length = 355
Score = 189 bits (480), Expect = 4e-48
Identities = 88/152 (57%), Positives = 122/152 (79%)
Query: 36 SSSGSVGLTNEIMKVDVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQ 95
+S+ +V + E +VD++++++DL++DTYR+ G+GGQH NTT+SAVRITHIPTGI VA+Q
Sbjct: 197 TSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQ 256
Query: 96 DERSQHMNKAKALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVT 155
DE+SQH NKAKALKIL A++YE ER + R+ R Q+GSGDRSERIRTYNFPQGRV+
Sbjct: 257 DEKSQHKNKAKALKILRARIYEEERRKKEQERADSRRGQVGSGDRSERIRTYNFPQGRVS 316
Query: 156 DHRVGITYHSIDDVMQGENLDVFIDALLLREE 187
DHR+ +T + ID+V++ LD F++AL+ +E
Sbjct: 317 DHRINLTLYKIDEVVKNGQLDEFVEALIADDE 348
>RF1_RICPR (Q9ZD21) Peptide chain release factor 1 (RF-1)
Length = 355
Score = 188 bits (477), Expect = 8e-48
Identities = 89/152 (58%), Positives = 121/152 (79%)
Query: 36 SSSGSVGLTNEIMKVDVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQ 95
+S+ +V + E +D++++++DL++DTYR+ G+GGQH NTT+SAVRITHIPTGI VA+Q
Sbjct: 197 TSAATVAVLPEAEGIDIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQ 256
Query: 96 DERSQHMNKAKALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVT 155
DE+SQH NKAKALKIL A+LYE +R + RS R Q+GSGDRSERIRTYNFPQGRV+
Sbjct: 257 DEKSQHKNKAKALKILRARLYEEKRRQKEQERSDSRRGQVGSGDRSERIRTYNFPQGRVS 316
Query: 156 DHRVGITYHSIDDVMQGENLDVFIDALLLREE 187
DHR+ +T + ID+V++ LD FI+AL+ +E
Sbjct: 317 DHRINLTLYKIDEVVKHGQLDEFIEALIANDE 348
>RF1_BRUME (Q8YJ95) Peptide chain release factor 1 (RF-1)
Length = 359
Score = 182 bits (463), Expect = 3e-46
Identities = 86/148 (58%), Positives = 120/148 (80%), Gaps = 2/148 (1%)
Query: 36 SSSGSVGLTNEIMKVDVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQ 95
+S+ +V + E +D++++NED+++DT R+ G+GGQH NTT+SAVRITHIPTGI+V +Q
Sbjct: 199 TSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTTDSAVRITHIPTGIMV-VQ 257
Query: 96 DERSQHMNKAKALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVT 155
E+SQH N+A+A++IL A+LY+MER + S RS+ R Q+GSGDRSERIRTYNFPQGRVT
Sbjct: 258 AEKSQHQNRARAMQILRARLYDMERQKAESERSQARRSQVGSGDRSERIRTYNFPQGRVT 317
Query: 156 DHRVGITYHSIDDVMQGENLDVFIDALL 183
DHR+ +T + +D VM+GE LD +DAL+
Sbjct: 318 DHRINLTLYKLDRVMEGE-LDELVDALI 344
>RF1_BRUSU (Q8FYK3) Peptide chain release factor 1 (RF-1)
Length = 359
Score = 181 bits (460), Expect = 7e-46
Identities = 85/148 (57%), Positives = 120/148 (80%), Gaps = 2/148 (1%)
Query: 36 SSSGSVGLTNEIMKVDVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQ 95
+S+ +V + E +D++++NED+++DT R+ G+GGQH NTT+SAVRITHIPTGI+V +Q
Sbjct: 199 TSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTTDSAVRITHIPTGIMV-VQ 257
