BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0133.5
(1481 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 508 e-143
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 337 1e-91
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 185 7e-46
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 166 3e-40
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 129 8e-29
YMU0_YEAST (Q04670) Transposon Ty1 protein B 116 5e-25
YME4_YEAST (Q04711) Transposon Ty1 protein B 115 9e-25
YJZ9_YEAST (P47100) Transposon Ty1 protein B 114 2e-24
YMT5_YEAST (Q04214) Transposon Ty1 protein B 114 3e-24
YMD9_YEAST (Q03434) Transposon Ty1 protein B 111 1e-23
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 110 3e-23
YJZ7_YEAST (P47098) Transposon Ty1 protein B 109 5e-23
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 108 8e-23
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 92 1e-17
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 45 0.002
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 44 0.003
POL_MMTVB (P03365) Pol polyprotein [Contains: Reverse transcript... 44 0.004
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 43 0.007
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 40 0.062
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 40 0.062
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 508 bits (1307), Expect = e-143
Identities = 346/1069 (32%), Positives = 540/1069 (50%), Gaps = 82/1069 (7%)
Query: 422 DTTWILDTGATDHICNTLSYFSSYKHVAPIPVSLPNGNIESATIKG------SIQLSPSF 475
++ W++DT A+ H F Y VA ++ GN + I G + +
Sbjct: 291 ESEWVVDTAASHHATPVRDLFCRY--VAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTL 348
Query: 476 ILINVLFLPNFEFNLISVHKLVKSLRFRLTFSDDDCLIQDSNACKMIGTARAVRSLYILN 535
+L +V +P+ NLIS L + + F++ + + G AR +LY N
Sbjct: 349 VLKDVRHVPDLRMNLISGIALDRD-GYESYFANQKWRLTKGSLVIAKGVARG--TLYRTN 405
Query: 536 NDSLSPFPSCNSVSTCKSQNLVCEFSPSVQNLWHYRLGHPSFVKGQSI---KDLFPYVQY 592
+ C+ + + SV +LWH R+GH S KG I K L Y +
Sbjct: 406 AE------------ICQGELNAAQDEISV-DLWHKRMGHMS-EKGLQILAKKSLISYAKG 451
Query: 593 TQDHVCEVCPIAKQKRLKFPLSNSTSDCIFQMIHVDIWGPVSVLSLNGFSYFLTIVDDYS 652
T C+ C KQ R+ F S+ I +++ D+ GP+ + S+ G YF+T +DD S
Sbjct: 452 TTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDAS 511
Query: 653 RYTWVYLLKSKDEVQTLVKDFCAFVTNQFGVSVKIVRSDNGKEFVLSQFY---AEKGIIH 709
R WVY+LK+KD+V + + F A V + G +K +RSDNG E+ +F + GI H
Sbjct: 512 RKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRH 571
Query: 710 HTSCVETPQQNSIVERKHQHILNVARALLFQAHLPKIFWAHAIIHSIFLINRLPTPILDN 769
+ TPQ N + ER ++ I+ R++L A LPK FW A+ + +LINR P+ L
Sbjct: 572 EKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAF 631
Query: 770 QCPFQLLHKQLPDITFLKVFGSLCFASTLASHRTKFDHRAKRCVFLGFKSGTKGYLVYDL 829
+ P ++ + + LKVFG FA RTK D ++ C+F+G+ GY ++D
Sbjct: 632 EIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDP 691
Query: 830 NTRDISISRNVIFHENIFPYKLHRDDHECESSTFPQIPCLPSEPFDYEYPIPPDNPVQIQ 889
+ + SR+V+F E+ + + ++ P +PS +NP +
Sbjct: 692 VKKKVIRSRDVVFRESEVRTAADMSE-KVKNGIIPNFVTIPS---------TSNNPTSAE 741
Query: 890 PLSSGPSQNSEQP--IVHRVSQRPR-----KQPTYLQDYHCTLAATSTVVPANSSSKGTS 942
+ S+ EQP ++ + Q + PT ++ H L + + T
Sbjct: 742 STTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHPTQGEEQHQPLRRSERPRVESRRYPSTE 801
Query: 943 HPLSQVISYHKLDPSYHAFIMNITTTVEPTRYSEAVKH---ECWRVAMN*EIEALERNNT 999
+ L I+ EP E + H AM E+E+L++N T
Sbjct: 802 YVL-------------------ISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGT 842
Query: 1000 WLLVDKPPDKTPIGCKWVYRIKYKQDGTIDRYKARLVVKGYTQIEGIDFMDTFSPVAKMT 1059
+ LV+ P K P+ CKWV+++K D + RYKARLVVKG+ Q +GIDF + FSPV KMT
Sbjct: 843 YKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMT 902
Query: 1060 TLRVLLSLVSTKNWFLHQLDVDNAFLHAKLDEEIYMSLPQGMN-SDKPNQVCLLQKSLYG 1118
++R +LSL ++ + + QLDV AFLH L+EEIYM P+G + K + VC L KSLYG
Sbjct: 903 SIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYG 962
Query: 1119 LKQASRQWFSTLCQALQGLGFTQSFADHTLYVKKSATGSFTALLLYVDDVLLAGNDMDEI 1178
LKQA RQW+ ++ + ++++D +Y K+ + +F LLLYVDD+L+ G D I
Sbjct: 963 LKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLI 1022
Query: 1179 KLVKHSLHQKFRIKDLGEAKFFLGLAIA--RSQKGIILNQRKYALELLSDSGLLGGKSAT 1236
+K L + F +KDLG A+ LG+ I R+ + + L+Q KY +L + K +
Sbjct: 1023 AKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVS 1082
Query: 1237 TPMDCSQKLSAS-SGTPLSDISS-----YRRLIGRLLY-LTTTRPDIAYVVNQLSQFLSA 1289
TP+ KLS T + + + Y +G L+Y + TRPDIA+ V +S+FL
Sbjct: 1083 TPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLEN 1142
Query: 1290 PTDMHEAAAHRVLRYIKGSPGCGLFYPAASSTVLTAFSDSDGAGCVDTRKSITGYCMFLG 1349
P H A +LRY++G+ G L + S +L ++D+D AG +D RKS TGY
Sbjct: 1143 PGKEHWEAVKWILRYLRGTTGDCLCF-GGSDPILKGYTDADMAGDIDNRKSSTGYLFTFS 1201
Query: 1350 SSLVSWRSKKQTTTSRSSCEAEYRAMAATVCEVQWLIYLLQDLQVSQTSPVSMFCDNQSA 1409
+SW+SK Q + S+ EAEY A T E+ WL LQ+L + Q V ++CD+QSA
Sbjct: 1202 GGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYV-VYCDSQSA 1260
Query: 1410 MHIAHNPSYHERTKHIELDCHIVREKITQGLVHLLPVTSSLQLADIFTK 1458
+ ++ N YH RTKHI++ H +RE + + +L ++++ AD+ TK
Sbjct: 1261 IDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTK 1309
