BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0060.4
         (1482 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YHJ1_YEAST (P38766) Hypothetical helicase in SLT2-PUT2 intergeni...    57  3e-07
PIF1_SCHPO (Q9UUA2) DNA repair and recombination protein pif1, m...    54  4e-06
PIF1_YEAST (P07271) DNA repair and recombination protein PIF1, m...    51  3e-05
EX5A_ECOLI (P04993) Exodeoxyribonuclease V alpha chain (EC 3.1.1...    42  0.016
DRL1_ARATH (P60838) Probable disease resistance protein At1g12280      36  0.69
SR13_HUMAN (Q9Y3M8) StAR-related lipid transfer protein 13 (StAR...    35  1.5
CDB1_HUMAN (Q9Y5F3) Protocadherin beta 1 precursor (PCDH-beta1)        35  1.5
SR13_MOUSE (Q923Q2) StAR-related lipid transfer protein 13 (StAR...    35  2.0
HIS4_LISMO (Q8Y9G4) 1-(5-phosphoribosyl)-5-[(5-phosphoribosylami...    35  2.0
EX5A_HAEIN (P45158) Exodeoxyribonuclease V alpha chain (EC 3.1.1...    35  2.0
SYA_SYNEL (Q8DH56) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-...    34  2.6
RHG7_RAT (Q63744) Rho-GTPase-activating protein 7 (Rho-type GTPa...    34  3.4
MUKF_HAEAE (O30867) Chromosome partition protein mukF                  34  3.4
KDAP_MOUSE (O09043) Kidney-derived aspartic protease-like protei...    34  3.4
RHG7_MOUSE (Q9R0Z9) Rho-GTPase-activating protein 7 (Rho-type GT...    33  4.5
NTP1_MSEPV (Q9YW39) Nucleoside triphosphatase I (EC 3.6.1.15) (N...    33  4.5
LMG1_HUMAN (P11047) Laminin gamma-1 chain precursor (Laminin B2 ...    33  4.5
EX5A_BUCBP (Q89AB2) Exodeoxyribonuclease V alpha chain (EC 3.1.1...    33  5.8
CDAS_THEET (P29964) Cyclomaltodextrinase (EC 3.2.1.54) (CDase) (...    33  5.8
PRIA_BORBU (Q45032) Primosomal protein N' (Replication factor Y)       33  7.6

>YHJ1_YEAST (P38766) Hypothetical helicase in SLT2-PUT2 intergenic
            region
          Length = 723

 Score = 57.4 bits (137), Expect = 3e-07
 Identities = 64/217 (29%), Positives = 100/217 (45%), Gaps = 25/217 (11%)

Query: 1021 LFVYGYGGTGKTFLWTTLTYKLRS--EKKIILNVASSGIASLLLHGGRTAHSLFCIPL-N 1077
            +F  G  GTGK+ +  T+  +L S   K+ I   AS+G+A++ + GG T H    I + N
Sbjct: 250  VFYTGSAGTGKSVILQTIIRQLSSLYGKESIAITASTGLAAVTI-GGSTLHKWSGIGIGN 308

Query: 1078 ADEDSCCGIVQGSPKAELL---KLSSLIIWDEAPMVSRYAFEALDRTLRDIMRICNPECF 1134
               D     +Q   + +LL   + + ++I DE  MV     + L++  R I +       
Sbjct: 309  KTIDQLVKKIQS--QKDLLAAWRYTKVLIIDEISMVDGNLLDKLEQIARRIRKN------ 360

Query: 1135 NKPFGGKVVVLGGDFRQILPVIPKGSRAEIVMATINSSRLWRFC--KVLTLTENMRLFSN 1192
            + PFGG  +VL GDF Q+ PV  K      V+     S +W+ C  K + LT+  R   N
Sbjct: 361  DDPFGGIQLVLTGDFFQLPPVAKKDEHN--VVKFCFESEMWKRCIQKTILLTKVFRQQDN 418

Query: 1193 SETSDVEKIKVFAEWVLDIGDGVLG-----DYNDGDA 1224
                 +  I+ + E  +DI   +       DY DG A
Sbjct: 419  KLIDILNAIR-YGELTVDIAKTIRNLNRDIDYADGIA 454



 Score = 46.2 bits (108), Expect = 7e-04
 Identities = 23/59 (38%), Positives = 40/59 (66%), Gaps = 1/59 (1%)