Query: 96 DERSQHMNKAKALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVT 155
E+SQH N+A+A++IL A+LY+MER + S RS+ R Q+GSGDRSERIRTYNFPQGRVT
Sbjct: 258 AEKSQHQNRARAMQILRARLYDMERQKAESERSQARRSQVGSGDRSERIRTYNFPQGRVT 317
Query: 156 DHRVGITYHSIDDVMQGENLDVFIDALL 183
DHR+ +T + +D VM+G+ LD +DAL+
Sbjct: 318 DHRINLTLYKLDRVMEGD-LDELVDALI 344
>RF1_RHILO (Q98G93) Peptide chain release factor 1 (RF-1)
Length = 359
Score = 179 bits (453), Expect = 5e-45
Identities = 86/157 (54%), Positives = 121/157 (76%), Gaps = 2/157 (1%)
Query: 36 SSSGSVGLTNEIMKVDVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQ 95
+S+ +V + E +VD++++ ED+++DT R+ GSGGQH NTT+SAVRITH+PTGI+V +Q
Sbjct: 199 TSAATVAVLPEAEEVDIEIRAEDIRIDTMRASGSGGQHVNTTDSAVRITHLPTGIMV-VQ 257
Query: 96 DERSQHMNKAKALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVT 155
E+SQH N+AKA++IL A+LY++ER + RS+ R Q+GSGDRSERIRTYNFPQGRVT
Sbjct: 258 AEKSQHQNRAKAMQILRARLYDLERSKADEERSESRKSQVGSGDRSERIRTYNFPQGRVT 317
Query: 156 DHRVGITYHSIDDVMQGENLDVFIDALLLREEMDAVA 192
DHR+ +T + +D VM GE LD +DAL+ + +A
Sbjct: 318 DHRINLTLYKLDRVMMGE-LDEIVDALIADHQSKLLA 353
>RF1_CAUCR (Q9A9V5) Peptide chain release factor 1 (RF-1)
Length = 356
Score = 177 bits (448), Expect = 2e-44
Identities = 83/162 (51%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
Query: 36 SSSGSVGLTNEIMKVDVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQ 95
+S+ +V + E V++++K DL++DTYRS G+GGQH N T+SAVRITH+PTG++V
Sbjct: 194 TSAATVAVLPEAEDVEIEIKESDLRIDTYRSSGAGGQHVNKTDSAVRITHLPTGVVVT-S 252
Query: 96 DERSQHMNKAKALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVT 155
E+SQH N+A+A+K L A+LY+M+R L S RS+ R Q+GSGDRSERIRTYNFPQGRVT
Sbjct: 253 SEKSQHQNRARAMKNLKARLYDMQREALDSARSEARKSQVGSGDRSERIRTYNFPQGRVT 312
Query: 156 DHRVGITYHSIDDVMQGENLDVFIDALLLREEMDAVASFTSS 197
DHR+ +T +++ +M+G+ LD I+ L+ ++ + +AS S
Sbjct: 313 DHRINLTLYNLARIMEGDALDDVINPLIAEDQAERLASLEES 354
>RF1_BRAJA (Q89XT9) Peptide chain release factor 1 (RF-1)
Length = 361
Score = 176 bits (446), Expect = 3e-44
Identities = 83/158 (52%), Positives = 116/158 (72%)
Query: 36 SSSGSVGLTNEIMKVDVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQ 95
+S+ +V + E+ VDV +KN+DL+++T R+ G+GGQH N T SA+RITHIPTGI+V +Q
Sbjct: 199 TSAATVAVLPEVEDVDVDIKNDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQ 258
Query: 96 DERSQHMNKAKALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVT 155
D RSQH N+A A+ IL +++Y+ ER R+ + RS R E++GSGDRSERIRTYNFPQGRVT
Sbjct: 259 DSRSQHKNRASAMNILRSRIYDAERQRVDAARSAERKEKVGSGDRSERIRTYNFPQGRVT 318
Query: 156 DHRVGITYHSIDDVMQGENLDVFIDALLLREEMDAVAS 193
DHR+ +T + + V+ GE L IDAL + +A+
