BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0069.5
         (595 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

PERF_RAT (P35763) Perforin 1 precursor (P1) (Lymphocyte pore for...    41  0.010
COLG_ARATH (Q8RWD0) Zinc finger protein CONSTANS-LIKE 16               35  0.73
DOC7_MOUSE (Q8R1A4) Dedicator of cytokinesis protein 7 (Fragment)      33  2.8
CO7_HUMAN (P10643) Complement component C7 precursor                   33  2.8
CATV_GVCP (O91466) Viral cathepsin (EC 3.4.22.50) (V-cath) (Cyst...    33  2.8
FMA3_PORGI (Q51826) Major fimbrial subunit protein, type III pre...    32  3.6
DOC7_HUMAN (Q96N67) Dedicator of cytokinesis protein 7 (Fragment)      32  4.7
CILA_LEUMC (O53079) Citrate lyase alpha chain (EC 4.1.3.6) (Citr...    32  4.7
VG30_BPPF3 (P03626) 32.7 kDa protein (ORF 301)                         32  6.1
SIR3_YEAST (P06701) Regulatory protein SIR3 (Silent information ...    32  6.1
FMB2_PORGI (Q51825) Major fimbrial subunit protein, type II prec...    32  6.1
YEP4_YEAST (P40041) Hypothetical 56.6 kDa protein in THO1-ICL1 i...    31  8.0
FMA2_PORGI (Q51822) Major fimbrial subunit protein, type II prec...    31  8.0
CX56_CHICK (P29415) Gap junction Cx56 protein (Connexin 56)            31  8.0
AMYM_BACST (P19531) Maltogenic alpha-amylase precursor (EC 3.2.1...    31  8.0

>PERF_RAT (P35763) Perforin 1 precursor (P1) (Lymphocyte pore
           forming protein) (Cytolysin)
          Length = 554

 Score = 40.8 bits (94), Expect = 0.010
 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 17/164 (10%)

Query: 157 ALARFIEKFGTHILVGLSIGGKDLVLVK----QDVSSNLEPSELKKNLD-----ELGDQL 207
           A  R I  +GTH +  + +GG+  VL      Q     L   E+   L       +G Q 
Sbjct: 210 AYRRLISSYGTHFITAVDLGGRVSVLTALRTCQLTLDGLTADEVGDCLSVEAQVSIGAQA 269

Query: 208 FTGTCNFLPKTKDQKHKVPPAF-DVFGPQIVAFNNSTCVCAKDGITVICAKRGGDTQVSN 266
              +     + K ++HK+  +F   +  + V         + D +       G      +
Sbjct: 270 SVSSEYKACEEKKKQHKIATSFHQTYRERHVEVLGGPLDSSNDLLF------GNQATPEH 323

Query: 267 HSEWLLTVPNKPDAVDFSFIPFTSLLK-AAPGRGFLSHAINLYL 309
            S W+ ++P +PD VD+S  P   LL+ + P R  L  AI+ Y+
Sbjct: 324 FSTWIASLPTRPDVVDYSLEPLHILLEDSDPKREALRQAISHYV 367


>COLG_ARATH (Q8RWD0) Zinc finger protein CONSTANS-LIKE 16
          Length = 417

 Score = 34.7 bits (78), Expect = 0.73
 Identities = 29/110 (26%), Positives = 42/110 (37%), Gaps = 16/110 (14%)

Query: 429 GKKFSHVCTAPVKYNPSWSSDKDVAFIVTGVQLHVKKHESRSVLHLRLLFSKVSNAIVVK 488
           G K +  C + VK    W    D AF+       V      +  H R+     S A+V  
Sbjct: 10  GAKTARACDSCVKRRARWYCAADDAFLCQSCDSLVHSANPLARRHERVRLKTASPAVVKH 69

Query: 489 SN------------WTQGSTQRS----GSGSGSGSSVFSAISTSIQGKDQ 522
           SN            W  G T+++    GSG  + SS+F  +   I  +DQ
Sbjct: 70  SNHSSASPPHEVATWHHGFTRKARTPRGSGKKNNSSIFHDLVPDISIEDQ 119


>DOC7_MOUSE (Q8R1A4) Dedicator of cytokinesis protein 7 (Fragment)
          Length = 727

 Score = 32.7 bits (73), Expect = 2.8
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 360 KLYVNTAKVTVGKRPVTG--MRLFLEGMKCNRLAIHLQYLLNTPTMLNNKIED 410
           ++ V T  VT  K  + G  +++ L+ M CN+ A++LQ+   T   L +K  +
Sbjct: 75  EIIVQTVSVTESKESILGGVLKVLLQSMACNQSAVYLQHCFATQRALVSKFPE 127


>CO7_HUMAN (P10643) Complement component C7 precursor
          Length = 843

 Score = 32.7 bits (73), Expect = 2.8
 Identities = 19/58 (32%), Positives = 34/58 (57%), Gaps = 7/58 (12%)

