BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0059.7
(1706 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 165 1e-39
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 160 3e-38
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 157 2e-37
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 157 3e-37
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 153 3e-36
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 151 2e-35
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 151 2e-35
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 150 2e-35
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 139 5e-32
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 116 5e-25
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 105 1e-21
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 104 2e-21
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 104 2e-21
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 104 2e-21
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 102 9e-21
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 100 3e-20
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 100 6e-20
POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.2... 99 1e-19
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 98 2e-19
POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse transcript... 96 6e-19
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 165 bits (417), Expect = 1e-39
Identities = 102/296 (34%), Positives = 156/296 (52%), Gaps = 5/296 (1%)
Query: 699 SVDRKYKPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVK--YTTWLSNVVLVKKANGK 756
+++ K+ K +Q ++ Q ++L GIIR Y + + V + A+GK
Sbjct: 200 TINTKHNLPLYSKYSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGK 259
Query: 757 --WRMCVDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAYSGYNQIPMHRDDEEK 814
+R+ +DY LN+ D P+P++D ++ Y + +D G++QI M + K
Sbjct: 260 QKFRIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSK 319
Query: 815 TAFITDRGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYIDDIIVKTPKGGDHA 874
TAF T G Y Y +PFGLKNA AT+QR M I L+ K VY+DDIIV + +H
Sbjct: 320 TAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHL 379
Query: 875 ADLAVVFEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPDKCQAIMNMKSPRTV 934
L +VFE+L K N++L DKC F + FLG++LT GI+ NP+K +AI P
Sbjct: 380 QSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKP 439
Query: 935 KEVQQLAGRMAAIGRFLPKAALRALPLYTLLKNGATFE-WSAEADAAFTQLKEILS 989
KE++ G +F+P A A P+ LK + + E D+AF +LK ++S
Sbjct: 440 KEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLIS 495
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 160 bits (405), Expect = 3e-38
Identities = 88/284 (30%), Positives = 149/284 (51%), Gaps = 1/284 (0%)
Query: 705 KPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVKYTTWLSNVVLVKKANGKWRMCVDYT 764
+P+ QK R + + I++ ++L +IRE K + W S VVLVKK +G RMC+DY
Sbjct: 941 EPIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESK-SPWSSPVVLVKKKDGSIRMCIDYR 999
Query: 765 DLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAYSGYNQIPMHRDDEEKTAFITDRGTY 824