Query: 1397 IKFQRRQFPLLLSFAMTINKSQGKTLSHVGLYLPNPVFSHGQLYVAISRVKTRAGLKIL 1455
            +  +R Q PL+L +A++I+K+QG+T+  + + L   +F  GQ+YVA+SR  T   L++L
Sbjct: 642  VGLERTQIPLMLCWALSIHKAQGQTIQRLKVDL-RRIFEAGQVYVALSRAVTMDTLQVL 699


>PIF1_SCHPO (Q9UUA2) DNA repair and recombination protein pif1,
            mitochondrial precursor
          Length = 805

 Score = 53.5 bits (127), Expect = 4e-06
 Identities = 27/59 (45%), Positives = 42/59 (70%), Gaps = 1/59 (1%)

Query: 1397 IKFQRRQFPLLLSFAMTINKSQGKTLSHVGLYLPNPVFSHGQLYVAISRVKTRAGLKIL 1455
            ++  R Q PL+L++A++I+K+QG+TL  V + L   VF  GQ YVA+SR  T+ GL++L
Sbjct: 704  VQASRSQIPLILAYAISIHKAQGQTLDRVKVDL-GRVFEKGQAYVALSRATTQEGLQVL 761



 Score = 49.7 bits (117), Expect = 6e-05
 Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 24/186 (12%)

Query: 998  LNGGQAKIYEEIISAVNSDGGEFLFVYGYGGTGKTFLWT----TLTYKLRSEKKIILNVA 1053
            L+  Q +I + ++   +S     +F  G  GTGK+ L       L  K R +   +   A
Sbjct: 310  LSDEQKRILDMVVEQQHS-----IFFTGSAGTGKSVLLRKIIEVLKSKYRKQSDRVAVTA 364

Query: 1054 SSGIASLLLHGGRTAHSLFCIPLNADE-DSCCGIVQGSPKA--ELLKLSSLIIWDEAPMV 1110
            S+G+A+  + GG T HS   + L  +  D     ++ + K     L+   LII DE  MV
Sbjct: 365  STGLAACNI-GGVTLHSFAGVGLARESVDLLVSKIKKNKKCVNRWLRTRVLII-DEVSMV 422

Query: 1111 SRYAFEALDRTLRDIMRICNPECFNKPFGGKVVVLGGDFRQILPVIPKGSRAEIVMATIN 1170
                 E +D+ L ++ R+   +  +KPFGG  +VL GDF Q+ PV   G  ++       
Sbjct: 423  DA---ELMDK-LEEVARVIRKD--SKPFGGIQLVLTGDFFQLPPVPENGKESKFCF---- 472

Query: 1171 SSRLWR 1176
             S+ W+
Sbjct: 473  ESQTWK 478


>PIF1_YEAST (P07271) DNA repair and recombination protein PIF1,
            mitochondrial precursor
          Length = 857

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 1379 RQVFIGRMDLMPTDGSMPIKFQRRQFPLLLSFAMTINKSQGKTLSHVGLYLPNPVFSHGQ 1438
            R V +   D    D +      R Q PL+L+++++I+KSQG+TL  V + L   VF  GQ
Sbjct: 669  RMVLVEPEDWAIEDENEKPLVSRVQLPLMLAWSLSIHKSQGQTLPKVKVDL-RRVFEKGQ 727

Query: 1439 LYVAISRVKTRAGLKIL 1455
             YVA+SR  +R GL++L
Sbjct: 728  AYVALSRAVSREGLQVL 744



 Score = 47.0 bits (110), Expect = 4e-04
 Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 20/172 (11%)

Query: 995  LNKLNGGQAKI-------YEEIISAVNSDGGEFLFVYGYGGTGKTFLWTTLTYKLRS--E 1045
            LN  NG + KI        E II    ++ G  +F  G  GTGK+ L   +   L+    
Sbjct: 223  LNPHNGVKVKIPICLSKEQESIIKL--AENGHNIFYTGSAGTGKSILLREMIKVLKGIYG 280

Query: 1046 KKIILNVASSGIASLLLHGGRTAHSLFCIPLNADEDSCCGIVQGSPKAELLKLSSL--II 1103
            ++ +   AS+G+A+  + GG T HS   I    D D     V    +  L +  ++  ++
Sbjct: 281  RENVAVTASTGLAACNI-GGITIHSFAGILGKGDADKLYKKVGRRSRKHLRRWENIGALV 339