Sbjct: 319 DHRINLTLYKLPQVIAGEALGELIDALTTEHQAAQLAA 356
>RF1_RHIME (Q92MK5) Peptide chain release factor 1 (RF-1)
Length = 360
Score = 174 bits (442), Expect = 9e-44
Identities = 84/148 (56%), Positives = 116/148 (77%), Gaps = 2/148 (1%)
Query: 36 SSSGSVGLTNEIMKVDVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQ 95
+S+ +V + E ++D+ ++ ED++VDT RS G+GGQH NTT+SAVRITHIPTGI+V
Sbjct: 199 TSAATVAVLPEAEEIDIDVRPEDIRVDTMRSSGAGGQHVNTTDSAVRITHIPTGIVVT-S 257
Query: 96 DERSQHMNKAKALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVT 155
E+SQH N+AKA+++L ++LY+MER R S RS R Q+GSGDRSERIRTYNFPQGR+T
Sbjct: 258 SEKSQHQNRAKAMQVLRSRLYDMERQRADSERSADRRSQVGSGDRSERIRTYNFPQGRLT 317
Query: 156 DHRVGITYHSIDDVMQGENLDVFIDALL 183
DHR+ +T + +D +M+GE +D +DALL
Sbjct: 318 DHRINLTLYKLDRMMEGE-IDDVVDALL 344
>RF1_THETN (Q8RD98) Peptide chain release factor 1 (RF-1)
Length = 356
Score = 173 bits (438), Expect = 3e-43
Identities = 84/160 (52%), Positives = 116/160 (72%), Gaps = 1/160 (0%)
Query: 36 SSSGSVGLTNEIMKVDVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQ 95
+S+ +V + E +VDV++ D+K+D +RS G GGQ NTT+SAVR+THIPTGI+V Q
Sbjct: 196 TSTATVAVLPEAEEVDVEINPNDIKIDVFRSSGHGGQSVNTTDSAVRVTHIPTGIVVTCQ 255
Query: 96 DERSQHMNKAKALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVT 155
DERSQ N+ +ALKIL AKLYEM ++ R Q+G+G+RSERIRTYNFPQGRVT
Sbjct: 256 DERSQIQNRERALKILRAKLYEMALKEQQREIAEARKSQVGTGERSERIRTYNFPQGRVT 315
Query: 156 DHRVGITYHSIDDVMQGENLDVFIDALLLREEMDAVASFT 195
DHR+G+T + + +V+ GE LD IDAL+L ++ + + + T
Sbjct: 316 DHRIGLTLYKLQEVLDGE-LDEIIDALILNDQAEKLKNMT 354
>RF1_HELHP (Q7VFA0) Peptide chain release factor 1 (RF-1)
Length = 355
Score = 172 bits (437), Expect = 3e-43
Identities = 83/158 (52%), Positives = 116/158 (72%)
Query: 36 SSSGSVGLTNEIMKVDVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQ 95
+S+ +V + E+ V++ + DLK+D +RSGG GGQ NTT+SAVRITHIPTGI V++Q
Sbjct: 195 TSAITVAIMPEVDDVEININPNDLKIDVFRSGGHGGQSVNTTDSAVRITHIPTGISVSMQ 254
Query: 96 DERSQHMNKAKALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVT 155
DE+SQH NK KALKIL A+LYE E ++ + R Q+GSGDRSERIRTYN+PQ R+T
Sbjct: 255 DEKSQHKNKDKALKILKARLYEAELEAQNAQNKEARKTQVGSGDRSERIRTYNYPQNRLT 314
Query: 156 DHRVGITYHSIDDVMQGENLDVFIDALLLREEMDAVAS 193
DHR+G+T +S++++M G LD FI+ L+ + A+ +
Sbjct: 315 DHRIGLTLYSLEEIMLGGLLDEFINPLIAHAQSQAMGN 352
>RF1_BORBU (O51214) Peptide chain release factor 1 (RF-1)
Length = 357
Score = 172 bits (436), Expect = 4e-43
Identities = 81/149 (54%), Positives = 111/149 (74%), Gaps = 1/149 (0%)
Query: 36 SSSGSVGLTNEIMKVDVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQ 95
+S+ +V + I + ++ + +DL++D YRS G+GGQH NTT+SAVRITH+PTGI+V Q