+NK + PLP+I+A + + +G + ++ D +G+ QIP+ +E TAF +
Sbjct: 1000 KVNKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMIAGFWQIPLDEKSKEITAFAIGSELF 1059
Query: 825 CYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYIDDIIVKTPKGGDHAADLAVVFEQL 884
+ +LPFGL + A +Q M I GDL+G VY+DD+++ + H D+ ++
Sbjct: 1060 EWNVLPFGLVISPALFQGTMEEIIGDLLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRI 1119
Query: 885 KKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPDKCQAIMNMKSPRTVKEVQQLAGRM 944
+K M+L KC + ++LG+ +T G+E K + P VKE+Q G +
Sbjct: 1120 RKSGMKLRASKCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGLV 1179
Query: 945 AAIGRFLPKAALRALPLYTLLKNGATFEWSAEADAAFTQLKEIL 988
+F+ A A L +L+ + W E + AF +LK+++
Sbjct: 1180 GYYRKFILNFAQIASSLTSLISAKVAWIWEKEQEIAFQELKKLV 1223
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 157 bits (397), Expect = 2e-37
Identities = 93/288 (32%), Positives = 151/288 (52%), Gaps = 5/288 (1%)
Query: 706 PVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVKYTTWLSNVVLVKKANG----KWRMCV 761
P+ K+ ++ + ++ Q E+L G+IRE V+ KK + K+R+ +
Sbjct: 206 PIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVI 265
Query: 762 DYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAYSGYNQIPMHRDDEEKTAFITDR 821
DY LN+ D +P+P++D ++ +Y + +D G++QI M + KTAF T
Sbjct: 266 DYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKS 325
Query: 822 GTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYIDDIIVKTPKGGDHAADLAVVF 881
G Y Y +PFGL+NA AT+QR M I L+ K VY+DDII+ + +H + +VF
Sbjct: 326 GHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVF 385
Query: 882 EQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPDKCQAIMNMKSPRTVKEVQQLA 941
+L N++L DKC F + FLG+++T GI+ NP K +AI++ P KE++
Sbjct: 386 TKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFL 445
Query: 942 GRMAAIGRFLPKAALRALPLYTLLKNGATFE-WSAEADAAFTQLKEIL 988
G +F+P A A P+ + LK + E AF +LK ++
Sbjct: 446 GLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALI 493
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 157 bits (396), Expect = 3e-37
Identities = 103/344 (29%), Positives = 166/344 (47%), Gaps = 10/344 (2%)
Query: 654 TNLARGLPRDLSKRMEKLLLSNGKLFAWSSEDMPGIDPAFCSHRLSVDRKYKPVAQKKRQ 713
+ L + P ++E + +FA SE + + RL D +PV K +
Sbjct: 265 SQLKKNFPELFKSQLENICSEYIDIFALESEPITVNNLYKQQLRLKDD---EPVYTKNYR 321
Query: 714 MSAEKQQVIQQQTTELLRAGIIREVKYTTWLSNVVLVKKANG------KWRMCVDYTDLN 767
+ + IQ Q +L++ I+ E + + S ++LV K + KWR+ +DY +N
Sbjct: 322 SPHSQVEEIQAQVQKLIKDKIV-EPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQIN 380
Query: 768 KACPKDPFPLPSIDALVDNSSGYEYLSLMDAYSGYNQIPMHRDDEEKTAFITDRGTYCYT 827
K D FPLP ID ++D +Y S +D SG++QI + + T+F T G+Y +T
Sbjct: 381 KKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFT 440
Query: 828 MLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYIDDIIVKTPKGGDHAADLAVVFEQLKKH 887
LPFGLK A ++QRMMT F + +Y+DD+IV +L VF + +++
Sbjct: 441 RLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREY 500
Query: 888 NMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPDKCQAIMNMKSPRTVKEVQQLAGRMAAI 947
N++L+P+KC+F + FLG+ T++GI + K I N P ++