Query: 1104 WDEAPMVSRYAFEALDRTLRDIMRICNPECFNKPFGGKVVVLGGDFRQILPV 1155
             DE  M+     + LD   R I +       ++PFGG  ++  GDF Q+ PV
Sbjct: 340  VDEISMLDAELLDKLDFIARKIRKN------HQPFGGIQLIFCGDFFQLPPV 385


>EX5A_ECOLI (P04993) Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)
            (Exodeoxyribonuclease V 67 kDa polypeptide)
          Length = 608

 Score = 41.6 bits (96), Expect = 0.016
 Identities = 39/121 (32%), Positives = 57/121 (46%), Gaps = 22/121 (18%)

Query: 1335 EGAPVMLMRNLDVSTGLCNGTRIVVTHLRPNVVGGIVISGTHVGRQVFIGRMDLMPTDGS 1394
            EG PVM+ RN D + GL NG            +G  +  G   G +V+      MP DG+
Sbjct: 478  EGRPVMIARN-DSALGLFNGD-----------IGIALDRGQ--GTRVWFA----MP-DGN 518

Query: 1395 MPIKFQRRQFPLLLSFAMTINKSQGKTLSHVGLYLPN---PVFSHGQLYVAISRVKTRAG 1451
            +      R      ++AMT++KSQG    H  L LP+   PV +   +Y A++R + R  
Sbjct: 519  IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLS 578

Query: 1452 L 1452
            L
Sbjct: 579  L 579


>DRL1_ARATH (P60838) Probable disease resistance protein At1g12280
          Length = 894

 Score = 36.2 bits (82), Expect = 0.69
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 976  LFNELNFDTVEMS----KLHVECLNKLNGGQAKIYEEIISAVNSDGGEFLFVYGYGGTGK 1031
            L ++ +FDTV ++    ++    +     GQ  + E + + +  DG E + +YG GG GK
Sbjct: 130  LSSQGDFDTVTLATPIARIEEMPIQPTIVGQETMLERVWTRLTEDGDEIVGLYGMGGVGK 189

Query: 1032 TFLWTTLTYKLRSEK 1046
            T L T +  K  SEK
Sbjct: 190  TTLLTRINNKF-SEK 203


>SR13_HUMAN (Q9Y3M8) StAR-related lipid transfer protein 13
           (StARD13) (START domain-containing protein 13) (46H23.2)
          Length = 995

 Score = 35.0 bits (79), Expect = 1.5
 Identities = 34/127 (26%), Positives = 58/127 (44%), Gaps = 12/127 (9%)

Query: 433 LPSSFTGGRRYMFNNCQDAMGICREYGYPD-LFLTMTCNPKWPEIERHVSARCLSAYDRP 491
           LP S     RY+ +NC D +G+ R+ G    +      N  +PE   +V+    SAYD  
Sbjct: 558 LPQSIQQALRYLRSNCLDQVGLFRKSGVKSRIHALRQMNENFPE---NVNYEDQSAYDVA 614

Query: 492 DLACRVFRMKLDQLMKNLKKGKFFGQAISWMYTIEFQKRGLPHAHILLWLSTKDKLHSIE 551
           D+  + FR   + L  N     F      + Y  + Q+     A ILL L+ +++    E
Sbjct: 615 DMVKQFFRDLPEPLFTNKLSETFLH---IYQYVSKEQRLQAVQAAILL-LADENR----E 666

Query: 552 LIDSVIC 558
           ++ +++C
Sbjct: 667 VLQTLLC 673


>CDB1_HUMAN (Q9Y5F3) Protocadherin beta 1 precursor (PCDH-beta1)
          Length = 818

 Score = 35.0 bits (79), Expect = 1.5
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 974  ILLFNELNFDTVEMSKLHVECLNKLNGGQAKIYEEIISAVNSDGGEFLFVYGYGGTGKTF 1033
            IL   E N   V + K+H E L+   G  A+I   ++   N D   F ++    G GK +
Sbjct: 458  ILTVRENNSPAVFIGKVHAEDLDL--GENAQITYSLLPPKNGDLSVFAYISINSGNGKLY 515

Query: 1034 LWTTLTYKLRSEKKIILNVASSGIASL 1060
               T+ Y+   + + ++     G  SL
Sbjct: 516  ALRTMDYEAIQDFQFVVKATDGGFLSL 542


