BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0129.4
         (1259 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein ...   141  1e-32
LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog              133  3e-30
POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains...   129  7e-29
LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog              126  3e-28
M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310...   119  4e-26
Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I retro...    53  6e-06
PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type...    48  1e-04
PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type...    45  0.002
POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type...    44  0.002
PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type...    42  0.008
RTJK_DROFU (P21329) RNA-directed DNA polymerase from mobile elem...    42  0.011
RTJK_DROME (P21328) RNA-directed DNA polymerase from mobile elem...    42  0.014
GUND_CELFI (P50400) Endoglucanase D precursor (EC 3.2.1.4) (Endo...    40  0.052
YMH5_CAEEL (P34472) Hypothetical protein F58A4.5 in chromosome III     39  0.12
RPOB_ASTLO (P27059) DNA-directed RNA polymerase beta chain (EC 2...    36  0.58
PO11_SCICO (Q03277) Retrovirus-related Pol polyprotein from type...    35  0.99
YKY1_SCHPO (O13796) Hypothetical protein C1142.01 in chromosome I      35  1.7
MC50_ARATH (P92555) Hypothetical mitochondrial protein AtMg01250...    35  1.7
CLPB_BIFLO (Q8G4X4) Chaperone clpB                                     34  2.9
RGYR_METJA (Q58907) Reverse gyrase [Includes: Helicase (EC 3.6.1...    33  4.9

>YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein
           (ORF 2)
          Length = 1308

 Score =  141 bits (355), Expect = 1e-32
 Identities = 138/500 (27%), Positives = 230/500 (45%), Gaps = 26/500 (5%)

Query: 243 RSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVLGDYFGGLFT 302
           RSR   L   D+ +RFF+    ++  R  I  L  ++G  +ED   I      ++  LF+
Sbjct: 359 RSRMQLLCDMDRGSRFFYALEKKKGNRKQITCLFAEDGTPLEDPEAIRDRARSFYQNLFS 418

Query: 303 SS--NPEGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPGLDGFPTLFY 360
               +P+  EE  + +   VSE     L  P T +E+ +AL  M   K+PGLDG    F+
Sbjct: 419 PDPISPDACEELWDGLPV-VSERRKERLETPITLDELSQALRLMPHNKSPGLDGLTIEFF 477

Query: 361 QKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISLCNVLFKI 420
           Q +WD +G D      +  +    P    + +L L+PK         +RP+SL +  +KI
Sbjct: 478 QFFWDTLGPDFHRVLTEAFKKGELPLSCRRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKI 537

Query: 421 ITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGRNGMMTLKLD 480
           + K I+ RLK +L ++I   QS  VPGR I DN  ++ +  HF ++  +G + +  L LD
Sbjct: 538 VAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVFLIRDLLHFARR--TGLS-LAFLSLD 594

Query: 481 MSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVLLLLEAYVRV 540
             KA+DRV+  +L G LQ   F P +V  + +   +     CL +I   +   L A+ R 
Sbjct: 595 QEKAFDRVDHQYLIGTLQAYSFGPQFVGYLKT---MYASAECLVKINWSLTAPL-AFGRG 650

Query: 541 I-----LFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFADDSIIFARAN 595
           +     L   ++   +E    LL + +  L+L   K  +   V+S   +ADD I+ A+ +
Sbjct: 651 VRQGCPLSGQLYSLAIEPFLCLLRKRLTGLVL---KEPDMRVVLS--AYADDVILVAQ-D 704

Query: 596 TQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNVNAVESFDKYLG 655
             + E        Y  AS   IN  KS   +  ++  +      +  +++      KYLG
Sbjct: 705 LVDLERAQECQEVYAAASSARINWSKSSGLLEGSLKVDFLPPAFR--DISWESKIIKYLG 762

Query: 656 LPTMIGKFK-TRIFNFVKDRVWKKLKGWK--ESTLSRAGREVLIKSVVQAIPSYVMSCFI 712
           +     ++  ++ F  +++ V  +L  WK     LS  GR ++I  +V +   Y + C  
Sbjct: 763 VYLSAEEYPVSQNFIELEECVLTRLGKWKGFAKVLSMRGRALVINQLVASQIWYRLICLS 822

Query: 713 LPDSLCADIERMVSRFYWGG 732
                 A I+R +  F W G
Sbjct: 823 PTQEFIAKIQRRLLDFLWIG 842


>LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog
          Length = 1259

 Score =  133 bits (334), Expect = 3e-30
 Identities = 143/628 (22%), Positives = 277/628 (43%), Gaps = 71/628 (11%)