Sbjct: 501 NLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYY 560
Query: 948 GRFLPKAALRALPLYTLLKNGATFEWSAEADAAFTQLKEILSSP 991
RF+ A + + L K FEW+ E AF LK L +P
Sbjct: 561 RRFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINP 604
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 153 bits (387), Expect = 3e-36
Identities = 85/274 (31%), Positives = 138/274 (50%), Gaps = 1/274 (0%)
Query: 718 KQQVIQQQTTELLRAGIIREVKYTTWLSNVVLVKKANGKWRMCVDYTDLNKACPKDPFPL 777
K Q + + + L++GIIRE K V+ V K G RM VDY LNK + +PL
Sbjct: 424 KMQAMNDEINQGLKSGIIRESKAIN-ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
Query: 778 PSIDALVDNSSGYEYLSLMDAYSGYNQIPMHRDDEEKTAFITDRGTYCYTMLPFGLKNAV 837
P I+ L+ G + +D S Y+ I + + DE K AF RG + Y ++P+G+ A
Sbjct: 483 PLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAP 542
Query: 838 ATYQRMMTRIFGDLMGKSVEVYIDDIIVKTPKGGDHAADLAVVFEQLKKHNMRLNPDKCT 897
A +Q + I G+ V Y+DDI++ + +H + V ++LK N+ +N KC
Sbjct: 543 AHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCE 602
Query: 898 FGVRSGKFLGYMLTNRGIELNPDKCQAIMNMKSPRTVKEVQQLAGRMAAIGRFLPKAALR 957
F KF+GY ++ +G + ++ K P+ KE++Q G + + +F+PK +
Sbjct: 603 FHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQL 662
Query: 958 ALPLYTLLKNGATFEWSAEADAAFTQLKEILSSP 991
PL LLK ++W+ A +K+ L SP
Sbjct: 663 THPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSP 696
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 151 bits (381), Expect = 2e-35
Identities = 84/274 (30%), Positives = 139/274 (50%), Gaps = 1/274 (0%)
Query: 718 KQQVIQQQTTELLRAGIIREVKYTTWLSNVVLVKKANGKWRMCVDYTDLNKACPKDPFPL 777
K Q + + + L++GIIRE K V+ V K G RM VDY LNK + +PL
Sbjct: 424 KMQAMNDEINQGLKSGIIRESKAIN-ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
Query: 778 PSIDALVDNSSGYEYLSLMDAYSGYNQIPMHRDDEEKTAFITDRGTYCYTMLPFGLKNAV 837
P I+ L+ G + +D S Y+ I + + DE K AF RG + Y ++P+G+ A
Sbjct: 483 PLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAP 542
Query: 838 ATYQRMMTRIFGDLMGKSVEVYIDDIIVKTPKGGDHAADLAVVFEQLKKHNMRLNPDKCT 897
A +Q + I G++ V Y+D+I++ + +H + V ++LK N+ +N KC
Sbjct: 543 AHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCE 602
Query: 898 FGVRSGKFLGYMLTNRGIELNPDKCQAIMNMKSPRTVKEVQQLAGRMAAIGRFLPKAALR 957
F KF+GY ++ +G + ++ K P+ KE++Q G + + +F+PK +
Sbjct: 603 FHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQL 662
Query: 958 ALPLYTLLKNGATFEWSAEADAAFTQLKEILSSP 991
PL LLK ++W+ A +K+ L SP
Sbjct: 663 THPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSP 696
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 151 bits (381), Expect = 2e-35
Identities = 84/274 (30%), Positives = 139/274 (50%), Gaps = 1/274 (0%)
Query: 718 KQQVIQQQTTELLRAGIIREVKYTTWLSNVVLVKKANGKWRMCVDYTDLNKACPKDPFPL 777
K Q + + + L++GIIRE K V+ V K G RM VDY LNK + +PL
Sbjct: 424 KMQAMNDEINQGLKSGIIRESKAIN-ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
Query: 778 PSIDALVDNSSGYEYLSLMDAYSGYNQIPMHRDDEEKTAFITDRGTYCYTMLPFGLKNAV 837
P I+ L+ G + +D S Y+ I + + DE K AF RG + Y ++P+G+ A
Sbjct: 483 PLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAP 542