Sbjct: 198 TSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVRITHLPTGIVVQCQ 257
Query: 96 DERSQHMNKAKALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVT 155
+ERSQH NK +A+KIL A+LYE E + RS R +Q+GSGDRSERIRTYNFPQ R+T
Sbjct: 258 NERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNRKQQVGSGDRSERIRTYNFPQNRIT 317
Query: 156 DHRVGITYHSIDDVMQGENLDVFIDALLL 184
DHR IT + +++ MQGE LD +D L++
Sbjct: 318 DHRANITLYKLEEFMQGE-LDPLLDPLMI 345
>RF1_AGRT5 (Q8U8B8) Peptide chain release factor 1 (RF-1)
Length = 360
Score = 172 bits (435), Expect = 6e-43
Identities = 80/148 (54%), Positives = 117/148 (79%), Gaps = 2/148 (1%)
Query: 36 SSSGSVGLTNEIMKVDVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQ 95
+S+ +V + E +DV+++ ED+++DT R+ G+GGQH NTT+SAVRITH+PTG+IV
Sbjct: 199 TSAATVAVLPEAEDIDVEIRPEDIRIDTMRASGAGGQHVNTTDSAVRITHLPTGLIVT-S 257
Query: 96 DERSQHMNKAKALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVT 155
E+SQH N+AKA+++L ++LY++ER ++ S RS R Q+GSGDRSERIRTYNFPQGRVT
Sbjct: 258 SEKSQHQNRAKAMQVLRSRLYDIERQKVDSERSADRKSQVGSGDRSERIRTYNFPQGRVT 317
Query: 156 DHRVGITYHSIDDVMQGENLDVFIDALL 183
DHR+ +T + +D V++GE +D +DAL+
Sbjct: 318 DHRINLTLYKLDRVIEGE-IDELVDALI 344
>RF1_LACPL (Q88UT2) Peptide chain release factor 1 (RF-1)
Length = 360
Score = 167 bits (424), Expect = 1e-41
Identities = 82/170 (48%), Positives = 119/170 (69%), Gaps = 4/170 (2%)
Query: 27 SLSHTHTHSSSSGSVGLTNEIMKVDVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRITHI 86
S HT S+ +VG+ E VD+ + +D++ D +RS G+GGQH N T+SAVR+TH+
Sbjct: 194 SAGRVHT---STATVGVMPEAQDVDIDIDQKDIRTDVFRSSGAGGQHINKTSSAVRMTHL 250
Query: 87 PTGIIVAIQDERSQHMNKAKALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRT 146
PTGI+V++QD+RSQ N+AKA++IL A++Y+ + R + R +G+GDRSERIRT
Sbjct: 251 PTGIVVSMQDQRSQQQNRAKAMEILRARVYDYYQSREQNEYDAERKSAVGTGDRSERIRT 310
Query: 147 YNFPQGRVTDHRVGITYHSIDDVMQGENLDVFIDALLLREEMDAVASFTS 196
YNFPQ RVTDHR+G+T + +D VM GE LD IDAL+L ++ + + T+
Sbjct: 311 YNFPQNRVTDHRIGLTLNKLDRVMNGE-LDEVIDALVLADQAEKMERLTN 359
>RF1_WOLSU (Q7M9M4) Peptide chain release factor 1 (RF-1)
Length = 355
Score = 167 bits (423), Expect = 1e-41
Identities = 81/148 (54%), Positives = 109/148 (72%)
Query: 36 SSSGSVGLTNEIMKVDVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQ 95
+S+ +V + E+ V+V + DLK+D +RSGG GGQ NTT+SAVRITH+PTGI V++Q
Sbjct: 195 TSAITVAIMPEVDDVEVNINPNDLKIDVFRSGGHGGQSVNTTDSAVRITHLPTGISVSMQ 254
Query: 96 DERSQHMNKAKALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVT 155
DE+SQH NK KALKIL A+LYE E S S R Q+GSGDRSERIRTYN+PQ R+T
Sbjct: 255 DEKSQHKNKDKALKILKARLYEAELEAKLSENSAARKLQVGSGDRSERIRTYNYPQNRLT 314