Query: 206 LQELQRKDQT------KEVLMAINVAERDLDSLLEQEEVWWKQRSRASWLKHGDKNTRFF 259
           L+EL++++QT      ++ ++ I    +++++    +++     SR+ + +  +K  R  
Sbjct: 320 LKELEKQEQTNSKASRRQEIIKIRAELKEIETQKTLQKI---NESRSWFFEKINKIDRPL 376

Query: 260 HQKANQRRKRNLIEVLKDDNGREVEDDADIARVLGDYFGGLFTSSNPEGIEETTNLV--- 316
            +   ++R++N I+ +K+D G    D  +I   + +Y+  L+ ++  E +EE    +   
Sbjct: 377 ARLIKKKREKNQIDTIKNDRGDITTDPTEIQTTIREYYKHLY-ANKLENLEEMDKFLDTY 435

Query: 317 -AGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPGLDGFPTLFYQKYWDIIGDDVSAFC 375
              R+++  +  L  P T  E+E  +  +   K+PG +GF   FYQ+Y     +++  F 
Sbjct: 436 TLPRLNQEEVESLNRPITSSEIEAIINSLPNKKSPGPEGFTAEFYQRY----KEELVPFL 491

Query: 376 LQVLQGV----IPPGMINQTLLVLIPKIMKPEHATQ-FRPISLCNVLFKIITKTIANRLK 430
           L++ Q +    I P    +  ++LIPK  +     + FRPISL N+  KI+ K +AN+++
Sbjct: 492 LKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANQIQ 551

Query: 431 IILPDIICQTQSAFVP---GRLIIDNALVVYECFHFMKKRISGRNGMMTLKLDMSKAYDR 487
             +  +I   Q  F+P   G   I  ++ + +  +  K         M + +D  KA+D+
Sbjct: 552 QHIKKLIHHDQVGFIPAMQGWFNIRKSINIIQHINRTKD-----TNHMIISIDAEKAFDK 606

Query: 488 VEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLT----EIPSRVLLLLEAYVRVILF 543
           ++  F+   L K+G   +++ +I ++       + L     E P       +      L 
Sbjct: 607 IQQPFMLKPLNKLGIDGTYLKIIRAIYDKPTANIILNGQKLEAPPLKTGTRQGCPLSPLL 666

Query: 544 RLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFADDSIIFARANTQEAECVL 603
             I L  + R  +          + GI++      +S  LFADD I++       A+ +L
Sbjct: 667 PNIVLEVLARAIRQEKE------IKGIQLGKEEVKLS--LFADDMIVYLENPIVSAQNLL 718

Query: 604 NILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNVNAVESFDKYLGLP---TMI 660
            ++S + + SG  IN+ KSQ  +  N  Q     + +L    A +   KYLG+     + 
Sbjct: 719 KLISNFSKVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRI-KYLGIQLTRDVK 777

Query: 661 GKFKTR---IFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVV--QAIPSYVMSCFILPD 715
             FK     + N +K+   K    WK    S  GR  ++K  +  + I  +      LP 
Sbjct: 778 DLFKENYKPLLNEIKEDTNK----WKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPM 833

Query: 716 SLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSFNIALVAKNWWR 775
           +   ++E+   +F W     KR     +   L++    GG+   DFK +  A V K  W 
Sbjct: 834 TFFTELEKTTLKFIWN---QKRA--HIAKSTLSQKNKAGGITLPDFKLYYKATVTKTAWY 888

Query: 776 IY----------TQPETLLAQVFKGVYF 793
            Y          T+P  ++  ++  + F
Sbjct: 889 WYQNRDIDQWNRTEPSEIMPHIYNYLIF 916


>POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains:
           Reverse transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1300

 Score =  129 bits (323), Expect = 7e-29
 Identities = 128/528 (24%), Positives = 235/528 (44%), Gaps = 38/528 (7%)

Query: 267 RKRNLIEVLKDDNGREVEDDADIARVLGDYFGGLFTSSNPEGIEETTNLV----AGRVSE 322
           R + LI  ++++ G    D  +I   +  ++  L+ S+  E ++E    +      ++++
Sbjct: 411 RDKILINKIRNEKGDITTDPEEIQNTIRSFYKRLY-STKLENLDEMDKFLDRYQVPKLNQ 469

Query: 323 THLTVLGEPFTREEVEEALFQMHPTKAPGLDGFPTLFYQKYW-DIIGDDVSAFCLQVLQG 381
             +  L  P + +E+E  +  +   K+PG DGF   FYQ +  D+I      F    ++G
Sbjct: 470 DQVDHLNSPISPKEIEAVINSLPTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEG 529