>SR13_MOUSE (Q923Q2) StAR-related lipid transfer protein 13
           (StARD13) (START domain-containing protein 13)
          Length = 1113

 Score = 34.7 bits (78), Expect = 2.0
 Identities = 34/127 (26%), Positives = 58/127 (44%), Gaps = 12/127 (9%)

Query: 433 LPSSFTGGRRYMFNNCQDAMGICREYGYPD-LFLTMTCNPKWPEIERHVSARCLSAYDRP 491
           LP S     RY+ +NC D +G+ R+ G    +      N  +P+   +VS    SAYD  
Sbjct: 676 LPQSIQQALRYLRSNCLDQVGLFRKSGVKSRIHALRQMNENFPD---NVSYEDQSAYDVA 732

Query: 492 DLACRVFRMKLDQLMKNLKKGKFFGQAISWMYTIEFQKRGLPHAHILLWLSTKDKLHSIE 551
           D+  + FR   + L  N     F      + Y  + Q+     A ILL L+ +++    E
Sbjct: 733 DMVKQFFRDLPEPLFTNKLSETFLH---IYQYVPKEQRLQAVQAAILL-LADENR----E 784

Query: 552 LIDSVIC 558
           ++ +++C
Sbjct: 785 VLQTLLC 791


>HIS4_LISMO (Q8Y9G4)
           1-(5-phosphoribosyl)-5-[(5-
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase (EC 5.3.1.16)
           (Phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase)
          Length = 240

 Score = 34.7 bits (78), Expect = 2.0
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 593 MKNGRCSKFFPKNFVEKTSFDSDGYPVYRRRNTGISTNRRGVDLDNGFV-VPYNPKLL-- 649
           +KNG+C + F  +F +KT  + D     +   T  +T    VDLD      P N +++  
Sbjct: 9   LKNGQCVRLFQGDFSKKTVVNEDPIAQAKAFATDGATYLHIVDLDGALEGRPINLEVIQK 68

Query: 650 MKYQAHINIEYCNKSNCIKYLFKYINKGVDRV 681
           MK  A I ++       +  +  Y+  G+DRV
Sbjct: 69  MKITAKIPVQVGGGIRSMAQVDYYLESGIDRV 100


>EX5A_HAEIN (P45158) Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)
          Length = 640

 Score = 34.7 bits (78), Expect = 2.0
 Identities = 17/42 (40%), Positives = 24/42 (56%), Gaps = 3/42 (7%)

Query: 1409 SFAMTINKSQGKTLSHVGLYLP---NPVFSHGQLYVAISRVK 1447
            +F MTI+KSQG    H  + LP   NPV S   ++  ++R K
Sbjct: 565  AFMMTIHKSQGSEFKHTVMVLPTEVNPVLSRELVFTGVTRAK 606


>SYA_SYNEL (Q8DH56) Alanyl-tRNA synthetase (EC 6.1.1.7)
           (Alanine--tRNA ligase) (AlaRS)
          Length = 882

 Score = 34.3 bits (77), Expect = 2.6
 Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 20/149 (13%)

Query: 474 PEIERHVSA-RCLSAYDRPDLACRVFRMKLDQLMKNLKKGKFF-GQAISWMYTIEFQKRG 531
           P++ R  +A +CL   D  ++          +++ N   G +F G+AI+W + +     G
Sbjct: 57  PKVPRATTAQKCLRTNDIENVGRTARHHTFFEMLGNFSFGDYFKGEAIAWAWELMTTVYG 116

Query: 532 LPHAHILLWLSTKDKLHSIELIDSVICAELPDPKVYPLLYQCVSNYMVHGPCGVNRTNSP 591
           LP   +L+ +   D   + ++    +   LP  ++  +  +  SN+   GP G      P
Sbjct: 117 LPPERLLVSVFENDD-EAYDIWHRQV--GLPKERIQRMGEE--SNFWTAGPTG------P 165

Query: 592 CMKNGRCSK----FFPKNFVEKTSFDSDG 616
           C   G CS+    F+P+  +     D DG
Sbjct: 166 C---GPCSEIYYDFYPEKGLANVDLDDDG 191


>RHG7_RAT (Q63744) Rho-GTPase-activating protein 7 (Rho-type
           GTPase-activating protein 7) (p122-RhoGAP) (Deleted in
           liver cancer 1 protein homolog) (Dlc-1) (StAR-related
           lipid transfer protein 12) (StARD12) (START
           domain-containing protein 12)
          Length = 1091