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 337 bits (864), Expect = 1e-91
Identities = 204/537 (37%), Positives = 300/537 (54%), Gaps = 14/537 (2%)
Query: 949 ISYHKLDPSYHAFIMNITTTVE--PTRYSEAVKHE---CWRVAMN*EIEALERNNTWLLV 1003
ISY++ D S + ++N T P + E + W A+N E+ A + NNTW +
Sbjct: 867 ISYNEEDNSLNKVVLNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTIT 926
Query: 1004 DKPPDKTPIGCKWVYRIKYKQDGTIDRYKARLVVKGYTQIEGIDFMDTFSPVAKMTTLRV 1063
+P +K + +WV+ +KY + G RYKARLV +G+TQ ID+ +TF+PVA++++ R
Sbjct: 927 KRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRF 986
Query: 1064 LLSLVSTKNWFLHQLDVDNAFLHAKLDEEIYMSLPQGMNSDKPNQVCLLQKSLYGLKQAS 1123
+LSLV N +HQ+DV AFL+ L EEIYM LPQG++ + N VC L K++YGLKQA+
Sbjct: 987 ILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNSDN-VCKLNKAIYGLKQAA 1045
Query: 1124 RQWFSTLCQALQGLGFTQSFADHTLYV-KKSATGSFTALLLYVDDVLLAGNDMDEIKLVK 1182
R WF QAL+ F S D +Y+ K +LLYVDDV++A DM + K
Sbjct: 1046 RCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFK 1105
Query: 1183 HSLHQKFRIKDLGEAKFFLGLAIARSQKGIILNQRKYALELLSDSGLLGGKSATTPMDCS 1242
L +KFR+ DL E K F+G+ I + I L+Q Y ++LS + + +TP+
Sbjct: 1106 RYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPL--P 1163
Query: 1243 QKLSASSGTPLSDISS-YRRLIGRLLY-LTTTRPDIAYVVNQLSQFLSAPTDMHEAAAHR 1300
K++ D ++ R LIG L+Y + TRPD+ VN LS++ S R
Sbjct: 1164 SKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKR 1223
Query: 1301 VLRYIKGSPGCGLFYP--AASSTVLTAFSDSDGAGCVDTRKSITGYCM-FLGSSLVSWRS 1357
VLRY+KG+ L + A + + DSD AG RKS TGY +L+ W +
Sbjct: 1224 VLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNT 1283
Query: 1358 KKQTTTSRSSCEAEYRAMAATVCEVQWLIYLLQDLQVSQTSPVSMFCDNQSAMHIAHNPS 1417
K+Q + + SS EAEY A+ V E WL +LL + + +P+ ++ DNQ + IA+NPS
Sbjct: 1284 KRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPS 1343
Query: 1418 YHERTKHIELDCHIVREKITQGLVHLLPVTSSLQLADIFTKPLSPAPFRHIFSKLRL 1474
H+R KHI++ H RE++ ++ L + + QLADIFTKPL A F + KL L
Sbjct: 1344 CHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400
Score = 169 bits (428), Expect = 5e-41
Identities = 147/563 (26%), Positives = 261/563 (46%), Gaps = 62/563 (11%)
Query: 329 FKNPKYANRSANLVQTTKEDQESTSQGNTQEQEAARFGFTADQYHHLLLLLPPSEQKNST 388
+KN + NR V K+ + S+ + R G H +L ++N
Sbjct: 206 YKNNLFKNR----VTKPKKIFKGNSKYKVKCHHCGREGHIKKDCFHYKRILNNKNKENEK 261
Query: 389 SQHTASINSCVQMLPGKNGNSISQISTKNGNPLDTTWILDTGATDHICNTLS-YFSSYKH 447
TA+ + M+ N S+ + ++LD+GA+DH+ N S Y S +
Sbjct: 262 QVQTATSHGIAFMVKEVNNTSVMD---------NCGFVLDSGASDHLINDESLYTDSVEV 312
Query: 448 VAPIPVSLPN-GNIESATIKGSIQL--SPSFILINVLFLPNFEFNLISVHKLVKSLRFRL 504
V P+ +++ G AT +G ++L L +VLF NL+SV +L ++ +
Sbjct: 313 VPPLKIAVAKQGEFIYATKRGIVRLRNDHEITLEDVLFCKEAAGNLMSVKRLQEA---GM 369
Query: 505 TFSDDDCLIQDSNACKMIGTARAVRSLYILNNDSLSPFPSCNSVSTCKSQNLVCEFSPSV 564
+ D + S M+ V++ +LNN + F + S++ N
Sbjct: 370 SIEFDKSGVTISKNGLMV-----VKNSGMLNNVPVINFQAY-SINAKHKNNF-------- 415
Query: 565 QNLWHYRLGHPSFVKGQSIK--DLFPYVQYTQD-----HVCEVCPIAKQKRLKFPLSNST 617
LWH R GH S K IK ++F + +CE C KQ RL F
Sbjct: 416 -RLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKDK 474
Query: 618 SDC---IFQMIHVDIWGPVSVLSLNGFSYFLTIVDDYSRYTWVYLLKSKDEVQTLVKDFC 674
+ +F ++H D+ GP++ ++L+ +YF+ VD ++ Y YL+K K +V ++ +DF
Sbjct: 475 THIKRPLF-VVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFV 533
Query: 675 AFVTNQFGVSVKIVRSDNGKEFV---LSQFYAEKGIIHHTSCVETPQQNSIVERKHQHIL 731
A F + V + DNG+E++ + QF +KGI +H + TPQ N + ER + I
Sbjct: 534 AKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTIT 593
Query: 732 NVARALLFQAHLPKIFWAHAIIHSIFLINRLPTPIL--DNQCPFQLLHKQLPDITFLKVF 789
AR ++ A L K FW A++ + +LINR+P+ L ++ P+++ H + P + L+VF
Sbjct: 594 EKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVF 653
Query: 790 GSLCFASTLASHRTKFDHRAKRCVFLGFKSGTKGYLVYDLNTRDISISRNVIFHEN---- 845
G+ + + + + KFD ++ + +F+G++ G+ ++D ++R+V+ E
Sbjct: 654 GATVYVH-IKNKQGKFDDKSFKSIFVGYE--PNGFKLWDAVNEKFIVARDVVVDETNMVN 710
Query: 846 ----IFPYKLHRDDHECESSTFP 864
F +D E E+ FP
Sbjct: 711 SRAVKFETVFLKDSKESENKNFP 733
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 185 bits (470), Expect = 7e-46
Identities = 98/224 (43%), Positives = 136/224 (59%), Gaps = 1/224 (0%)
Query: 1161 LLLYVDDVLLAGNDMDEIKLVKHSLHQKFRIKDLGEAKFFLGLAIARSQKGIILNQRKYA 1220
LLLYVDD+LL G+ + ++ L F +KDLG +FLG+ I G+ L+Q KYA
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62
Query: 1221 LELLSDSGLLGGKSATTPMDCSQKLSASSGTPLSDISSYRRLIGRLLYLTTTRPDIAYVV 1280
++L+++G+L K +TP+ S S+ D S +R ++G L YLT TRPDI+Y V
Sbjct: 63 EQILNNAGMLDCKPMSTPLPLKLNSSVSTAK-YPDPSDFRSIVGALQYLTLTRPDISYAV 121
Query: 1281 NQLSQFLSAPTDMHEAAAHRVLRYIKGSPGCGLFYPAASSTVLTAFSDSDGAGCVDTRKS 1340
N + Q + PT RVLRY+KG+ GL+ S + AF DSD AGC TR+S
Sbjct: 122 NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRS 181
Query: 1341 ITGYCMFLGSSLVSWRSKKQTTTSRSSCEAEYRAMAATVCEVQW 1384
TG+C FLG +++SW +K+Q T SRSS E EYRA+A T E+ W
Sbjct: 182 TTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 166 bits (421), Expect = 3e-40
Identities = 110/309 (35%), Positives = 165/309 (52%), Gaps = 5/309 (1%)
Query: 1078 LDVDNAFLHAKLDEEIYMSLPQG-MNSDKPNQVCLLQKSLYGLKQASRQWFSTLCQALQG 1136