Query: 382 VIPPGMINQTLLVLIPKIMK-PEHATQFRPISLCNVLFKIITKTIANRLKIILPDIICQT 440
            +P      T+  LIPK  K P     FRPISL N+  KI+ K +ANR++  +  II   
Sbjct: 530 TLPNSFYEATI-TLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPD 588

Query: 441 QSAFVPGRLIIDNALVVYECFHFMKKRISGRNGMMTLKLDMSKAYDRVEWSFLQGVLQKM 500
           Q  F+PG     N        H++ K +  +N M+ + LD  KA+D+++  F+  VL++ 
Sbjct: 589 QVGFIPGMQGWFNIRKSINVIHYINK-LKDKNHMI-ISLDAEKAFDKIQHPFMIKVLERS 646

Query: 501 GFPPSWVSLIMSV--SPLLGFPL---CLTEIPSRVLLLLEAYVRVILFRLIFLSYVERCS 555
           G    ++++I ++   P+    +    L  IP +        +   LF ++         
Sbjct: 647 GIQGPYLNMIKAIYSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIVL-------- 698

Query: 556 QLLLRSV-WLLMLHGIKVANRAPVISHLLFADDSIIFARANTQEAECVLNILSTYERASG 614
           ++L R++     + GI++      IS  L ADD I++          +LN+++++    G
Sbjct: 699 EVLARAIRQQKEIKGIQIGKEEVKIS--LLADDMIVYISDPKNSTRELLNLINSFGEVVG 756

Query: 615 QVINLDKSQLSVSRNVPQNGFNELKQLLNVNAVESFDKYLG--LPTMIGKFKTRIFNFVK 672
             IN +KS   +     Q    E+++    + V +  KYLG  L   +     + F  +K
Sbjct: 757 YKINSNKSMAFLYTKNKQ-AEKEIRETTPFSIVTNNIKYLGVTLTKEVKDLYDKNFKSLK 815

Query: 673 DRVWKKLKGWKESTLSRAGREVLIKSVV--QAIPSYVMSCFILPDSLCADIERMVSRFYW 730
             + + L+ WK+   S  GR  ++K  +  +AI  +      +P     ++E  + +F W
Sbjct: 816 KEIKEDLRRWKDLPCSWIGRINIVKMAILPKAIYRFNAIPIKIPTQFFNELEGAICKFVW 875

Query: 731 GGDVDKRGLQWASWKKLTRSK-FDGGLGFRDFKSFNIALVAKNWWRIY 777
                +        K L + K   GG+   D K +  A+V K  W  Y
Sbjct: 876 NNKKPRIA------KSLLKDKRTSGGITMPDLKLYYRAIVIKTAWYWY 917


>LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog
          Length = 1260

 Score =  126 bits (317), Expect = 3e-28
 Identities = 125/549 (22%), Positives = 238/549 (42%), Gaps = 47/549 (8%)

Query: 253 DKNTRFFHQKANQ-----------RRKRNLIEVLKDDNGREVEDDADIARVLGDYFGGLF 301
           +K+  +F +K N+           +R ++LI  +++ N     D ++I ++L +Y+  L+
Sbjct: 359 NKSKSWFFEKINKIDKPLANLTRKKRVKSLISSIRNGNDEITTDPSEIQKILNEYYKKLY 418

Query: 302 TSSNPEGIEETTNLVAG----RVSETHLTVLGEPFTREEVEEALFQMHPTKAPGLDGFPT 357
            S   E ++E    +      R+S+  + +L  P +  E+   +  +   K+PG DGF +
Sbjct: 419 -SHKYENLKEIDQYLEACHLPRLSQKEVEMLNRPISSSEIASTIQNLPKKKSPGPDGFTS 477

Query: 358 LFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTL----LVLIPKIMK-PEHATQFRPIS 412
            FYQ +     +++    L + Q +   G++  T     + LIPK  K P     +RPIS
Sbjct: 478 EFYQTF----KEELVPILLNLFQNIEKEGILPNTFYEANITLIPKPGKDPTRKENYRPIS 533

Query: 413 LCNVLFKIITKTIANRLKIILPDIICQTQSAFVPGR---LIIDNALVVYECFHFMKKRIS 469
           L N+  KI+ K + NR++  +  II   Q  F+PG      I  ++ V +  + +K +  
Sbjct: 534 LMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINVIQHINKLKNK-- 591

Query: 470 GRNGMMTLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSR 529
                M L +D  KA+D ++  F+   L+K+G   +++ LI ++       + L  +  +
Sbjct: 592 ---DHMILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKLK 648

Query: 530 VLLLLEAYVRVILFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFADDSI 589
              L     +      +  + V     + +R      + GI + +    +S  LFADD I
Sbjct: 649 SFPLRSGTRQGCPLSPLLFNIVMEVLAIAIREE--KAIKGIHIGSEEIKLS--LFADDMI 704