Query: 838 ATYQRMMTRIFGDLMGKSVEVYIDDIIVKTPKGGDHAADLAVVFEQLKKHNMRLNPDKCT 897
A +Q + I G++ V Y+D+I++ + +H + V ++LK N+ +N KC
Sbjct: 543 AHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCE 602
Query: 898 FGVRSGKFLGYMLTNRGIELNPDKCQAIMNMKSPRTVKEVQQLAGRMAAIGRFLPKAALR 957
F KF+GY ++ +G + ++ K P+ KE++Q G + + +F+PK +
Sbjct: 603 FHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQL 662
Query: 958 ALPLYTLLKNGATFEWSAEADAAFTQLKEILSSP 991
PL LLK ++W+ A +K+ L SP
Sbjct: 663 THPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSP 696
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 150 bits (380), Expect = 2e-35
Identities = 96/265 (36%), Positives = 143/265 (53%), Gaps = 4/265 (1%)
Query: 706 PVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVK--YTTWLSNVVLVKKANGK--WRMCV 761
P+ K + +++Q ELL+ GIIR Y + + V K NG+ +RM V
Sbjct: 123 PIYAKSYPYPVNMRGEVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVV 182
Query: 762 DYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAYSGYNQIPMHRDDEEKTAFITDR 821
D+ LN D +P+P I+A + + +Y + +D SG++QI M D KTAF T
Sbjct: 183 DFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLN 242
Query: 822 GTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYIDDIIVKTPKGGDHAADLAVVF 881
G Y + LPFGLKNA A +QRM+ I + +GK VYIDDIIV + H +L +V
Sbjct: 243 GKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVL 302
Query: 882 EQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPDKCQAIMNMKSPRTVKEVQQLA 941
L K N+++N +K F +FLGY++T GI+ +P K +AI M P +VKE+++
Sbjct: 303 ASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFL 362
Query: 942 GRMAAIGRFLPKAALRALPLYTLLK 966
G + +F+ A A PL L +
Sbjct: 363 GMTSYYRKFIQDYAKVAKPLTNLTR 387
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 139 bits (351), Expect = 5e-32
Identities = 96/347 (27%), Positives = 171/347 (48%), Gaps = 19/347 (5%)
Query: 660 LPRDLSKRMEKLLLSNGKLFAWSSEDMPGIDPAFCSHRLSVDRKYKPVAQKKRQMSAEKQ 719
+P + K + ++ K F+ ++E +P + A + +VD + PV +
Sbjct: 138 VPDSVKKEFKDTIIRRKKAFSTTNEALP-FNTAVTATIRTVDNE--PVYSRAYPTLMGVS 194
Query: 720 QVIQQQTTELLRAGIIREVKYTTWLSNVVLVKKA-----NGKWRMCVDYTDLNKACPKDP 774
+ + +LL+ GIIR + V+ KK N R+ +D+ LN+ D
Sbjct: 195 DFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDR 254
Query: 775 FPLPSIDALVDNSSGYEYLSLMDAYSGYNQIPMHRDDEEKTAFITDRGTYCYTMLPFGLK 834
+P+PSI ++ N ++ + +D SGY+QI + D EKT+F + G Y + LPFGL+
Sbjct: 255 YPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLR 314
Query: 835 NAVATYQRMMTRIFGDLMGKSVEVYIDDIIVKTPKGGDHAADLAVVFEQLKKHNMRLNPD 894
NA + +QR + + + +GK VY+DD+I+ + DH + V + L NMR++ +
Sbjct: 315 NASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQE 374
Query: 895 KCTFGVRSGKFLGYMLTNRGIELNPDKCQAIMNMKSPRTVKEVQQLAGRMAAIGRFLPKA 954
K F S ++LG++++ G + +P+K +AI P V +V+ G + F+
Sbjct: 375 KTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDF 434
Query: 955 ALRALPLYTLLK--NGAT---------FEWSAEADAAFTQLKEILSS 990
A A P+ +LK NG+ E++ AF +L+ IL+S
Sbjct: 435 AAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILAS 481
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 116 bits (291), Expect = 5e-25
Identities = 71/249 (28%), Positives = 125/249 (49%), Gaps = 7/249 (2%)