+DVD AFL++ +DE IY+ P G +N P+ V L +YGLKQA W + L+
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 1137 LGFTQSFADHTLYVKKSATGSFTALLLYVDDVLLAGNDMDEIKLVKHSLHQKFRIKDLGE 1196
+GF + +H LY + ++ G + +YVDD+L+A VK L + + +KDLG+
Sbjct: 61 IGFCRHEGEHGLYFRSTSDGPIY-IGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGK 119
Query: 1197 AKFFLGLAIARSQKG-IILNQRKYALELLSDSGLLGGKSATTPMDCSQKLSASSGTPLSD 1255
FLGL I +S G I L+ + Y + S+S + K TP+ S+ L ++ L D
Sbjct: 120 VDKFLGLNIHQSTNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKD 179
Query: 1256 ISSYRRLIGRLLYLTTT-RPDIAYVVNQLSQFLSAPTDMHEAAAHRVLRYIKGSPGCGLF 1314
I+ Y+ ++G+LL+ T RPDI+Y V+ LS+FL P +H +A RVLRY+ + L
Sbjct: 180 ITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLK 239
Query: 1315 YPAASSTVLTAFSDSDGAGCVDTRKSITGYCMFLGSSLVSWRSKK-QTTTSRSSCEAEYR 1373
Y + S LT + D+ D S GY L + V+W SKK + S EAEY
Sbjct: 240 YRSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYI 299
Query: 1374 AMAATVCEV 1382
+ TV E+
Sbjct: 300 TASETVMEI 308
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 129 bits (323), Expect = 8e-29
Identities = 115/467 (24%), Positives = 213/467 (44%), Gaps = 38/467 (8%)
Query: 1031 YKARLVVKGYTQIEGIDFMDTFSPVAKMTT----LRVLLSLVSTKNWFLHQLDVDNAFLH 1086
YKAR+V +G TQ DT+S + + +++ L + + +N F+ LD+++AFL+
Sbjct: 1337 YKARIVCRGDTQSP-----DTYSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLY 1391
Query: 1087 AKLDEEIYMSLPQGMNSDKPNQVCLLQKSLYGLKQASRQWFSTLCQALQGLGFTQSFADH 1146
AKL+EEIY+ P V L K+LYGLKQ+ ++W L Q L G+G +
Sbjct: 1392 AKLEEEIYIPHPHDRRC-----VVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTP 1446
Query: 1147 TLYVKKSATGSFTALLLYVDDVLLAGNDMDEIKLVKHSLHQKFRIKDLGEA------KFF 1200
LY + + +YVDD ++A ++ + + L F +K G
Sbjct: 1447 GLYQTEDKN---LMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDI 1503
Query: 1201 LGLAIARSQK-GII-------LNQ--RKYALELLSDSGLLGGKSATTPMDCSQK-LSASS 1249
LG+ + +++ G I +N+ +KY EL +T +D + L S
Sbjct: 1504 LGMDLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQMSE 1563
Query: 1250 GTPLSDISSYRRLIGRLLYLT-TTRPDIAYVVNQLSQFLSAPTDMHEAAAHRVLRYIKGS 1308
+ ++L+G L Y+ R DI + V ++++ ++ P + +++++Y+
Sbjct: 1564 EEFRQGVLKLQQLLGELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKIIQYLVRY 1623
Query: 1309 PGCGLFY--PAASSTVLTAFSDSDGAGCVDTRKSITGYCMFLGSSLVSWRSKKQTTTSRS 1366
G+ Y + A +D+ D + I G ++ G ++ + S K T S
Sbjct: 1624 KDIGIHYDRDCNKDKKVIAITDASVGSEYDAQSRI-GVILWYGMNIFNVYSNKSTNRCVS 1682
Query: 1367 SCEAEYRAMAATVCEVQWLIYLLQDLQVSQTSPVSMFCDNQSAMHIAHNPSYHERTKHIE 1426
S EAE A+ + + L L++L + + M D++ A+ + + K
Sbjct: 1683 STEAELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKFTW 1742
Query: 1427 LDCHIVREKITQGLVHLLPVTSSLQLADIFTKPLSPAPFRHIFSKLR 1473
+ I++EKI + + LL +T +AD+ TKP+S + F+ L+
Sbjct: 1743 IKTEIIKEKIKEKSIKLLKITGKGNIADLLTKPVSASDFKRFIQVLK 1789
Score = 68.2 bits (165), Expect = 2e-10
Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 15/209 (7%)
Query: 569 HYRLGHPSF------VKGQSIKDLFPYVQYTQDHVCEVCPIAKQ-KRLKFPLS---NSTS 618
H R+GH +K ++ ++ + C+ C I+K KR + S +ST
Sbjct: 562 HKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTD 621
Query: 619 DCIFQMIHVDIWGPVSVLSLNGFSYFLTIVDDYSRY--TWVYLLKSKDEVQTLVKDFCAF 676
+DI+GPVS + + Y L +VD+ +RY T + K+ + + V+ +
Sbjct: 622 HEPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQY 681
Query: 677 VTNQFGVSVKIVRSDNGKEFV---LSQFYAEKGIIHHTSCVETPQQNSIVERKHQHILNV 733
V QF V+ + SD G EF + +++ KGI H + + N ER + I+
Sbjct: 682 VETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITD 741
Query: 734 ARALLFQAHLPKIFWAHAIIHSIFLINRL 762
A LL Q++L FW +A+ + + N L
Sbjct: 742 ATTLLRQSNLRVKFWEYAVTSATNIRNYL 770
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 116 bits (290), Expect = 5e-25
Identities = 155/652 (23%), Positives = 277/652 (41%), Gaps = 77/652 (11%)
Query: 864 PQIPCLPSEPFDYEYP---IPPDNPVQIQPLSSGPSQNSEQPIVHRVSQRPRKQPTYLQD 920
P +P P P ++ P +PP N Q G ++ ++ + T ++
Sbjct: 707 PDLP--PESPTEFPDPFKELPPINSRQTNSSLGGIGDSNAYTTINSKKRSLEDNETEIKV 764
Query: 921 YHCTLAATSTVVPANSSSKGTSHPLSQVISYHKLDPSYHAFIMNITTTVEPTRYSEAVKH 980
T + SK H ++ V + + P I TT+ RY EA+ +
Sbjct: 765 SRDTWNTKNMRSLEPPRSKKRIHLIAAVKAVKSIKP--------IRTTL---RYDEAITY 813
Query: 981 -------ECWRVAMN*EIEALERNNTWLLVDKPPDKTPIGCKWVYRIKY----KQDGTID 1029
E + A + E+ L + TW D+ D+ I K V + K+DGT
Sbjct: 814 NKDIKEKEKYIQAYHKEVNQLLKMKTWD-TDRYYDRKEIDPKRVINSMFIFNRKRDGT-- 870
Query: 1030 RYKARLVVKGYTQIEGIDFMDTFSPVAKMTT-----LRVLLSLVSTKNWFLHQLDVDNAF 1084
+KAR V +G I DT+ P + T L LSL N+++ QLD+ +A+
Sbjct: 871 -HKARFVARG-----DIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAY 924
Query: 1085 LHAKLDEEIYMSLPQ--GMNSDKPNQVCLLQKSLYGLKQASRQWFSTLCQALQGLGFTQS 1142
L+A + EE+Y+ P GMN +++ L+KSLYGLKQ+ W+ T+ L +
Sbjct: 925 LYADIKEELYIRPPPHLGMN----DKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEE 980
Query: 1143 FADHTLYVKKSATGSFTALLLYVDDVLLAGNDMDEIKLVKHSLHQKF--RIKDLGEAKF- 1199
+ K S + L+VDD++L D++ K + +L +++ +I +LGE+
Sbjct: 981 VRGWSCVFKNSQV----TICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNE 1036
Query: 1200 ----FLGLAIARSQKGIIL-----NQRKYALELLSDSGLLGGKSATTPMDCS-----QKL 1245