Query: 590 IFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNVNAVES 649
           ++          +L ++  Y   SG  IN  KS   +  N  Q     +K  +    V  
Sbjct: 705 VYLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIYTNNNQ-AEKTVKDSIPFTVVPK 763

Query: 650 FDKYLG--LPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVV--QAIPS 705
             KYLG  L   +       +  ++  + + +  WK    S  GR  ++K  +  +AI +
Sbjct: 764 KMKYLGVYLTKDVKDLYKENYETLRKEIAEDVNKWKNIPCSWLGRINIVKMSILPKAIYN 823

Query: 706 YVMSCFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSFN 765
           +       P S   D+E+++  F W    +++  Q A      ++K  GG+   D + + 
Sbjct: 824 FNAIPIKAPLSYFKDLEKIILHFIW----NQKKPQIAKTLLSNKNK-AGGITLPDLRLYY 878

Query: 766 IALVAKNWW 774
            ++V K  W
Sbjct: 879 KSIVIKTAW 887


>M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310
           (ORF154)
          Length = 154

 Score =  119 bits (299), Expect = 4e-26
 Identities = 60/149 (40%), Positives = 84/149 (56%), Gaps = 1/149 (0%)

Query: 702 AIPSYVMSCFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFD-GGLGFRD 760
           A+P Y MSCF L   LC  +   ++ F+W    +KR + W +W+KL +SK D GGLGFRD
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61

Query: 761 FKSFNIALVAKNWWRIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWI 820
              FN AL+AK  +RI  QP TLL+++ +  YF    ++    G RPSYAW SI+    +
Sbjct: 62  LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGREL 121

Query: 821 FQEGGRWKIGDGSQVDILHDQWLPQGVPV 849
              G    IGDG    +  D+W+    P+
Sbjct: 122 LSRGLLRTIGDGIHTKVWLDRWIMDETPL 150


>Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I
           retrotransposable element R1DM (ORF 2)
          Length = 1021

 Score = 52.8 bits (125), Expect = 6e-06
 Identities = 83/346 (23%), Positives = 130/346 (36%), Gaps = 49/346 (14%)

Query: 167 GRSLTEVPDRLSDVSGLLGRWGKEQFGDLPRKISDGQALLQELQRKDQTKEVLMAINVAE 226
           GR LT  P R +       RW         R++   + LLQ+ +R+D    V + +    
Sbjct: 292 GRKLTRSPSRRA-------RWWTADLCAARREVRRLRRLLQDGRRRDDDAAVELVVVELR 344

Query: 227 RDLDSLLEQEEVWWKQRSRAS---WLK----HGDKNTRFFHQKANQRRKRNLIEVLKDDN 279
           R           + K   RA    W +    H D      ++    RRK   I  L+  N
Sbjct: 345 R-------ASAYYKKLIGRAKMDDWKRFVGDHADDPWGRVYKICRGRRKCTEIGCLRV-N 396

Query: 280 GREVEDDADIARVLGDYFGGLFTSSNPEGIEETTNLVAGRVSETHLTVLGEPFTREEVEE 339
           G  + D  D ARVL   F  +  S  P  I E                  E F   EV+ 
Sbjct: 397 GELITDWGDCARVLLRNFFPVAESEAPTAIAEEVPPAL------------EVF---EVDT 441

Query: 340 ALFQMHPTKAPGLDGFPTLFYQKYWDIIGDDV-SAFCLQVLQGVIPPGMINQTLLVLIPK 398
            + ++   ++PGLDG      +  W  I + + S F   +  G  P       ++ L+  
Sbjct: 442 CVARLKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYFPAEWKCPRVVSLLKG 501

Query: 399 IMKPE-HATQFRPISLCNVLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVV 457
             K +   + +R I L  V  K++   + NR++ +LP+  C+ Q  F  GR + D     
Sbjct: 502 PDKDKCEPSSYRGICLLPVFGKVLEAIMVNRVREVLPE-GCRWQFGFRQGRCVED----- 555

Query: 458 YECFHFMKKRISGRNGMMTLK--LDMSKAYDRVEWSFLQGVLQKMG 501
              +  +K  +        L   +D   A+D VEWS     L  +G
Sbjct: 556 --AWRHVKSSVGASAAQYVLGTFVDFKGAFDNVEWSAALSRLADLG 599


>PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R2 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 711

 Score = 48.1 bits (113), Expect = 1e-04
 Identities = 50/182 (27%), Positives = 84/182 (45%), Gaps = 33/182 (18%)