 Score = 33.9 bits (76), Expect = 3.4
 Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 7/150 (4%)

Query: 433 LPSSFTGGRRYMFNNCQDAMGICREYGYPDLFLTMTCNPKWPEIERHVSARCLSAYDRPD 492
           LP S     RY+ N+C D +G+ R+ G       +         E +V+    SAYD  D
Sbjct: 654 LPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQAL--RQMNESAEDYVNYEGQSAYDVAD 711

Query: 493 LACRVFRMKLDQLMKNLKKGKFFGQAISWMYTIEFQK-RGLPHAHILLWLSTKDKLHSIE 551
           +  + FR   + LM N K  + F Q   + Y  + Q+ + +  A +LL    ++ L ++ 
Sbjct: 712 MLKQYFRDLPEPLMTN-KLSETFLQI--YQYVPKDQRLQAIKAAIMLLPDENREVLQTLL 768

Query: 552 LIDSVICAELPDPKVYPL-LYQCVSNYMVH 580
              S + A + + ++ P  L  C++  + H
Sbjct: 769 YFLSHVTAAVKENQMTPTNLAVCLAPSLFH 798


>MUKF_HAEAE (O30867) Chromosome partition protein mukF
          Length = 443

 Score = 33.9 bits (76), Expect = 3.4
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 19/98 (19%)

Query: 233 EFNVLAKSFRRVRDHVQEANSNQVALRLFRHRVNDPKTYNLPTV---------------- 276
           + +++A   +R  D  +E   N  +   +R  V  P  Y++  +                
Sbjct: 127 QLSIVADEIQRASDSAEEGVENNESEHFWRRNVFAPLKYSVAEIFDSIDLSQRIMDENQQ 186

Query: 277 ---DEVAALIVEDFDTSDCGRDIILRTSSGNLQRIYDT 311
              DE+A L+ +D+  +    + +L  +SGNL+ + DT
Sbjct: 187 SIKDEIAELLTKDWQAAISSCERLLDETSGNLRELQDT 224


>KDAP_MOUSE (O09043) Kidney-derived aspartic protease-like protein
           precursor (EC 3.4.23.-) (KDAP-1) (KAP) (Napsin)
          Length = 419

 Score = 33.9 bits (76), Expect = 3.4
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 16/122 (13%)

Query: 8   LNMMVEWETSSEGSRSNTVHSNPDFCSGQELLPQQRNVSDCTNNFNTNFAFVEAESQMYF 67
           LN +  WE  +E SR++T   NP F    + +  Q   +        NF  V       F
Sbjct: 38  LNPLNGWEQLAELSRTSTSGGNPSFVPLSKFMNTQYFGTIGLGTPPQNFTVV-------F 90

Query: 68  DLGEMNM-----ACQYCGAILWYHERAQ-KAKNAISPD---FSICCMKGKISLPYLQDAP 118
           D G  N+      C +     W+H R   KA ++  P+   F+I    G++S    QD  
Sbjct: 91  DTGSSNLWVPSTRCHFFSLACWFHHRFNPKASSSFRPNGTKFAIQYGTGRLSGILSQDNL 150

Query: 119 TL 120
           T+
Sbjct: 151 TI 152


>RHG7_MOUSE (Q9R0Z9) Rho-GTPase-activating protein 7 (Rho-type
           GTPase-activating protein 7) (Deleted in liver cancer 1
           protein homolog) (Dlc-1) (StAR-related lipid transfer
           protein 12) (StARD12) (START domain-containing protein
           12)
          Length = 1092

 Score = 33.5 bits (75), Expect = 4.5
 Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 7/150 (4%)

Query: 433 LPSSFTGGRRYMFNNCQDAMGICREYGYPDLFLTMTCNPKWPEIERHVSARCLSAYDRPD 492
           LP S     RY+ N+C D +G+ R+ G       +         E +V+    SAYD  D
Sbjct: 655 LPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQAL--RQMNESAEDNVNYEGQSAYDVAD 712

Query: 493 LACRVFRMKLDQLMKNLKKGKFFGQAISWMYTIEFQK-RGLPHAHILLWLSTKDKLHSIE 551
           +  + FR   + LM N K  + F Q   + Y  + Q+ + +  A +LL    ++ L ++ 
Sbjct: 713 MLKQYFRDLPEPLMTN-KLSETFLQI--YQYVPKDQRLQAIKAAIMLLPDENREVLQTLL 769