LGL I + Q+G + N + L+ G+ + P Q+L
Sbjct: 1037 IQYDILGLEI-KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQEL 1095
Query: 1246 SASSGTPLSDISSYRRLIGRLLYLTTT-RPDIAYVVNQLSQFLSAPTDMHEAAAHRVLRY 1304
+ ++LIG Y+ R D+ Y +N L+Q + P+ + ++++
Sbjct: 1096 ELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQF 1155
Query: 1305 IKGSPGCGLFY----PAASSTVLTAFSDSDGAGCVDTRKSITGYCMFLGSSLVSWRSKKQ 1360
I + L + P + L SD+ G KS G L ++ +S K
Sbjct: 1156 IWNTRDKQLIWHKSKPVKPTNKLVVISDAS-YGNQPYYKSQIGNIYLLNGKVIGGKSTKA 1214
Query: 1361 TTTSRSSCEAEYRAMAATVCEVQWLIYLLQDLQVSQTSPVSMFCDNQSAMH-IAHNPSYH 1419
+ T S+ EAE A++ +V + L +L+Q+L + + D++S + I N
Sbjct: 1215 SLTCTSTTEAEIHAISESVPLLNNLSHLVQELNKKPITK-GLLTDSKSTISIIISNNEEK 1273
Query: 1420 ERTKHIELDCHIVREKITQGLVHLLPVTSSLQLADIFTKPLSPAPFRHIFSK 1471
R + +R++++ +H+ + + +AD+ TKPL F+ + +K
Sbjct: 1274 FRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1325
Score = 81.6 bits (200), Expect = 1e-14
Identities = 55/184 (29%), Positives = 88/184 (46%), Gaps = 17/184 (9%)
Query: 595 DHVCEVCPIAKQ--------KRLKFPLSNSTSDCIFQMIHVDIWGPVSVLSLNGFSYFLT 646
D+ C C I K RLK+ S FQ +H DI+GPV L + SYF++
Sbjct: 207 DYQCPDCLIGKSTKHRHIKGSRLKYQNSYEP----FQYLHTDIFGPVHNLPKSAPSYFIS 262
Query: 647 IVDDYSRYTWVYLL--KSKDEVQTLVKDFCAFVTNQFGVSVKIVRSDNGKEF---VLSQF 701
D+ +++ WVY L + +D + + AF+ NQF SV +++ D G E+ L +F
Sbjct: 263 FTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKF 322
Query: 702 YAEKGIIHHTSCVETPQQNSIVERKHQHILNVARALLFQAHLPKIFWAHAIIHSIFLINR 761
+ GI + + + + ER ++ +L+ R L + LP W AI S + N
Sbjct: 323 LEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNS 382
Query: 762 LPTP 765
L +P
Sbjct: 383 LASP 386
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 115 bits (288), Expect = 9e-25
Identities = 156/658 (23%), Positives = 278/658 (41%), Gaps = 89/658 (13%)
Query: 864 PQIPCLPSEPFDYEYP---IPPDNPVQIQPLSSGPSQNSEQPIVHRVSQRPRKQPTYLQD 920
P +P P P ++ P +PP N Q G ++ ++ + T ++
Sbjct: 707 PDLP--PESPTEFPDPFKELPPINSHQTNSSLGGIGDSNAYTTINSKKRSLEDNETEIKV 764
Query: 921 YHCTLAATSTVVPANSSSKGTSHPLSQVISYHKLDPSYHAFIMNITTTVEPTRYSEAVKH 980
T + SK H ++ V + + P I TT+ RY EA+ +
Sbjct: 765 SRDTWNTKNMRSLEPPRSKKRIHLIAAVKAVKSIKP--------IRTTL---RYDEAITY 813
Query: 981 -------ECWRVAMN*EIEALERNNTWLLVDKPPDKTPIGCKWVYRIKY----KQDGTID 1029
E + A + E+ L + NTW DK D+ I K V + K+DGT
Sbjct: 814 NKDIKEKEKYIEAYHKEVNQLLKMNTWD-TDKYYDRKEIDPKRVINSMFIFNRKRDGT-- 870
Query: 1030 RYKARLVVKGYTQIEGIDFMDTFSPVAKMTT-----LRVLLSLVSTKNWFLHQLDVDNAF 1084
+KAR V +G I DT+ + T L LSL N+++ QLD+ +A+
Sbjct: 871 -HKARFVARG-----DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAY 924
Query: 1085 LHAKLDEEIYMSLPQ--GMNSDKPNQVCLLQKSLYGLKQASRQWFSTLCQALQGLGFTQS 1142
L+A + EE+Y+ P GMN +++ L+KSLYGLKQ+ W+ T+ L +
Sbjct: 925 LYADIKEELYIRPPPHLGMN----DKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEE 980
Query: 1143 FADHTLYVKKSATGSFTALLLYVDDVLLAGNDMDEIKLVKHSLHQKF--RIKDLGEAK-- 1198
+ K S + L+VDD++L D++ K + +L +++ +I +LGE+
Sbjct: 981 VRGWSCVFKNSQ----VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNE 1036
Query: 1199 ---FFLGLAIARSQKGIILNQRKYALELLSDSGLLGGKSATTPMDCSQKLSASSGTP--- 1252
LGL I + Q+G KY + +S P++ + ++ G P
Sbjct: 1037 IQYDILGLEI-KYQRG------KYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLY 1089
Query: 1253 -------------LSDISSYRRLIGRLLYL-TTTRPDIAYVVNQLSQFLSAPTDMHEAAA 1298
+ ++LIG Y+ R D+ Y +N L+Q + P+
Sbjct: 1090 IDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMT 1149
Query: 1299 HRVLRYIKGSPGCGLFY----PAASSTVLTAFSDSDGAGCVDTRKSITGYCMFLGSSLVS 1354
+ +++++ + L + P L A SD+ G KS G L ++
Sbjct: 1150 YELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDA-SYGNQPYYKSQIGNIYLLNGKVIG 1208
Query: 1355 WRSKKQTTTSRSSCEAEYRAMAATVCEVQWLIYLLQDLQVSQTSPVSMFCDNQSAMH-IA 1413
+S K + T S+ EAE A++ +V + L +L+Q+L + + D++S + I
Sbjct: 1209 GKSTKASLTCTSTTEAEIHAISESVPLLNNLSHLVQELNKKPITK-GLLTDSKSTISIII 1267
Query: 1414 HNPSYHERTKHIELDCHIVREKITQGLVHLLPVTSSLQLADIFTKPLSPAPFRHIFSK 1471
N R + +R++++ +H+ + + +AD+ TKPL F+ + +K
Sbjct: 1268 SNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1325
Score = 81.6 bits (200), Expect = 1e-14
Identities = 55/184 (29%), Positives = 88/184 (46%), Gaps = 17/184 (9%)
Query: 595 DHVCEVCPIAKQ--------KRLKFPLSNSTSDCIFQMIHVDIWGPVSVLSLNGFSYFLT 646
D+ C C I K RLK+ S FQ +H DI+GPV L + SYF++
Sbjct: 207 DYQCPDCLIGKSTKHRHIKGSRLKYQNSYEP----FQYLHTDIFGPVHNLPKSAPSYFIS 262
Query: 647 IVDDYSRYTWVYLL--KSKDEVQTLVKDFCAFVTNQFGVSVKIVRSDNGKEF---VLSQF 701
D+ +++ WVY L + +D + + AF+ NQF SV +++ D G E+ L +F
Sbjct: 263 FTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKF 322
Query: 702 YAEKGIIHHTSCVETPQQNSIVERKHQHILNVARALLFQAHLPKIFWAHAIIHSIFLINR 761
+ GI + + + + ER ++ +L+ R L + LP W AI S + N
Sbjct: 323 LEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNS 382
Query: 762 LPTP 765
L +P
Sbjct: 383 LASP 386
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 114 bits (285), Expect = 2e-24
Identities = 155/653 (23%), Positives = 276/653 (41%), Gaps = 79/653 (12%)
Query: 864 PQIPCLPSEPFDYEYP---IPPDNPVQIQPLSSGPSQNSEQPIVHRVSQRPRKQPTYLQD 920
P +P P P ++ P +PP N Q G ++ ++ + T ++