Query: 331 PFTREEVEEALFQMHPTKAPGLDGF----------PTLFYQKYWDIIGDDVSAFCLQVLQ 380
           P  REE++ A+    P+ APG DG           P  F Q              L +L+
Sbjct: 5   PIAREEIQCAIKGWKPS-APGSDGLTVQAITRTRLPRNFVQ--------------LHLLR 49

Query: 381 GVIP-PGMINQTLLVLIPKIMKPEHATQFRPISLCNVLFKIITKTIANRLKIILPDIICQ 439
           G +P P    +T   LIPK    E+ + +RPI++ + L +++ + +A RL+  +     Q
Sbjct: 50  GHVPTPWTAMRT--TLIPKDGDLENPSNWRPITIASALQRLLHRILAKRLEAAVELHPAQ 107

Query: 440 TQSAFVPGRLIIDNALVVYECFHFMKKRISGRNGMMTLKLDMSKAYDRVEWSFLQGVLQK 499
              A + G L+  N+L++     ++  R   R     + LD+ KA+D V  S +   LQ+
Sbjct: 108 KGYARIDGTLV--NSLLLDT---YISSRREQRKTYNVVSLDVRKAFDTVSHSSICRALQR 162

Query: 500 MG 501
           +G
Sbjct: 163 LG 164


>PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R2 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 869

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 68/274 (24%), Positives = 114/274 (40%), Gaps = 39/274 (14%)

Query: 256 TRFFHQKANQRRKRN--LIEVL--KDDNG--REVEDDADI-------ARVLGDYFGGLFT 302
           T  +H    Q+RK+   L++ L  KD +   R V D+ D         R + DY+  +F 
Sbjct: 74  TTIYHGTNKQKRKQRYALVQSLYKKDISAAARVVLDENDKIATKIPPVRHMFDYWKDVFA 133

Query: 303 SSNPEGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPGLDGFPTLFYQK 362
           +    G    TN+     +  H+  L +P +  E++ A  +    K  G DG       +
Sbjct: 134 TG---GGSAATNINRAPPAP-HMETLWDPVSLIEIKSA--RASNEKGAGPDGVTP----R 183

Query: 363 YWDIIGDDVSA--FCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISLCNVLFKI 420
            W+ + D      + + V  G +P   I  +  V  PKI        FRP+S+C+V+ + 
Sbjct: 184 SWNALDDRYKRLLYNIFVFYGRVP-SPIKGSRTVFTPKIEGGPDPGVFRPLSICSVILRE 242

Query: 421 ITKTIANRLKIILPDIICQT----QSAFVPGRLIIDNALVVYECFHFMKKRISGRNGMMT 476
             K +A R       + C T    Q+A++P   +  N  ++       K+    R  +  
Sbjct: 243 FNKILARRF------VSCYTYDERQTAYLPIDGVCINVSMLTAIIAEAKRL---RKELHI 293

Query: 477 LKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLI 510
             LD+ KA++ V  S L   + + G PP  V  I
Sbjct: 294 AILDLVKAFNSVYHSALIDAITEAGCPPGVVDYI 327


>POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type II
           retrotransposable element R2DM [Contains: Protease (EC
           3.4.23.-); Reverse transcriptase (EC 2.7.7.49);
           Endonuclease]
          Length = 1057

 Score = 44.3 bits (103), Expect = 0.002
 Identities = 60/243 (24%), Positives = 99/243 (40%), Gaps = 25/243 (10%)

Query: 385 PGMINQTLLVLIPKIMKPEHATQFRPISLCNVLFKIITKTIANRLKIILPDIICQTQSAF 444
           P  I     V IPK +  +    FRPIS+ +VL + +   +A RL   +       Q  F
Sbjct: 392 PHSIRLARTVFIPKTVTAKRPQDFRPISVPSVLVRQLNAILATRLNSSIN--WDPRQRGF 449

Query: 445 VPGRLIIDNALVVYECFHFMKKRISGRNGMMTLKLDMSKAYDRVEWSFLQGVLQKMGFPP 504
           +P     DNA +V        K            LD+SKA+D +  + +   L+  G P 
Sbjct: 450 LPTDGCADNATIVDLVLRHSHKHF---RSCYIANLDVSKAFDSLSHASIYDTLRAYGAPK 506

Query: 505 SWVSLIMSV-----SPLLGFPLCLTE-IPSRVLLLLEAYVRVILFRLIFLSYVERCSQLL 558
            +V  + +      + L G      E +P+R +   +  +  ILF L+    ++R  + L
Sbjct: 507 GFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDP-LSPILFNLV----MDRLLRTL 561