Query: 706 PVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVKYTTWLSNVVLVKK-ANGKWRMCVDY- 763
PV ++ R + + ++ + L G+I + Y W + +V++KK GK R+C D+
Sbjct: 440 PVFKRARPVPYGSLEAVETELNRLQEMGVIVPITYAKWAAPIVVIKKKGTGKIRVCADFK 499
Query: 764 -TDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAYSGYNQIPMHRDDEEKTAFITDRG 822
+ LN A + PLP+ + + G Y S +D Y Q+ + + ++ T RG
Sbjct: 500 CSGLNAALKDEFHPLPTSEDIFSRLKGTVY-SQIDLKDAYLQVELDEEAQKLAVINTHRG 558
Query: 823 TYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYIDDIIVKTPKGGDHAADLAVVFE 882
+ Y + FGLK A A++Q++M ++ L G V VY DDII+ +H L +FE
Sbjct: 559 IFKYLRMTFGLKPAPASFQKIMDKMVSGLTG--VAVYWDDIIISASSIEEHEKILRELFE 616
Query: 883 QLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPDKCQAIMNMKSPRTVKEVQQLAG 942
+ K++ R++ +KC F + FLG+ + G + K +AI +MK+P K++ G
Sbjct: 617 RFKEYGFRVSAEKCAFAQKQVTFLGF-VDEHGRRPDSKKTEAIRSMKAPTDQKQLASFLG 675
Query: 943 RMAAIGRFL 951
+ R +
Sbjct: 676 AADWLSRMM 684
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 105 bits (262), Expect = 1e-21
Identities = 87/348 (25%), Positives = 160/348 (45%), Gaps = 17/348 (4%)
Query: 648 PLPENTTNLAR--GLPRDLSKRMEKLLLSNGKLFA-WSSE-DMPGIDPAFCSHRLSVDRK 703
PL E L + LP++ + ++KL L L+ W ++ I P H ++
Sbjct: 117 PLHEYQERLLQQTALPKEQKELLQKLFLKYDALWQHWENQVGHRRIKP----HNIATGT- 171
Query: 704 YKPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVKYTTWLSNVVLVKKANGKWRMCVDY 763
P QK+ ++ + + IQ +LL+ G++ + + +T + V V K +GKWRM +DY
Sbjct: 172 LAPRPQKQYPINPKAKPSIQIVIDDLLKQGVLIQ-QNSTMNTPVYPVPKPDGKWRMVLDY 230
Query: 764 TDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAYSGYNQIPMHRDDEEKTAFITDRGT 823
++NK P ++ + +Y + +D +G+ P+ + TAF
Sbjct: 231 REVNKTIPLIAAQNQHSAGILSSIYRGKYKTTLDLTNGFWAHPITPESYWLTAFTWQGKQ 290
Query: 824 YCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYIDDIIVKTPKGGDHAADLAVVFEQ 883
YC+T LP G N+ A + + + ++ +V+ Y+DDI + +H L +F
Sbjct: 291 YCWTRLPQGFLNSPALFTADVVDLLKEI--PNVQAYVDDIYISHDDPQEHLEQLEKIFSI 348
Query: 884 LKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPDKCQAIMNMKSPRTVKEVQQLAGR 943
L ++ K R +FLG+ +T G L Q ++N+ P+ +K++Q + G
Sbjct: 349 LLNAGYVVSLKKSEIAQREVEFLGFNITKEGRGLTDTFKQKLLNITPPKDLKQLQSILGL 408
Query: 944 MAAIGRFLPKAALRALPLYTLL--KNGATFEWSAEADAAFTQLKEILS 989
+ F+P + PLYT++ NG W+ + QL+ I+S
Sbjct: 409 LNFARNFIPNYSELVKPLYTIVANANGKFISWTEDNS---NQLQHIIS 453
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 104 bits (260), Expect = 2e-21
Identities = 82/291 (28%), Positives = 138/291 (47%), Gaps = 11/291 (3%)
Query: 705 KPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVKYTTWLSNVVLV----KKANGKWRMC 760
K + K + S ++ +Q ELL +I+ K + ++ LV +K GK RM
Sbjct: 245 KAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSK-SPHMAPAFLVNNEAEKRRGKKRMV 303
Query: 761 VDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAYSGYNQIPMHRDDEEKTAFITD 820
V+Y +NKA D + LP+ D L+ G + S D SG+ Q+ + ++ TAF
Sbjct: 304 VNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCP 363
Query: 821 RGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYIDDIIVKTPKGGDHAADLAVV 880
+G Y + ++PFGLK A + +QR M F + K VY+DDI+V + DH +A++