Sbjct: 1134 PDLP--PESPTEFPDPFKELPPINSRQTNSSLGGIGDSNAYTTINSKKRSLEDNETEIKV 1191
Query: 921 YHCTLAATSTVVPANSSSKGTSHPLSQVISYHKLDPSYHAFIMNITTTVEPTRYSEAVKH 980
T + SK H ++ V + + P I TT+ RY EA+ +
Sbjct: 1192 SRDTWNTKNMRSLEPPRSKKRIHLIAAVKAVKSIKP--------IRTTL---RYDEAITY 1240
Query: 981 -------ECWRVAMN*EIEALERNNTWLLVDKPPDKTPIGCKWVYRIKY----KQDGTID 1029
E + A + E+ L + TW D+ D+ I K V + K+DGT
Sbjct: 1241 NKDIKEKEKYIEAYHKEVNQLLKMKTWD-TDEYYDRKEIDPKRVINSMFIFNKKRDGT-- 1297
Query: 1030 RYKARLVVKGYTQIEGIDFMDTFSPVAKMTT-----LRVLLSLVSTKNWFLHQLDVDNAF 1084
+KAR V +G I DT+ + T L LSL N+++ QLD+ +A+
Sbjct: 1298 -HKARFVARG-----DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAY 1351
Query: 1085 LHAKLDEEIYMSLPQ--GMNSDKPNQVCLLQKSLYGLKQASRQWFSTLCQAL-QGLGFTQ 1141
L+A + EE+Y+ P GMN +++ L+KSLYGLKQ+ W+ T+ L Q G +
Sbjct: 1352 LYADIKEELYIRPPPHLGMN----DKLIRLKKSLYGLKQSGANWYETIKSYLIQQCGMEE 1407
Query: 1142 SFADHTLYVKKSATGSFTALLLYVDDVLLAGNDMDEIKLVKHSLHQKF--RIKDLGEAKF 1199
++ T + L+VDD++L +++ K + L ++ +I +LGE+
Sbjct: 1408 VRGWSCVFKNSQVT-----ICLFVDDMVLFSKNLNSNKRIIEKLKMQYDTKIINLGESDE 1462
Query: 1200 -----FLGLAIARSQKGIIL-----NQRKYALELLSDSGLLGGKSATTPMDCS-----QK 1244
LGL I + Q+G + N + L+ G+ + P Q+
Sbjct: 1463 EIQYDILGLEI-KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQE 1521
Query: 1245 LSASSGTPLSDISSYRRLIGRLLYLTTT-RPDIAYVVNQLSQFLSAPTDMHEAAAHRVLR 1303
L + ++LIG Y+ R D+ Y +N L+Q + P+ + +++
Sbjct: 1522 LELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQ 1581
Query: 1304 YIKGSPGCGLFY----PAASSTVLTAFSDSDGAGCVDTRKSITGYCMFLGSSLVSWRSKK 1359
+I + L + P + L SD+ G KS G L ++ +S K
Sbjct: 1582 FIWNTRDKQLIWHKSKPVKPTNKLVVISDAS-YGNQPYYKSQIGNIYLLNGKVIGGKSTK 1640
Query: 1360 QTTTSRSSCEAEYRAMAATVCEVQWLIYLLQDLQVSQTSPVSMFCDNQSAMH-IAHNPSY 1418
+ T S+ EAE A++ +V + L YL+Q+L + + D++S + I N
Sbjct: 1641 ASLTCTSTTEAEIHAISESVPLLNNLSYLIQELDKKPITK-GLLTDSKSTISIIISNNEE 1699
Query: 1419 HERTKHIELDCHIVREKITQGLVHLLPVTSSLQLADIFTKPLSPAPFRHIFSK 1471
R + +R++++ +H+ + + +AD+ TKPL F+ + +K
Sbjct: 1700 KFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1752
Score = 81.6 bits (200), Expect = 1e-14
Identities = 55/184 (29%), Positives = 88/184 (46%), Gaps = 17/184 (9%)
Query: 595 DHVCEVCPIAKQ--------KRLKFPLSNSTSDCIFQMIHVDIWGPVSVLSLNGFSYFLT 646
D+ C C I K RLK+ S FQ +H DI+GPV L + SYF++
Sbjct: 634 DYQCPDCLIGKSTKHRHIKGSRLKYQNSYEP----FQYLHTDIFGPVHNLPKSAPSYFIS 689
Query: 647 IVDDYSRYTWVYLL--KSKDEVQTLVKDFCAFVTNQFGVSVKIVRSDNGKEF---VLSQF 701
D+ +++ WVY L + +D + + AF+ NQF SV +++ D G E+ L +F
Sbjct: 690 FTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKF 749
Query: 702 YAEKGIIHHTSCVETPQQNSIVERKHQHILNVARALLFQAHLPKIFWAHAIIHSIFLINR 761
+ GI + + + + ER ++ +L+ R L + LP W AI S + N
Sbjct: 750 LEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNS 809
Query: 762 LPTP 765
L +P
Sbjct: 810 LASP 813
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 114 bits (284), Expect = 3e-24
Identities = 156/652 (23%), Positives = 275/652 (41%), Gaps = 78/652 (11%)
Query: 866 IPCLPSEP----FDYEYPIPPDNPVQIQPLSSGPSQNSEQPIVHRVSQRPRKQPTYLQDY 921
+P LP EP D +PP N Q G ++ ++ + T ++
Sbjct: 706 LPDLPPEPPTELSDSFKELPPINSRQTNSSLGGIGDSNAYTTINSKKRSLEDNETEIKVS 765
Query: 922 HCTLAATSTVVPANSSSKGTSHPLSQVISYHKLDPSYHAFIMNITTTVEPTRYSEAVKH- 980
T + SK H ++ V + + P I TT+ RY EA+ +
Sbjct: 766 RDTWNTKNMRSLEPPRSKKRIHLIAAVKAVKSIKP--------IRTTL---RYDEAITYN 814
Query: 981 ------ECWRVAMN*EIEALERNNTWLLVDKPPDKTPIGCKWVYRIKY----KQDGTIDR 1030
E + A + E+ L + TW DK D+ I K V + K+DGT
Sbjct: 815 KDIKEKEKYIEAYHKEVNQLLKMKTWD-TDKYYDRKEIDPKRVINSMFIFNRKRDGT--- 870
Query: 1031 YKARLVVKGYTQIEGIDFMDTFSPVAKMTT-----LRVLLSLVSTKNWFLHQLDVDNAFL 1085
+KAR V +G I DT+ + T L LSL N+++ QLD+ +A+L
Sbjct: 871 HKARFVARG-----DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYL 925
Query: 1086 HAKLDEEIYMSLPQ--GMNSDKPNQVCLLQKSLYGLKQASRQWFSTLCQAL-QGLGFTQS 1142
+A + EE+Y+ P GMN +++ L+KSLYGLKQ+ W+ T+ L + G +
Sbjct: 926 YADIKEELYIRPPPHLGMN----DKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEV 981
Query: 1143 FADHTLYVKKSATGSFTALLLYVDDVLLAGNDMDEIKLVKHSLHQKF--RIKDLGEAKF- 1199
++ T + L+VDD++L +++ K + L ++ +I +LGE+
Sbjct: 982 RGWSCVFENSQVT-----ICLFVDDMVLFSKNLNSNKRIIDKLKMQYDTKIINLGESDEE 1036
Query: 1200 ----FLGLAIARSQKGIIL-----NQRKYALELLSDSGLLGGKSATTPMDCS-----QKL 1245
LGL I + Q+G + N + L+ G+ + P Q+L
Sbjct: 1037 IQYDILGLEI-KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQEL 1095
Query: 1246 SASSGTPLSDISSYRRLIGRLLYLTTT-RPDIAYVVNQLSQFLSAPTDMHEAAAHRVLRY 1304
+ ++LIG Y+ R D+ Y +N L+Q + P+ + ++++
Sbjct: 1096 ELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQF 1155
Query: 1305 IKGSPGCGLFY----PAASSTVLTAFSDSDGAGCVDTRKSITGYCMFLGSSLVSWRSKKQ 1360
I + L + P + L SD+ G KS G L ++ +S K
Sbjct: 1156 IWNTRDKQLIWHKSKPVKPTNKLVVISDAS-YGNQPYYKSQIGNIYLLNGKVIGGKSTKA 1214
Query: 1361 TTTSRSSCEAEYRAMAATVCEVQWLIYLLQDLQVSQTSPVSMFCDNQSAMH-IAHNPSYH 1419
+ T S+ EAE A++ +V + L YL+Q+L + + D++S + I N
Sbjct: 1215 SLTCTSTTEAEIHAISESVPLLNNLSYLIQELDKKPITK-GLLTDSKSTISIIISNNEEK 1273
Query: 1420 ERTKHIELDCHIVREKITQGLVHLLPVTSSLQLADIFTKPLSPAPFRHIFSK 1471
R + +R++++ +H+ + + +AD+ TKPL F+ + +K
Sbjct: 1274 FRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1325