Query: 559 LRSVWLLMLHGIKVANRAPVISHLLFADDSIIFARANTQEAECVLNILSTYERASGQVIN 618
              +      G KV N   + +   FADD ++FA       + +L+    +    G  +N
Sbjct: 562 PSEI------GAKVGN--AITNAAAFADDLVLFAETR-MGLQVLLDKTLDFLSIVGLKLN 612

Query: 619 LDK 621
            DK
Sbjct: 613 ADK 615


>PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R2 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 1025

 Score = 42.4 bits (98), Expect = 0.008
 Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 11/186 (5%)

Query: 328 LGEPFTREEVEEALFQMHPTKAPGLDGFPTLFYQKYWDIIGDDVSAFCLQVLQGVIPPGM 387
           L  P + +E++E   +     A G DG  T      W+ I + + +    ++     P  
Sbjct: 315 LWRPISNDEIKEV--EACKRTAAGPDGMTTTA----WNSIDECIKSLFNMIMYHGQCPRR 368

Query: 388 INQTLLVLIPKIMKPEHATQFRPISLCNVLFKIITKTIANRLKIILPDIICQTQSAFVPG 447
              +  VLIPK         FRP+S+ +V  +   + +ANR  I    ++   Q AF+  
Sbjct: 369 YLDSRTVLIPKEPGTMDPACFRPLSIASVALRHFHRILANR--IGEHGLLDTRQRAFIVA 426

Query: 448 RLIIDNALVVYECFHFMKKRISGRNGMMTLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWV 507
             + +N  ++       + +I    G+    LD+ KA+D VE   +   L++   P    
Sbjct: 427 DGVAENTSLLSAMIKEARMKI---KGLYIAILDVKKAFDSVEHRSILDALRRKKLPLEMR 483

Query: 508 SLIMSV 513
           + IM V
Sbjct: 484 NYIMWV 489


>RTJK_DROFU (P21329) RNA-directed DNA polymerase from mobile element
           jockey (EC 2.7.7.49) (Reverse transcriptase)
          Length = 916

 Score = 42.0 bits (97), Expect = 0.011
 Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 12/165 (7%)

Query: 330 EPFTREEVEEALFQMHPTKAPGLDGFPTLFYQKYWDIIGDDVSAFCLQVLQ-----GVIP 384
           +P T EEV+E + ++ P KAPG D    L   +   ++ D    + + +       G  P
Sbjct: 436 DPVTLEEVKELVSKLKPKKAPGED----LLDNRTIRLLPDQALLYLVLIFNSILRVGYFP 491

Query: 385 PGMINQTLLVLIPKIMKPEHATQFRPISLCNVLFKIITKTIANRLKIILPDIICQTQSAF 444
                 ++++++    +P     +RP SL   L K++ + I NR  I+  + + +    F
Sbjct: 492 KARPTASIIMILKPGKQPLDVDSYRPTSLLPSLGKMLERLILNR--ILTSEEVTRAIPKF 549

Query: 445 VPG-RLIIDNALVVYECFHFMKKRISGRNGMMTLKLDMSKAYDRV 488
             G RL       ++   +F  + +  +    +  LD+ +A+DRV
Sbjct: 550 QFGFRLQHGTPEQLHRVVNFALEALEKKEYAGSCFLDIQQAFDRV 594


>RTJK_DROME (P21328) RNA-directed DNA polymerase from mobile element
           jockey (EC 2.7.7.49) (Reverse transcriptase)
          Length = 916

 Score = 41.6 bits (96), Expect = 0.014
 Identities = 74/322 (22%), Positives = 120/322 (36%), Gaps = 63/322 (19%)

Query: 241 KQRSRASWLKHGDKNTRFFHQ-------KANQRRKRNLIEVLKDDNGREVEDDADIARVL 293
           K+R R  + + GD   +  H        KA  RRK+  I+   D+ G +   +  + R+ 
Sbjct: 309 KRRVRKEYARTGDPRMQQIHSRLANCLHKALARRKQAQIDTFLDNLGADASTNYSLWRIT 368

Query: 294 GDYFGGLFTSS---NPEGIEETTNLVAGRVSETHLT-------------------VLGEP 331
             +       S   NP G    T+L    V   +L                     L  P
Sbjct: 369 KRFKAQPTPKSAIKNPSGGWCRTSLEKTEVFANNLEQRFTPYNYAPESLCRQVEEYLESP 428

Query: 332 F---------TREEVEEALFQMHPTKAPGLDGFPTLFYQKYWDIIGDDVSAFCLQVLQGV 382
           F         T EEV+  + ++   KAPG D    L   +   ++ D    F   +   V
Sbjct: 429 FQMSLPLSAVTLEEVKNLIAKLPLKKAPGED----LLDNRTIRLLPDQALQFLALIFNSV 484