Query: 149 VPSSWDPTALARFIEKFGTHILVGLSIGGKDLVL-------VKQDVSSNLEPSELKKN 199
           +PS +D +A  R I+++GTH L   S+GG+  VL       +KQ+  +++E  + K +
Sbjct: 283 LPSLYDYSAYRRLIDQYGTHYLQSGSLGGEYRVLFYVDSEKLKQNDFNSVEEKKCKSS 340


>CATV_GVCP (O91466) Viral cathepsin (EC 3.4.22.50) (V-cath)
           (Cysteine proteinase) (CP)
          Length = 333

 Score = 32.7 bits (73), Expect = 2.8
 Identities = 31/93 (33%), Positives = 43/93 (45%), Gaps = 10/93 (10%)

Query: 3   EGIVEKALNSLGKGFD---LTSDFRLKFCKGEERLVILNETERRELTVPGFGPVTDVSVD 59
           EG V  A N    GFD     S F L    G  R V+ NE + REL V   GP++ V++D
Sbjct: 201 EGGVVSAENEPYYGFDGVCKKSPFELSI-SGSRRYVLQNENKLRELLVVN-GPIS-VAID 257

Query: 60  IKCDKGDLTRYQSDILSFTQMSEMFNQKSSIPG 92
           +     DL  Y++ I    + +E  N    + G
Sbjct: 258 V----SDLINYKAGIADICENNEGLNHAVLLVG 286


>FMA3_PORGI (Q51826) Major fimbrial subunit protein, type III
           precursor (Fimbrillin) (Fimbrilin)
          Length = 353

 Score = 32.3 bits (72), Expect = 3.6
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 60  IKCDKGDLTRYQSDILSFTQMSEMFNQKSSIPGKIPSGYFNTVFGFEAGSW 110
           I C KG LT++    LS  +M+  FN    +    P+ Y+  +  FE+ ++
Sbjct: 243 ILCVKGKLTKHDGTALSSEEMTAAFNAGWIVANNDPTTYYPVLVNFESNNY 293


>DOC7_HUMAN (Q96N67) Dedicator of cytokinesis protein 7 (Fragment)
          Length = 1302

 Score = 32.0 bits (71), Expect = 4.7
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 360 KLYVNTAKVTVGKRPVTG--MRLFLEGMKCNRLAIHLQYLLNTPTMLNNKIED 410
           ++ V T  VT  K  + G  +++ L  M CN+ A++LQ+   T   L +K  +
Sbjct: 650 EIVVQTVSVTESKESILGGVLKVLLHSMACNQSAVYLQHCFATQRALVSKFPE 702


>CILA_LEUMC (O53079) Citrate lyase alpha chain (EC 4.1.3.6) (Citrase
           alpha chain) (Citrate (pro-3S)-lyase alpha chain)
           (Citrate CoA-transferase subunit) (EC 2.8.3.10)
          Length = 512

 Score = 32.0 bits (71), Expect = 4.7
 Identities = 27/91 (29%), Positives = 41/91 (44%), Gaps = 2/91 (2%)

Query: 32  ERLVILNETERRELTVPGFGPVTDVSVDIKCDK-GDLTRYQSDILSFTQ-MSEMFNQKSS 89
           ++LV++ +T       P     T V   +K DK GD  +  S    FT+   E+   K+ 
Sbjct: 201 DKLVLITDTIMPYPNTPASIKQTQVDYVVKVDKVGDPDKIGSGATRFTKDPKELKIAKTV 260

Query: 90  IPGKIPSGYFNTVFGFEAGSWASDAANTKFL 120
               + S YF   F F+ GS  +  A T+FL
Sbjct: 261 NDVIVNSKYFKNDFSFQTGSGGAALAVTRFL 291


>VG30_BPPF3 (P03626) 32.7 kDa protein (ORF 301)
          Length = 301

 Score = 31.6 bits (70), Expect = 6.1
 Identities = 28/113 (24%), Positives = 46/113 (39%), Gaps = 10/113 (8%)

Query: 374 PVTGMRLFLEGMKCNRLAIH-LQYLLNTPTMLNNKIEDTTTWSEEIIDDRFLEAISGKKF 432
           PVT  RL    M+ +R   H L ++   PT +++ I         +   R L+A S  ++
Sbjct: 84  PVTDERL--TAMETHRHTGHDLVFITQAPTFVHHHIRKLVGLHIHLYRSRGLQAASKYEW 141

Query: 433 SHVCTAPVKYNPS-------WSSDKDVAFIVTGVQLHVKKHESRSVLHLRLLF 478
           SHVC +P             W   K+     T   +H  K +    + + L+F
Sbjct: 142 SHVCDSPNDRKEQQRADFVLWKFPKEHFAFYTSAVMHTHKFKMPKKIGVLLVF 194


>SIR3_YEAST (P06701) Regulatory protein SIR3 (Silent information
           regulator 3)
          Length = 978

 Score = 31.6 bits (70), Expect = 6.1
 Identities = 17/80 (21%), Positives = 41/80 (51%)