Sbjct: 364 QGHYEWNVVPFGLKQAPSIFQRHMDEAF-RVFRKFCCVYVDDILVFSNNEEDHLLHVAMI 422
Query: 881 FEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPDKCQAIMNMKSPRTV---KEV 937
++ +H + L+ K + FLG + + G +N K P T+ K++
Sbjct: 423 LQKCNQHGIILSKKKAQLFKKKINFLGLEI-DEGTHKPQGHILEHIN-KFPDTLEDKKQL 480
Query: 938 QQLAGRMAAIGRFLPKAALRALPLYTLLKNGATFEWSAEADAAFTQLKEIL 988
Q+ G + ++PK A PL LK + W+ E ++K+ L
Sbjct: 481 QRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWRWTKEDTLYMQKVKKNL 531
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 104 bits (260), Expect = 2e-21
Identities = 82/291 (28%), Positives = 139/291 (47%), Gaps = 11/291 (3%)
Query: 705 KPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVKYTTWLSNVVLV----KKANGKWRMC 760
K + K + S ++ +Q ELL +I+ K + ++ LV +K GK RM
Sbjct: 245 KAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSK-SPHMAPAFLVNNEAEKRRGKKRMV 303
Query: 761 VDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAYSGYNQIPMHRDDEEKTAFITD 820
V+Y +NKA D + LP+ D L+ G + S D SG+ Q+ + ++ TAF
Sbjct: 304 VNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCP 363
Query: 821 RGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYIDDIIVKTPKGGDHAADLAVV 880
+G Y + ++PFGLK A + +QR M F + K VY+DDI+V + DH +A++
Sbjct: 364 QGHYEWNVVPFGLKQAPSIFQRHMDEAF-RVFRKFCCVYVDDILVFSNNEEDHLLHVAMI 422
Query: 881 FEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPDKCQAIMNMKSPRTV---KEV 937
++ +H + L+ K + FLG + + G +N K P T+ K++
Sbjct: 423 LQKCNQHGIILSKKKAQLFKKKINFLGLEI-DEGTHKPQGHILEHIN-KFPDTLEDKKQL 480
Query: 938 QQLAGRMAAIGRFLPKAALRALPLYTLLKNGATFEWSAEADAAFTQLKEIL 988
Q+ G + ++PK A PL LK ++W+ E ++K+ L
Sbjct: 481 QRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNL 531
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 104 bits (260), Expect = 2e-21
Identities = 82/291 (28%), Positives = 139/291 (47%), Gaps = 11/291 (3%)
Query: 705 KPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVKYTTWLSNVVLV----KKANGKWRMC 760
K + K + S ++ +Q ELL +I+ K + ++ LV +K GK RM
Sbjct: 245 KAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSK-SPHMAPAFLVNNEAEKRRGKKRMV 303
Query: 761 VDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAYSGYNQIPMHRDDEEKTAFITD 820
V+Y +NKA D + LP+ D L+ G + S D SG+ Q+ + ++ TAF
Sbjct: 304 VNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCP 363
Query: 821 RGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYIDDIIVKTPKGGDHAADLAVV 880
+G Y + ++PFGLK A + +QR M F + K VY+DDI+V + DH +A++
Sbjct: 364 QGHYEWNVVPFGLKQAPSIFQRHMDEAF-RVFRKFCCVYVDDILVFSNNEEDHLLHVAMI 422
Query: 881 FEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPDKCQAIMNMKSPRTV---KEV 937
++ +H + L+ K + FLG + + G +N K P T+ K++
Sbjct: 423 LQKCNQHGIILSKKKAQLFKKKINFLGLEI-DEGTHKPQGHILEHIN-KFPDTLEDKKQL 480
Query: 938 QQLAGRMAAIGRFLPKAALRALPLYTLLKNGATFEWSAEADAAFTQLKEIL 988
Q+ G + ++PK A PL LK ++W+ E ++K+ L
Sbjct: 481 QRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNL 531
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 674
Score = 102 bits (254), Expect = 9e-21
Identities = 81/291 (27%), Positives = 138/291 (46%), Gaps = 11/291 (3%)