Query: 383 IPPGMI----NQTLLVLIPKIMK-PEHATQFRPISLCNVLFKIITKTIANRLKIILPDII 437
           +  G          +++I K  K P     +RP SL   L KI+ + I NRL      + 
Sbjct: 485 LDVGYFPKAWKSASIIMIHKTGKTPTDVDSYRPTSLLPSLGKIMERLILNRL------LT 538

Query: 438 CQTQSAFVPG-----RLIIDNALVVYECFHFMKKRISGRNGMMTLKLDMSKAYDRVEWSF 492
           C+  +  +P      RL       ++   +F  + +  +   +   LD+ +A+DRV W  
Sbjct: 539 CKDVTKAIPKFQFGFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRV-WH- 596

Query: 493 LQGVLQKMG--FPPSWVSLIMS 512
             G+L K    FPP    ++ S
Sbjct: 597 -PGLLYKAKRLFPPQLYLVVKS 617


>GUND_CELFI (P50400) Endoglucanase D precursor (EC 3.2.1.4)
           (Endo-1,4-beta-glucanase) (Cellulase)
          Length = 747

 Score = 39.7 bits (91), Expect = 0.052
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 10/121 (8%)

Query: 147 FEELWLQKNEECKEVIAETWGRSLTEVPDRLSDVSGLL-GRWGKEQFGDLPRKISDGQAL 205
           F++ W QK+ +   + A+ WG +   + D   D++ LL G WG  + G  PR+     A 
Sbjct: 311 FDQKWFQKDFDKASLTADVWGPNWLFIHD--EDIAPLLIGEWG-GRLGQDPRQ-DKWMAA 366

Query: 206 LQELQRKDQTKEVLMAINVAERDLDSLLEQEEVWWKQRSRASWL-----KHGDKNTRFFH 260
           L++L  + +  +    +N    D   LL  +   W +   ++ L     KHG K     H
Sbjct: 367 LRDLVAERRLSQTFWVLNPNSGDTGGLLLDDWKTWDEVKYSTMLEPTLWKHGGKYVGLDH 426

Query: 261 Q 261
           Q
Sbjct: 427 Q 427


>YMH5_CAEEL (P34472) Hypothetical protein F58A4.5 in chromosome III
          Length = 1222

 Score = 38.5 bits (88), Expect = 0.12
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 3/117 (2%)

Query: 385 PGMINQTLLVLIPKIMKPEHATQFRPISLCNVLFKIITKTIANRLKIILPDIICQTQSAF 444
           P      +++ IPK   P   + +RPISL +   +I+ + I +R++     ++   Q  F
Sbjct: 662 PNRWKHAVIIPIPKKGNPSSPSNYRPISLTDPFARIMERIICSRIRSEYSHLLSPHQHGF 721

Query: 445 VPGRLIIDNALVVYECFHFMKKRISGRNGMMTLKLDMSKAYDRVEWSFLQGVLQKMG 501
           +  R    + +     +H + K       +  L  D +KA+D+V    L   L   G
Sbjct: 722 LNFRSCPSSLVRSISLYHSILK---NEKSLDILFFDFAKAFDKVSHPILLKKLALFG 775


>RPOB_ASTLO (P27059) DNA-directed RNA polymerase beta chain (EC
           2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta
           subunit) (RNA polymerase beta subunit)
          Length = 1076

 Score = 36.2 bits (82), Expect = 0.58
 Identities = 24/128 (18%), Positives = 56/128 (43%), Gaps = 4/128 (3%)

Query: 584 FADDSIIFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLN 643
           F D  II  R   ++    +++    ++    +IN  + +  +++N+P      +K L N
Sbjct: 691 FEDAIIISERLRNEDILTSIHV----KKCKSFLINHKEKKEEITKNIPDIKLKNVKNLNN 746

Query: 644 VNAVESFDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAI 703
              ++   K  G   +IG  K R+ N+  + +++ L  ++   +S    + L+  V    
Sbjct: 747 NGIIKIGSKINGKEILIGIIKKRLINYEVELIYEILSEYERKNISVLSPKNLVGIVTNTK 806

Query: 704 PSYVMSCF 711
              + +C+
Sbjct: 807 IHKIKNCY 814


>PO11_SCICO (Q03277) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R1 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 1004

 Score = 35.4 bits (80), Expect = 0.99
 Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 12/161 (7%)

Query: 335 EEVEEALFQMHPTKAPGLDGFPTLFYQKYWDIIGDDVSAFCLQ---VLQGVIPPGMINQT 391
           +EV +++ +    K+PG DG      +  W  I + +  FCL    +L+   P      +
Sbjct: 408 DEVSDSVRRCKVRKSPGPDGIVGEMVRAVWGAIPEYM--FCLYKQCLLESYFPQKWKIAS 465