Score = 81.6 bits (200), Expect = 1e-14
Identities = 55/184 (29%), Positives = 88/184 (46%), Gaps = 17/184 (9%)
Query: 595 DHVCEVCPIAKQ--------KRLKFPLSNSTSDCIFQMIHVDIWGPVSVLSLNGFSYFLT 646
D+ C C I K RLK+ S FQ +H DI+GPV L + SYF++
Sbjct: 207 DYQCPDCLIGKSTKHRHIKGSRLKYQNSYEP----FQYLHTDIFGPVHNLPKSAPSYFIS 262
Query: 647 IVDDYSRYTWVYLL--KSKDEVQTLVKDFCAFVTNQFGVSVKIVRSDNGKEF---VLSQF 701
D+ +++ WVY L + +D + + AF+ NQF SV +++ D G E+ L +F
Sbjct: 263 FTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKF 322
Query: 702 YAEKGIIHHTSCVETPQQNSIVERKHQHILNVARALLFQAHLPKIFWAHAIIHSIFLINR 761
+ GI + + + + ER ++ +L+ R L + LP W AI S + N
Sbjct: 323 LEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNS 382
Query: 762 LPTP 765
L +P
Sbjct: 383 LASP 386
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 111 bits (278), Expect = 1e-23
Identities = 154/660 (23%), Positives = 280/660 (42%), Gaps = 93/660 (14%)
Query: 864 PQIPCLPSEPFDYEYP---IPPDNPVQIQPLSSGPSQNSEQPIVHRVSQRPRKQPTYLQD 920
P +P P P ++ P +PP N Q G ++ ++ + T ++
Sbjct: 707 PDLP--PESPTEFPDPFKELPPINSHQTNSSLGGIGDSNAYTTINSKKRSLEDNETEIKV 764
Query: 921 YHCTLAATSTVVPANSSSKGTSHPLSQVISYHKLDPSYHAFIMNITTTVEPTRYSEAVKH 980
T + SK H ++ V + + P I TT+ RY EA+ +
Sbjct: 765 SRDTWNTKNMRSLEPPRSKKRIHLIAAVKAVKSIKP--------IRTTL---RYDEAITY 813
Query: 981 -------ECWRVAMN*EIEALERNNTWLLVDKPPDKTPIGCKWVYRIKY----KQDGTID 1029
E + A + E+ L + TW D+ D+ I K V + K+DGT
Sbjct: 814 NKDIKEKEKYIEAYHKEVNQLLKMKTWD-TDEYYDRKEIDPKRVINSMFIFNKKRDGT-- 870
Query: 1030 RYKARLVVKGYTQIEGIDFMDTFSPVAKMTT-----LRVLLSLVSTKNWFLHQLDVDNAF 1084
+KAR V +G I DT+ + T L LSL N+++ QLD+ +A+
Sbjct: 871 -HKARFVARG-----DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAY 924
Query: 1085 LHAKLDEEIYMSLPQ--GMNSDKPNQVCLLQKSLYGLKQASRQWFSTLCQALQGLGFTQS 1142
L+A + EE+Y+ P GMN +++ L+KSLYGLKQ+ W+ T+ L +
Sbjct: 925 LYADIKEELYIRPPPHLGMN----DKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEE 980
Query: 1143 FADHTLYVKKSATGSFTALLLYVDDVLLAGNDMDEIKLVKHSLHQKF--RIKDLGEAK-- 1198
+ K S + L+VDD++L D++ K + +L +++ +I +LGE+
Sbjct: 981 VRGWSCVFKNSQ----VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNE 1036
Query: 1199 ---FFLGLAIARSQKGIILNQRKYALELLSDSGLLGGKSATTPMDCSQKLSASSGTP--- 1252
LGL I + Q+G KY + +S P++ + ++ G P
Sbjct: 1037 IQYDILGLEI-KYQRG------KYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLY 1089
Query: 1253 -------------LSDISSYRRLIGRLLYL-TTTRPDIAYVVNQLSQFLSAPTDMHEAAA 1298
+ ++LIG Y+ R D+ Y +N L+Q + P+
Sbjct: 1090 IDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMT 1149
Query: 1299 HRVLRYIKGSPGCGLFY----PAASSTVLTAFSDSDGAGCVDTRKSITGYCMFLGSSLVS 1354
+ +++++ + L + P L A SD+ G KS G L ++
Sbjct: 1150 YELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDA-SYGNQPYYKSQIGNIYLLNGKVIG 1208
Query: 1355 WRSKKQTTTSRSSCEAEYRAMAATVCEVQWLIYLLQDLQVSQTSPV--SMFCDNQSAMHI 1412
+S K + T S+ EAE A++ +V + L YL+Q+L P+ + D++S + I
Sbjct: 1209 GKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQEL---NKKPIIKGLLTDSRSTISI 1265
Query: 1413 AHNPSYHE-RTKHIELDCHIVREKITQGLVHLLPVTSSLQLADIFTKPLSPAPFRHIFSK 1471
+ + + R + +R++++ +++ + + +AD+ TKPL F+ + +K
Sbjct: 1266 IKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNK 1325
Score = 81.6 bits (200), Expect = 1e-14
Identities = 55/184 (29%), Positives = 88/184 (46%), Gaps = 17/184 (9%)
Query: 595 DHVCEVCPIAKQ--------KRLKFPLSNSTSDCIFQMIHVDIWGPVSVLSLNGFSYFLT 646
D+ C C I K RLK+ S FQ +H DI+GPV L + SYF++
Sbjct: 207 DYQCPDCLIGKSTKHRHIKGSRLKYQNSYEP----FQYLHTDIFGPVHNLPKSAPSYFIS 262
Query: 647 IVDDYSRYTWVYLL--KSKDEVQTLVKDFCAFVTNQFGVSVKIVRSDNGKEF---VLSQF 701
D+ +++ WVY L + +D + + AF+ NQF SV +++ D G E+ L +F
Sbjct: 263 FTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKF 322
Query: 702 YAEKGIIHHTSCVETPQQNSIVERKHQHILNVARALLFQAHLPKIFWAHAIIHSIFLINR 761
+ GI + + + + ER ++ +L+ R L + LP W AI S + N
Sbjct: 323 LEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNS 382
Query: 762 LPTP 765
L +P
Sbjct: 383 LASP 386
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 110 bits (275), Expect = 3e-23
Identities = 131/536 (24%), Positives = 236/536 (43%), Gaps = 53/536 (9%)
Query: 973 RYSEAVKH-------ECWRVAMN*EIEALERNNTWLLVDKPPDKTPIGCKWVYRIKY--- 1022
RY EA+ + + + A + EI L + NTW +K D+ I K V +
Sbjct: 1248 RYDEAITYNKDNKEKDRYVEAYHKEISQLLKMNTWD-TNKYYDRNDIDPKKVINSMFIFN 1306
Query: 1023 -KQDGTIDRYKARLVVKGYTQIEGIDFMDTFSPVAKMTTLRVLLSLVSTKNWFLHQLDVD 1081
K+DGT +KAR V +G Q D S L LS+ ++++ QLD+
Sbjct: 1307 KKRDGT---HKARFVARGDIQHPDTYDSDMQSNTVHHYALMTSLSIALDNDYYITQLDIS 1363
Query: 1082 NAFLHAKLDEEIYMSLPQ--GMNSDKPNQVCLLQKSLYGLKQASRQWFSTLCQALQGLGF 1139
+A+L+A + EE+Y+ P G+N +++ L+KSLYGLKQ+ W+ T+ L
Sbjct: 1364 SAYLYADIKEELYIRPPPHLGLN----DKLLRLRKSLYGLKQSGANWYETIKSYLINCCD 1419
Query: 1140 TQSFADHTLYVKKSATGSFTALLLYVDDVLLAGNDMDEIKLVKHSLHQKF--RIKDLGEA 1197
Q + K S + L+VDD++L D++ K + +L +++ +I +LGE+
Sbjct: 1420 MQEVRGWSCVFKNSQ----VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGES 1475
Query: 1198 K-----FFLGLAIA-RSQKGIILNQRKYALELLSDSGL---LGGKSATTPMD-----CSQ 1243
LGL I + K + L K E L + GK P
Sbjct: 1476 DNEIQYDILGLEIKYQRSKYMKLGMEKSLTEKLPKLNVPLNPKGKKLRAPGQPGHYIDQD 1535