Query: 705 KPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVKYTTWLSNVVLV----KKANGKWRMC 760
K + K + S ++ +Q ELL +I+ K + ++ LV +K GK RM
Sbjct: 240 KAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSK-SPHMAPAFLVNNEAEKRRGKKRMV 298
Query: 761 VDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAYSGYNQIPMHRDDEEKTAFITD 820
V+Y +NKA D + P+ D L+ G + S D SG+ Q+ + ++ TAF
Sbjct: 299 VNYKAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCP 358
Query: 821 RGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYIDDIIVKTPKGGDHAADLAVV 880
+G Y + ++PFGLK A + +QR M F + K VY+DDI+V + DH +A++
Sbjct: 359 QGHYEWNVVPFGLKQAPSIFQRHMDEAF-RVFRKFCCVYVDDILVFSNNEEDHLLHVAMI 417
Query: 881 FEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPDKCQAIMNMKSPRTV---KEV 937
++ +H + L+ K + FLG + + G +N K P T+ K++
Sbjct: 418 LQKCNQHGIILSKKKAQLFKKKINFLGLEI-DEGTHKPQGHILEHIN-KFPDTLEDKKQL 475
Query: 938 QQLAGRMAAIGRFLPKAALRALPLYTLLKNGATFEWSAEADAAFTQLKEIL 988
Q+ G + ++PK A PL LK ++W+ E ++K+ L
Sbjct: 476 QRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNL 526
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 680
Score = 100 bits (250), Expect = 3e-20
Identities = 79/291 (27%), Positives = 136/291 (46%), Gaps = 11/291 (3%)
Query: 705 KPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVKYTTWLSNVVLV----KKANGKWRMC 760
K + K + S ++ +Q ELL +I+ K + ++ LV + G RM
Sbjct: 246 KAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSK-SPHMAPAFLVNNEAENGRGNKRMV 304
Query: 761 VDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAYSGYNQIPMHRDDEEKTAFITD 820
V+Y +NKA D + LP+ D L+ G + S D SG+ Q+ + ++ TAF
Sbjct: 305 VNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCP 364
Query: 821 RGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYIDDIIVKTPKGGDHAADLAVV 880
+G Y + ++PFGLK A + +QR M F + K VY+DDI+V + DH +A++
Sbjct: 365 QGHYEWNVVPFGLKQAPSIFQRHMDEAF-RVFRKFCCVYVDDIVVFSNNEEDHLLHVAMI 423
Query: 881 FEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPDKCQAIMNMKSPRTV---KEV 937
++ +H + L+ K + FLG + + G +N K P T+ K++
Sbjct: 424 LQKCNQHGIILSKKKAQLFKKKINFLGLEI-DEGTHKPQGHILEHIN-KFPDTLEDKKQL 481
Query: 938 QQLAGRMAAIGRFLPKAALRALPLYTLLKNGATFEWSAEADAAFTQLKEIL 988
Q+ G + ++P A PL LK ++W+ E ++K+ L
Sbjct: 482 QRFLGILTYASDYIPNLAQMRQPLQAKLKENVPWKWTKEDTLYMQKVKKNL 532
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 99.8 bits (247), Expect = 6e-20
Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 4/243 (1%)
Query: 750 VKKANGKWRMCVDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAYSGYNQIPMHR 809
V K +G+WRM +DY ++NK P ++ +Y + +D +G+ P+
Sbjct: 8 VPKPDGRWRMVLDYREVNKTIPLTAAQNQHSAGILATIVRQKYKTTLDLANGFWAHPITP 67
Query: 810 DDEEKTAFITDRGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYIDDIIVKTPK 869
+ TAF YC+T LP G N+ A + + + ++ +V+VY+DDI +
Sbjct: 68 ESYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADVVDLLKEI--PNVQVYVDDIYLSHDD 125
Query: 870 GGDHAADLAVVFEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPDKCQAIMNMK 929
+H L VF+ L + ++ K G ++ +FLG+ +T G L ++N+
Sbjct: 126 PKEHVQQLEKVFQILLQAGYVVSLKKSEIGQKTVEFLGFNITKEGRGLTDTFKTKLLNIT 185