Query: 392 LLVLIPKIMK-PEHATQFRPISLCNVLFKIITKTIANRLKIILPDI-ICQTQSAFVPGRL 449
           L++L+  + +       +RPI L + L K++   +  RL   L D+ +   Q AF  G+ 
Sbjct: 466 LVILLKLLDRIRSDPGSYRPICLLDNLGKVLEGIMVKRLDQKLMDVEVSPYQFAFTYGKS 525

Query: 450 IIDNALVVYECFHFMKKRISGRNGMMTLKLDMSKAYDRVEW 490
             D     + C        S    ++ L +D   A+D + W
Sbjct: 526 TED----AWRCVQ-RHVECSEMKYVIGLNIDFQGAFDNLGW 561


>YKY1_SCHPO (O13796) Hypothetical protein C1142.01 in chromosome I
          Length = 667

 Score = 34.7 bits (78), Expect = 1.7
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 13/130 (10%)

Query: 191 QFGDLPRKISDGQALLQELQ-RKDQTKEVLMAINVAERDL--DSLLEQEEVWWKQRSR-- 245
           QF +L   +S    LL E   RK   + +L    ++   L  D+ L + +V+ +  SR  
Sbjct: 523 QFAELTENLSRRVILLNEQSLRKFLPQRILQGTILSFDPLPPDTYLSESQVFGRDISRRI 582

Query: 246 ASWLKHGDKNTRFFHQKANQRRKRN--------LIEVLKDDNGREVEDDADIARVLGDYF 297
           AS+L       R  ++   +             L++ ++ + G E ED   +   L  +F
Sbjct: 583 ASFLSDYLSRAREVNENEEEPPAHEFDLPPAEQLLQQIESEVGEESEDGTPVMTRLRSFF 642

Query: 298 GGLFTSSNPE 307
           G LFTS+N E
Sbjct: 643 GSLFTSTNSE 652


>MC50_ARATH (P92555) Hypothetical mitochondrial protein AtMg01250
           (ORF102)
          Length = 122

 Score = 34.7 bits (78), Expect = 1.7
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query: 546 IFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFADDS 588
           +F+   E  S L  R+     L GI+V+N +P I+HLLFADD+
Sbjct: 38  LFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINHLLFADDT 80


>CLPB_BIFLO (Q8G4X4) Chaperone clpB
          Length = 889

 Score = 33.9 bits (76), Expect = 2.9
 Identities = 26/79 (32%), Positives = 39/79 (48%), Gaps = 8/79 (10%)

Query: 132 DRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSLTEVPDRLSDVSGLLGRWGKEQ 191
           D  +RK ++ E     EE+ L+K E+      E  G+   E+ D    +SGL  RW  EQ
Sbjct: 414 DELQRKVTRLE----MEEMQLKKAED--PASKERLGKLQAELADTREKLSGLKARWDAEQ 467

Query: 192 FGDLPRKISDGQALLQELQ 210
            G    K+ D +A L +L+
Sbjct: 468 AGH--NKVGDLRAKLDDLR 484


>RGYR_METJA (Q58907) Reverse gyrase [Includes: Helicase (EC
           3.6.1.-); Topoisomerase (EC 5.99.1.3)] [Contains: Mja
           r-Gyr intein]
          Length = 1613

 Score = 33.1 bits (74), Expect = 4.9
 Identities = 33/120 (27%), Positives = 54/120 (44%), Gaps = 11/120 (9%)

Query: 585 ADDSIIFARANTQEAECVLNILSTYERASGQVINLDKS--QLSVSRNVPQNGFNELKQLL 642
           A ++I   R    E + +   ++T     G+ I  D +   L  +RN+ + GFNE+ +  
Sbjct: 659 AKENIEIIREIADEVDAIF--IATDIDTEGEKIGYDIAINALPFNRNIYRVGFNEITKRA 716

Query: 643 NVNAVESFDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQA 702
            + AVESF K   L     K K ++   ++DR       W    LS+   EV  K+ + A
Sbjct: 717 ILKAVESFKKGEELSLDENKVKGQVVRRIEDR-------WIGFRLSQKLWEVFNKNYLSA 769


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.324    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,075,927
Number of Sequences: 164201
Number of extensions: 6763700
Number of successful extensions: 18692
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 18642
Number of HSP's gapped (non-prelim): 51
length of query: 1259
length of database: 59,974,054
effective HSP length: 122
effective length of query: 1137
effective length of database: 39,941,532
effective search space: 45413521884
effective search space used: 45413521884
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 72 (32.3 bits)