Query: 156 DHRVGITYHSIDDVMQGENLDVFIDALL 183
DHR+G+T +S++++M N D +D ++
Sbjct: 315 DHRIGLTLYSLEEIMLSGNFDQVVDPIV 342
>RF1_CHLMU (Q9PL16) Peptide chain release factor 1 (RF-1)
Length = 359
Score = 167 bits (423), Expect = 1e-41
Identities = 79/133 (59%), Positives = 106/133 (79%), Gaps = 1/133 (0%)
Query: 51 DVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQDERSQHMNKAKALKI 110
+V + +DL++DT+RS G+GGQH N T+SAVRITHIPTG++V+ QDERSQH NKAKA+++
Sbjct: 214 EVFIDEKDLRIDTFRSSGAGGQHVNVTDSAVRITHIPTGVVVSCQDERSQHKNKAKAMRV 273
Query: 111 LCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITYHSIDDVM 170
L A++ + E + S +RS Q+GSGDRSERIRTYNFPQ RVTDHR+G+T +++D VM
Sbjct: 274 LKARIRDAEVQKREQEASAMRSAQVGSGDRSERIRTYNFPQNRVTDHRIGLTLYNLDRVM 333
Query: 171 QGENLDVFIDALL 183
QGE LD+ AL+
Sbjct: 334 QGE-LDMITTALV 345
>RF1_OCEIH (Q8EM60) Peptide chain release factor 1 (RF-1)
Length = 356
Score = 166 bits (421), Expect = 2e-41
Identities = 79/152 (51%), Positives = 114/152 (74%), Gaps = 1/152 (0%)
Query: 36 SSSGSVGLTNEIMKVDVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQ 95
+S+ +V + E +V+V++ ++D++VDT+ S G GGQ NTT SAVR+TH+PTGI+V+IQ
Sbjct: 197 TSTATVAVLPEAEEVEVEVHDKDIRVDTFASSGPGGQSVNTTMSAVRLTHVPTGIVVSIQ 256
Query: 96 DERSQHMNKAKALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVT 155
DE+SQ NK KA+K+L A++Y+ + + + R +GSGDRSERIRTYNFPQ RVT
Sbjct: 257 DEKSQIKNKEKAMKVLRARIYDKFQQEAQAEYDENRKSAVGSGDRSERIRTYNFPQNRVT 316
Query: 156 DHRVGITYHSIDDVMQGENLDVFIDALLLREE 187
DHR+G+T +D +MQG+ LD FIDAL++ E+
Sbjct: 317 DHRIGLTIQKLDQIMQGK-LDEFIDALVMEEQ 347
>RF1_LEPIN (Q8F9S6) Peptide chain release factor 1 (RF-1)
Length = 354
Score = 166 bits (420), Expect = 3e-41
Identities = 80/147 (54%), Positives = 108/147 (73%), Gaps = 1/147 (0%)
Query: 36 SSSGSVGLTNEIMKVDVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQ 95
+S+ +V + E + +VQ+ DL++D YRS G+GGQH NTT+SAVRITHIPTG++VA Q
Sbjct: 194 TSAVTVAVLPEADEEEVQINESDLRIDVYRSSGAGGQHVNTTDSAVRITHIPTGVVVACQ 253
Query: 96 DERSQHMNKAKALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVT 155
DE+SQH NKAKAL+IL A++ E + ++ + IGSGDRSER+RTYNFPQGR T
Sbjct: 254 DEKSQHKNKAKALRILSARILEKQAEDKKQASDAIKKQMIGSGDRSERVRTYNFPQGRCT 313
Query: 156 DHRVGITYHSIDDVMQGENLDVFIDAL 182
DHR+G T H++ +M+G+ LD I AL
Sbjct: 314 DHRIGFTSHNLSAIMEGD-LDELIGAL 339
>RF1_AQUAE (O67032) Peptide chain release factor 1 (RF-1)
Length = 362
Score = 166 bits (419), Expect = 4e-41
Identities = 80/151 (52%), Positives = 113/151 (73%), Gaps = 1/151 (0%)
Query: 36 SSSGSVGLTNEIMKVDVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQ 95
+S+ +V + E+ + D+++K E+LK++T+R+ G+GGQ+ NTT +AVRITHIPTGI+V Q