Query: 112 SDAANTKFLGLDGYVIKLFNVHIDRYPLVLSKQVIEAVPSSWDPTALARFIEKFGTHILV 171
           ++  N   L L+  +IK+  +  D      SK++ + +  +W+P      +++F    +V
Sbjct: 873 TEGTNRHTLALETVLIKMVKMLRDNPGYKASKEIKKVICGAWEPAITIEKLKQFSWISVV 932

Query: 172 GLSIGGKDLVLVKQDVSSNL 191
              +G K +V+V ++ S+++
Sbjct: 933 NDLVGEKLVVVVLEEPSASI 952


>FMB2_PORGI (Q51825) Major fimbrial subunit protein, type II
           precursor (Fimbrillin) (Fimbrilin)
          Length = 350

 Score = 31.6 bits (70), Expect = 6.1
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 60  IKCDKGDLTRYQSDILSFTQMSEMFNQKSSIPGKIPSGYFNTVFGFEAGSW 110
           I C KG LT++    LS  +M+  FN    +    P+ Y+  +  FE+ ++
Sbjct: 240 ILCIKGKLTKHDGTPLSSEEMTAAFNAGWIVANNDPTTYYPVLVNFESNNY 290


>YEP4_YEAST (P40041) Hypothetical 56.6 kDa protein in THO1-ICL1
           intergenic region
          Length = 505

 Score = 31.2 bits (69), Expect = 8.0
 Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 455 IVTGVQLHVKKHESRSVLHLRLLFSKVSNAIVVKSNWTQGSTQRSGSGSGSG-SSVFSAI 513
           +VT     V+++  RS   L     K++   V K   +  S+   GS S S  SS     
Sbjct: 94  LVTAAVQSVRRNRKRSKKKLLDSKKKIARGKVQKIPLSPPSSSNMGSCSASNASSSDEEA 153

Query: 514 STSIQGKDQKKPALVVVDSSV---FPTG---PPVPVQAQKLLK 550
           S   +  +   P+L  + S     +P G   PPVP Q + LLK
Sbjct: 154 SVKEEPAEHALPSLNTITSQKLLPYPNGRTLPPVPTQVRSLLK 196


>FMA2_PORGI (Q51822) Major fimbrial subunit protein, type II
           precursor (Fimbrillin) (Fimbrilin)
          Length = 348

 Score = 31.2 bits (69), Expect = 8.0
 Identities = 16/58 (27%), Positives = 27/58 (45%)

Query: 60  IKCDKGDLTRYQSDILSFTQMSEMFNQKSSIPGKIPSGYFNTVFGFEAGSWASDAANT 117
           I C KG LT++    LS  +M+  FN    +    P+ Y+  +  F + ++  D   T
Sbjct: 238 ILCVKGKLTKHDGTPLSSEEMTAAFNAGWIVADNNPTTYYPVLVNFNSNNYTYDNGYT 295


>CX56_CHICK (P29415) Gap junction Cx56 protein (Connexin 56)
          Length = 510

 Score = 31.2 bits (69), Expect = 8.0
 Identities = 17/66 (25%), Positives = 33/66 (49%), Gaps = 7/66 (10%)

Query: 478 FSKVSNAIVVKSNWTQGSTQRSGS--GSGSGSSVFSAISTSIQGKDQKKPALVVVDSSVF 535
           F+  SNA+  + NW   + ++ G    S +GSS  S++   +  +++    L+ +     
Sbjct: 378 FNSKSNALAAEQNWVNMAAEQQGKAPSSSAGSSTPSSVRHPLPEQEEPLEQLLPL----- 432

Query: 536 PTGPPV 541
           P GPP+
Sbjct: 433 PAGPPI 438


>AMYM_BACST (P19531) Maltogenic alpha-amylase precursor (EC
           3.2.1.133) (Glucan 1,4-alpha-maltohydrolase)
          Length = 719

 Score = 31.2 bits (69), Expect = 8.0
 Identities = 25/77 (32%), Positives = 38/77 (48%), Gaps = 3/77 (3%)

Query: 40  TERRELTVPGFGP-VTDVSVDIKCDKGDLTRYQSDILSFTQMSEMFNQKSSIPGKIPSGY 98
           + R E+ VP     +TDV V       +L  Y  +ILS TQ S +F  KS+ P  +    
Sbjct: 576 SNRIEVYVPNMAAGLTDVKVTAGGVSSNL--YSYNILSGTQTSVVFTVKSAPPTNLGDKI 633

Query: 99  FNTVFGFEAGSWASDAA 115
           + T    E G+W++D +
Sbjct: 634 YLTGNIPELGNWSTDTS 650


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.318    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,039,314
Number of Sequences: 164201
Number of extensions: 3287090
Number of successful extensions: 7868
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 7860
Number of HSP's gapped (non-prelim): 17
length of query: 595
length of database: 59,974,054
effective HSP length: 116
effective length of query: 479
effective length of database: 40,926,738
effective search space: 19603907502
effective search space used: 19603907502
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)