Query: 552 LIDSVICAELPDPKVYPL-LYQCVSNYMVH 580
              S + A + + ++ P  L  C++  + H
Sbjct: 770 YFLSDVTAAVKENQMTPTNLAVCLAPSLFH 799


>NTP1_MSEPV (Q9YW39) Nucleoside triphosphatase I (EC 3.6.1.15)
           (Nucleoside triphosphate phosphohydrolase I) (NPH I)
          Length = 647

 Score = 33.5 bits (75), Expect = 4.5
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 659 EYCNKSNCIKYLFKYINKGVDRVTMSMSVTQSSNEETTVVDEIKQYHDCRYLSPCEAV 716
           E  N+   I   FK+ N+ +D    + S + + + E  + D+IKQY  C+Y+  C+ +
Sbjct: 328 EKLNEFKSIIGNFKFSNEFIDIFRNNDSFSNAKSSEIEIFDKIKQY-SCKYIEACKII 384


>LMG1_HUMAN (P11047) Laminin gamma-1 chain precursor (Laminin B2
           chain)
          Length = 1609

 Score = 33.5 bits (75), Expect = 4.5
 Identities = 17/56 (30%), Positives = 27/56 (47%)

Query: 540 WLSTKDKLHSIELIDSVICAELPDPKVYPLLYQCVSNYMVHGPCGVNRTNSPCMKN 595
           W++  D   ++  +++       DPKV    Y  +S++ V G C  N   S CMKN
Sbjct: 243 WVTATDIRVTLNRLNTFGDEVFNDPKVLKSYYYAISDFAVGGRCKCNGHASECMKN 298


>EX5A_BUCBP (Q89AB2) Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)
          Length = 618

 Score = 33.1 bits (74), Expect = 5.8
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 6/66 (9%)

Query: 1409 SFAMTINKSQGKTLSHVGLYLP---NPVFSHGQLYVAISRVKTRAGLKILICNEDISQRD 1465
            ++ MT++KSQG   S V L LP     + +   +Y A++R K +     +  +E+I  + 
Sbjct: 543  NWTMTVHKSQGSEFSEVVLILPTIMTSILTKELIYTAVTRSKKKL---TIYSDENIFIKS 599

Query: 1466 VTKNIV 1471
            + KNI+
Sbjct: 600  LKKNII 605


>CDAS_THEET (P29964) Cyclomaltodextrinase (EC 3.2.1.54) (CDase)
           (Cyclomaltodextrin hydrolase, decycling)
          Length = 574

 Score = 33.1 bits (74), Expect = 5.8
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 702 KQYHDCRYLSPCE--AVWRTFSFYIHDKWPPVLKQSYHLPKKQVILFNERAPIDDVLERN 759
           ++  + +Y S C   A+ R F+F    K   ++    +  K++VI  NE    +D+L+  
Sbjct: 495 RENEELKYGSFCTLYAIGRVFAFKREYKGKSIIVVLNNSSKQEVIFLNEVEGKEDILKMK 554

Query: 760 KVKKSMFLAWMEANCKYPL 778
           ++K+S  L +++ N  Y L
Sbjct: 555 ELKRSGNLLYLQPNSAYIL 573


>PRIA_BORBU (Q45032) Primosomal protein N' (Replication factor Y)
          Length = 660

 Score = 32.7 bits (73), Expect = 7.6
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 991  HVECLNKLNGGQAKIYEEIISAVNSDGGEFLFVYGYGGTGKTFLWTTL-TYKLRSEKKII 1049
            H +CL +LN  Q  IY+EII    S+     +++G  G+GKT ++  L  Y L  E++++
Sbjct: 128  HKKCL-ELNNEQQNIYKEII---GSEKTNVFYLFGIPGSGKTEIFIKLCEYYLALEQQVL 183


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.322    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,606,537
Number of Sequences: 164201
Number of extensions: 8062383
Number of successful extensions: 16976
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 16959
Number of HSP's gapped (non-prelim): 32
length of query: 1482
length of database: 59,974,054
effective HSP length: 123
effective length of query: 1359
effective length of database: 39,777,331
effective search space: 54057392829
effective search space used: 54057392829
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 72 (32.3 bits)