Sbjct: 201 TSTATVAVLPEVDETDIKIKPEELKIETFRASGAGGQYVNTTETAVRITHIPTGIVVQCQ 260
Query: 96 DERSQHMNKAKALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVT 155
DERSQ NK KALKIL AKL + + +K R EQ+G+G+RSE+IRTYNFPQ RVT
Sbjct: 261 DERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTGERSEKIRTYNFPQNRVT 320
Query: 156 DHRVGITYHSIDDVMQGENLDVFIDALLLRE 186
DHR+ +T + + DV++G+ LD IDAL +E
Sbjct: 321 DHRINLTLYKLQDVLEGK-LDEIIDALRAKE 350
>RF1_STAAW (P66020) Peptide chain release factor 1 (RF-1)
Length = 358
Score = 165 bits (417), Expect = 7e-41
Identities = 79/154 (51%), Positives = 113/154 (73%), Gaps = 2/154 (1%)
Query: 36 SSSGSVGLTNEIMKVDVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQ 95
+S+ +V + E+ V+++++NEDLK+DTYRS G+GGQH NTT+SAVRITH+PTG+I A
Sbjct: 197 TSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITHLPTGVI-ATS 255
Query: 96 DERSQHMNKAKALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVT 155
E+SQ N+ KA+K+L A+LY+M+ + R +G+GDRSERIRTYN+PQ RVT
Sbjct: 256 SEKSQIQNREKAMKVLKARLYDMKVQEEQQKYASQRKSAVGTGDRSERIRTYNYPQSRVT 315
Query: 156 DHRVGITYHSIDDVMQGENLDVFIDALLLREEMD 189
DHR+G+T + +M+G +L+ IDAL L E+ D
Sbjct: 316 DHRIGLTLQKLGQIMEG-HLEEIIDALTLSEQTD 348
>RF1_STAAN (P66019) Peptide chain release factor 1 (RF-1)
Length = 358
Score = 165 bits (417), Expect = 7e-41
Identities = 79/154 (51%), Positives = 113/154 (73%), Gaps = 2/154 (1%)
Query: 36 SSSGSVGLTNEIMKVDVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQ 95
+S+ +V + E+ V+++++NEDLK+DTYRS G+GGQH NTT+SAVRITH+PTG+I A
Sbjct: 197 TSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITHLPTGVI-ATS 255
Query: 96 DERSQHMNKAKALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVT 155
E+SQ N+ KA+K+L A+LY+M+ + R +G+GDRSERIRTYN+PQ RVT
Sbjct: 256 SEKSQIQNREKAMKVLKARLYDMKVQEEQQKYASQRKSAVGTGDRSERIRTYNYPQSRVT 315
Query: 156 DHRVGITYHSIDDVMQGENLDVFIDALLLREEMD 189
DHR+G+T + +M+G +L+ IDAL L E+ D
Sbjct: 316 DHRIGLTLQKLGQIMEG-HLEEIIDALTLSEQTD 348
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.314 0.128 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,638,643
Number of Sequences: 164201
Number of extensions: 750956
Number of successful extensions: 1917
Number of sequences better than 10.0: 159
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1715
Number of HSP's gapped (non-prelim): 167
length of query: 197
length of database: 59,974,054
effective HSP length: 105
effective length of query: 92
effective length of database: 42,732,949
effective search space: 3931431308
effective search space used: 3931431308
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0143c.1