Query: 1244 KLSASSGTPLSDISSYRRLIGRLLYL-TTTRPDIAYVVNQLSQFLSAPTDMHEAAAHRVL 1302
+L + ++LIG Y+ R D+ Y +N L+Q + P+ + ++
Sbjct: 1536 ELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELI 1595
Query: 1303 RYIKGSPGCGLFY----PAASSTVLTAFSDSDGAGCVDTRKSITGYCMFLGSSLVSWRSK 1358
+++ + L + P L A SD+ G KS G L ++ +S
Sbjct: 1596 QFMWDTRDKQLIWHKNKPTKPDNKLVAISDA-SYGNQPYYKSQIGNIFLLNGKVIGGKST 1654
Query: 1359 KQTTTSRSSCEAEYRAMAATVCEVQWLIYLLQDLQVSQTSPV--SMFCDNQSAMHIAHNP 1416
K + T S+ EAE A++ + + L +L+Q+L P+ + D++S + I +
Sbjct: 1655 KASLTCTSTTEAEIHAVSEAIPLLNNLSHLVQEL---NKKPIIKGLLTDSRSTISIIKST 1711
Query: 1417 SYHE-RTKHIELDCHIVREKITQGLVHLLPVTSSLQLADIFTKPLSPAPFRHIFSK 1471
+ + R + +R++++ +++ + + +AD+ TKPL F+ + +K
Sbjct: 1712 NEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNK 1767
Score = 88.2 bits (217), Expect = 2e-16
Identities = 79/310 (25%), Positives = 134/310 (42%), Gaps = 32/310 (10%)
Query: 478 INVLFLPNFEFNLISVHKLVKSLRFRLTFSDDDCLIQDSNACKMIGTARAVRSLYILNND 537
I L PN ++L+S+ +L +T ++ S+ + + Y L+
Sbjct: 510 IKALHTPNIAYDLLSLSELANQ---NITACFTRNTLERSDGTVLAPIVKH-GDFYWLSKK 565
Query: 538 SLSPFPSCNSVSTCKSQNLVCEFSPSVQNLWHYRLGHPSF--VKGQSIKDLFPYVQYTQ- 594
L PS S T + N + L H LGH +F ++ K+ Y++ +
Sbjct: 566 YL--IPSHISKLTINNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDI 623
Query: 595 ------DHVCEVCPIAKQ--------KRLKFPLSNSTSDCIFQMIHVDIWGPVSVLSLNG 640
+ C C I K RLK+ S FQ +H DI+GPV L +
Sbjct: 624 EWSNASTYQCPDCLIGKSTKHRHVKGSRLKYQESYEP----FQYLHTDIFGPVHHLPKSA 679
Query: 641 FSYFLTIVDDYSRYTWVYLL--KSKDEVQTLVKDFCAFVTNQFGVSVKIVRSDNGKEF-- 696
SYF++ D+ +R+ WVY L + ++ + + AF+ NQF V +++ D G E+
Sbjct: 680 PSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTN 739
Query: 697 -VLSQFYAEKGIIHHTSCVETPQQNSIVERKHQHILNVARALLFQAHLPKIFWAHAIIHS 755
L +F+ +GI + + + + ER ++ +LN R LL + LP W A+ S
Sbjct: 740 KTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFS 799
Query: 756 IFLINRLPTP 765
+ N L +P
Sbjct: 800 TIIRNSLVSP 809
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 109 bits (273), Expect = 5e-23
Identities = 154/657 (23%), Positives = 279/657 (42%), Gaps = 87/657 (13%)
Query: 864 PQIPCLPSEPFDYEYP---IPPDNPVQIQPLSSGPSQNSEQPIVHRVSQRPRKQPTYLQD 920
P +P P P ++ P +PP N Q G ++ ++ + T ++
Sbjct: 1134 PDLP--PESPTEFPDPFKELPPINSHQTNSSLGGIGDSNAYTTINSKKRSLEDNETEIKV 1191
Query: 921 YHCTLAATSTVVPANSSSKGTSHPLSQVISYHKLDPSYHAFIMNITTTVEPTRYSEAVKH 980
T + SK H ++ V + + P I TT+ RY EA+ +
Sbjct: 1192 SRDTWNTKNMRSLEPPRSKKRIHLIAAVKAVKSIKP--------IRTTL---RYDEAITY 1240
Query: 981 -------ECWRVAMN*EIEALERNNTWLLVDKPPDKTPIGCKWVYRIKY----KQDGTID 1029
E + A + E+ L + TW D+ D+ I K V + K+DGT
Sbjct: 1241 NKDIKEKEKYIEAYHKEVNQLLKMKTWD-TDEYYDRKEIDPKRVINSMFIFNKKRDGT-- 1297
Query: 1030 RYKARLVVKGYTQIEGIDFMDTF--SPVAKMTTLRVLLSLVSTKNWFLHQLDVDNAFLHA 1087
+KAR V +G I+ D DT S L LSL N+++ QLD+ +A+L+A
Sbjct: 1298 -HKARFVARG--DIQHPDTYDTGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYA 1354
Query: 1088 KLDEEIYMSLPQ--GMNSDKPNQVCLLQKSLYGLKQASRQWFSTLCQALQGLGFTQSFAD 1145
+ EE+Y+ P GMN +++ L+KS YGLKQ+ W+ T+ L +
Sbjct: 1355 DIKEELYIRPPPHLGMN----DKLIRLKKSHYGLKQSGANWYETIKSYLIKQCGMEEVRG 1410
Query: 1146 HTLYVKKSATGSFTALLLYVDDVLLAGNDMDEIKLVKHSLHQKF--RIKDLGEAK----- 1198
+ K S + L+VDD++L D++ K + +L +++ +I +LGE+
Sbjct: 1411 WSCVFKNSQ----VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQY 1466
Query: 1199 FFLGLAIARSQKGIILNQRKYALELLSDSGLLGGKSATTPMDCSQKLSASSGTP------ 1252
LGL I + Q+G KY + +S P++ + ++ G P
Sbjct: 1467 DILGLEI-KYQRG------KYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQ 1519
Query: 1253 ----------LSDISSYRRLIGRLLYL-TTTRPDIAYVVNQLSQFLSAPTDMHEAAAHRV 1301
+ ++LIG Y+ R D+ Y +N L+Q + P+ + +
Sbjct: 1520 DELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYEL 1579
Query: 1302 LRYIKGSPGCGLFY----PAASSTVLTAFSDSDGAGCVDTRKSITGYCMFLGSSLVSWRS 1357
++++ + L + P L A SD+ G KS G L ++ +S
Sbjct: 1580 IQFMWDTRDKQLIWHKNKPTEPDNKLVAISDA-SYGNQPYYKSQIGNIFLLNGKVIGGKS 1638
Query: 1358 KKQTTTSRSSCEAEYRAMAATVCEVQWLIYLLQDLQVSQTSPV--SMFCDNQSAMHIAHN 1415
K + T S+ EAE A++ +V + L YL+Q+L P+ + D++S + I +
Sbjct: 1639 TKASLTCTSTTEAEIHAISESVPLLNNLSYLIQEL---NKKPIIKGLLTDSRSTISIIKS 1695
Query: 1416 PSYHE-RTKHIELDCHIVREKITQGLVHLLPVTSSLQLADIFTKPLSPAPFRHIFSK 1471
+ + R + +R++++ +++ + + +AD+ TKPL F+ + +K
Sbjct: 1696 TNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNK 1752
Score = 81.6 bits (200), Expect = 1e-14
Identities = 55/184 (29%), Positives = 88/184 (46%), Gaps = 17/184 (9%)
Query: 595 DHVCEVCPIAKQ--------KRLKFPLSNSTSDCIFQMIHVDIWGPVSVLSLNGFSYFLT 646
D+ C C I K RLK+ S FQ +H DI+GPV L + SYF++
Sbjct: 634 DYQCPDCLIGKSTKHRHIKGSRLKYQNSYEP----FQYLHTDIFGPVHNLPKSAPSYFIS 689
Query: 647 IVDDYSRYTWVYLL--KSKDEVQTLVKDFCAFVTNQFGVSVKIVRSDNGKEF---VLSQF 701
D+ +++ WVY L + +D + + AF+ NQF SV +++ D G E+ L +F
Sbjct: 690 FTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKF 749
Query: 702 YAEKGIIHHTSCVETPQQNSIVERKHQHILNVARALLFQAHLPKIFWAHAIIHSIFLINR 761
+ GI + + + + ER ++ +L+ R L + LP W AI S + N
Sbjct: 750 LEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNS 809
Query: 762 LPTP 765
L +P
Sbjct: 810 LASP 813
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 108 bits (271), Expect = 8e-23
Identities = 55/118 (46%), Positives = 78/118 (65%), Gaps = 5/118 (4%)
Query: 952 HKLDPSYHAFIMNITTTV--EPTRYSEAVKHECWRVAMN*EIEALERNNTWLLVDKPPDK 1009
+KL+P Y + ITTT+ EP A+K W AM E++AL RN TW+LV P ++
Sbjct: 10 NKLNPKYS---LTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQ 66
Query: 1010 TPIGCKWVYRIKYKQDGTIDRYKARLVVKGYTQIEGIDFMDTFSPVAKMTTLRVLLSL 1067
+GCKWV++ K DGT+DR KARLV KG+ Q EGI F++T+SPV + T+R +L++
Sbjct: 67 NILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNV 124
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 92.0 bits (227), Expect = 1e-17
Identities = 43/79 (54%), Positives = 55/79 (69%)
Query: 1267 LYLTTTRPDIAYVVNQLSQFLSAPTDMHEAAAHRVLRYIKGSPGCGLFYPAASSTVLTAF 1326
+YLT TRPD+ + VN+LSQF SA A ++VL Y+KG+ G GLFY A S L AF
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 1327 SDSDGAGCVDTRKSITGYC 1345
+DSD A C DTR+S+TG+C
Sbjct: 61 ADSDWASCPDTRRSVTGFC 79
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 44.7 bits (104), Expect = 0.002
Identities = 37/120 (30%), Positives = 51/120 (41%), Gaps = 9/120 (7%)
Query: 622 FQMIHVDIWGPVSVLSLNGFSYFLTIVDDYSRYTWVYLLKSKDEVQTLVKDFCAFVTNQF 681
F +D GP+ G+ Y L +VD + +TW+Y K+ T VK +
Sbjct: 676 FDKFFIDYIGPLP--PSQGYLYVLVVVDGMTGFTWLYPTKAPSTSAT-VKSLNVLTSIAI 732
Query: 682 GVSVKIVRSDNGKEFVLSQF---YAEKGIIHHTSCVETPQQNSIVERKHQHILNVARALL 738
K++ SD G F S F E+GI S PQ S VERK+ I + LL
Sbjct: 733 ---PKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLL 789
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 44.3 bits (103), Expect = 0.003
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 12/107 (11%)
Query: 622 FQMIHVDIWGPVSVLSLNGFSYFLTIVDDYSRYTWVYLLKSKDEVQTLVKDFCAFVTNQF 681
++ IH+D GP LNG Y L +VD ++Y V L +S V T+ D + +
Sbjct: 849 WKRIHIDFAGP-----LNG-CYLLVVVDAKTKYAEVKLTRSISAVTTI--DLLEEIFSIH 900
Query: 682 GVSVKIVRSDNGKEF---VLSQFYAEKGIIHHTSCVETPQQNSIVER 725
G I+ SDNG + + +Q GI H TS V P+ N ER
Sbjct: 901 GYPETII-SDNGTQLTSHLFAQMCQSHGIEHKTSAVYYPRSNGAAER 946
>POL_MMTVB (P03365) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 899
Score = 43.5 bits (101), Expect = 0.004
Identities = 42/141 (29%), Positives = 64/141 (44%), Gaps = 31/141 (21%)
Query: 643 YFLTIVDDYSRYTWVYLLK---SKDEVQTLVKDFCAFVTNQFGVSVKIVRSDNGKEFV-- 697
Y VD YS +T+ +KD +Q L + F G+ KI ++DN +V
Sbjct: 657 YVHVTVDTYSHFTFATARTGEATKDVLQHLAQSFA-----YMGIPQKI-KTDNAPAYVSR 710
Query: 698 -LSQFYAEKGIIHHTSCVETPQQNSIVERKHQHILNVARALLFQAHLPKIFWA------- 749
+ +F A I H T PQ +IVER HQ+I +A L K+ A
Sbjct: 711 SIQEFLARWKISHVTGIPYNPQGQAIVERTHQNI---------KAQLNKLQKAGKYYTPH 761
Query: 750 HAIIHSIFLINRLPTPILDNQ 770
H + H++F++N + +DNQ
Sbjct: 762 HLLAHALFVLNHVN---MDNQ 779
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 42.7 bits (99), Expect = 0.007
Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 622 FQMIHVDIWGPVSVLSLNGFSYFLTIVDDYSRYTWVYLLKSKDEVQTLVKDFCAFVTNQF 681
F ++D GP+ NG+ + L +VD + + W+Y K+ T VK +
Sbjct: 884 FDKFYIDYIGPLP--PSNGYLHVLVVVDSMTGFVWLYPTKAPSTSAT-VKALNMLTSIAI 940
Query: 682 GVSVKIVRSDNGKEFVLSQF---YAEKGIIHHTSCVETPQQNSIVERKHQHILNVARALL 738
K++ SD G F S F EKGI S PQ + VERK+ I + LL
Sbjct: 941 ---PKVLHSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLL 997
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 39.7 bits (91), Expect = 0.062
Identities = 33/129 (25%), Positives = 68/129 (52%), Gaps = 10/129 (7%)
Query: 636 LSLNGFSYFLTIVDDYSRYTWVYLLKSKDEVQTLVKDFC-AFVTNQFGVSVKIVRSDNGK 694
LS+ G Y LTI+D +++Y + K + +T++K F + + + +K++ +D GK
Sbjct: 1547 LSVQGNRYILTIIDLFTKYGTAVPIPDK-KAETVLKAFVERWAIGEGRIPLKLL-TDQGK 1604
Query: 695 EFV---LSQFYAEKGIIHHTSCVETPQQNSIVERKHQHILNVARALLFQAHLPKIFWAHA 751
EFV +QF I H T+ + N VER ++ I+++ + + +P + W
Sbjct: 1605 EFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKK---KTAVP-MEWDDQ 1660
Query: 752 IIHSIFLIN 760
++++++ N
Sbjct: 1661 VVYAVYAYN 1669
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 39.7 bits (91), Expect = 0.062
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 11/121 (9%)
Query: 622 FQMIHVDIWGPVSVLSLNGFSYFLTIVDDYSRYTWVYLLKSKDEVQTLVKDFCAFVTNQF 681
F +D GP+ NG+ + L +VD + + W+Y K+ T+ +
Sbjct: 886 FDKFFIDYIGPLP--PSNGYLHVLVVVDSMTGFVWLYPTKAPSTSATV-----KALNMLT 938
Query: 682 GVSV-KIVRSDNGKEFVLSQF---YAEKGIIHHTSCVETPQQNSIVERKHQHILNVARAL 737
++V K++ SD G F + F KGI S PQ + VERK+ I + L
Sbjct: 939 SIAVPKVIHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKL 998
Query: 738 L 738
L
Sbjct: 999 L 999
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.326 0.138 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,782,146
Number of Sequences: 164201
Number of extensions: 7057878
Number of successful extensions: 21659
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 21372
Number of HSP's gapped (non-prelim): 173
length of query: 1481
length of database: 59,974,054
effective HSP length: 123
effective length of query: 1358
effective length of database: 39,777,331
effective search space: 54017615498
effective search space used: 54017615498
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 72 (32.3 bits)
Lotus: description of TM0133.5