Query: 930 SPRTVKEVQQLAGRMAAIGRFLPKAALRALPLYTLLKN--GATFEWSAEADAAFTQLKEI 987
P+ +K++Q + G + F+P A PLY L+ + G EWS E + E
Sbjct: 186 PPKDLKQLQSILGLLNFARNFIPNFAELVQPLYNLIASAKGKYIEWSEENTKQLNMVIEA 245
Query: 988 LSS 990
L++
Sbjct: 246 LNT 248
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1189
Score = 98.6 bits (244), Expect = 1e-19
Identities = 88/334 (26%), Positives = 143/334 (42%), Gaps = 24/334 (7%)
Query: 680 AWSSEDMPGIDPAFCSHRLSVDRKYK--PVAQKKRQMSAEKQQVIQQQTTELLRAGIIRE 737
AW+ + G+ A C + +D K PV+ K+ MS E I+Q + L G++R
Sbjct: 150 AWA--ETGGLGRAKCQAPIIIDLKPTAVPVSIKQYPMSLEAHMGIRQHIIKFLELGVLRP 207
Query: 738 VKYTTWLSNVVLVKKANGK-WRMCVDYTDLNKAC----PKDPFPLPSIDALVDNSSGYEY 792
+ + W + ++ VKK + +R D ++NK P P P + L + S Y
Sbjct: 208 CR-SPWNTPLLPVKKPGTQDYRPVQDLREINKRTVDIHPTVPNPYNLLSTLKPDYSWYTV 266
Query: 793 LSLMDAYSGYNQIPMHRDDEEKTAFITD------RGTYCYTMLPFGLKNAVATYQRMMTR 846
L L DA+ +P+ +E AF G +T LP G KN+ + + R
Sbjct: 267 LDLKDAFFC---LPLAPQSQELFAFEWKDPERGISGQLTWTRLPQGFKNSPTLFDEALHR 323
Query: 847 IFGDLMGKSVEV----YIDDIIVKTPKGGDHAADLAVVFEQLKKHNMRLNPDKCTFGVRS 902
D + EV Y+DD+++ P + ++L + R + K
Sbjct: 324 DLTDFRTQHPEVTLLQYVDDLLLAAPTKKACTQGTRHLLQELGEKGYRASAKKAQICQTK 383
Query: 903 GKFLGYMLTNRGIELNPDKCQAIMNMKSPRTVKEVQQLAGRMAAIGRFLPKAALRALPLY 962
+LGY+L+ L P + + + + PR +EV++ G ++P A A PLY
Sbjct: 384 VTYLGYILSEGKRWLTPGRIETVARIPPPRNPREVREFLGTAGFCRLWIPGFAELAAPLY 443
Query: 963 TLLKNGATFEWSAEADAAFTQLKE-ILSSPLFWL 995
L K F W E AF LK+ +LS+P L
Sbjct: 444 ALTKESTPFTWQTEHQLAFEALKKALLSAPALGL 477
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 98.2 bits (243), Expect = 2e-19
Identities = 70/287 (24%), Positives = 131/287 (45%), Gaps = 5/287 (1%)
Query: 706 PVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVKYTTWLSNVVLVKKANGKWRMCVDYTD 765
P QK+ ++ + + IQ +LL+ G++ + + + + V V K +GKWRM +DY +
Sbjct: 176 PRPQKQYPINPKAKASIQTVINDLLKQGVLIQ-QNSIMNTPVYPVPKPDGKWRMVLDYRE 234
Query: 766 LNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAYSGYNQIPMHRDDEEKTAFITDRGTYC 825
+NK P ++ + +Y + +D +G+ + + TAF YC
Sbjct: 235 VNKTIPLIAAQNQHSAGILSSIFRGKYKTTLDLSNGFWAHSITPESYWLTAFTWLGQQYC 294
Query: 826 YTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYIDDIIVKTPKGGDHAADLAVVFEQLK 885
+T LP G N+ A + + + ++ +V+VY+DDI + +H L VF L
Sbjct: 295 WTRLPQGFLNSPALFTADVVDLLKEV--PNVQVYVDDIYISHDDPREHLEQLEKVFSLLL 352
Query: 886 KHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPDKCQAIMNMKSPRTVKEVQQLAGRMA 945
++ K +FLG+ +T G L Q ++N+ PR +K++Q + G +
Sbjct: 353 NAGYVVSLKKSEIAQHEVEFLGFNITKEGRGLTETFKQKLLNITPPRDLKQLQSILGLLN 412
Query: 946 AIGRFLPKAALRALPLYTLL--KNGATFEWSAEADAAFTQLKEILSS 990
F+P + PLY ++ NG W+ + + +L+S
Sbjct: 413 FARNFIPNFSELVKPLYNIIATANGKYITWTTDNSQQLQNIISMLNS 459
>POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 1046
Score = 96.3 bits (238), Expect = 6e-19
Identities = 87/334 (26%), Positives = 143/334 (42%), Gaps = 24/334 (7%)
Query: 680 AWSSEDMPGIDPAFCSHRLSVDRK--YKPVAQKKRQMSAEKQQVIQQQTTELLRAGIIRE 737
AW+ + G+ A C + +D K PV+ ++ MS E IQ T L G++R
Sbjct: 7 AWA--ETGGLGRAKCQVPIIIDLKPTAMPVSIRQYPMSKEAHMGIQPHITRFLELGVLRP 64
Query: 738 VKYTTWLSNVVLVKKANGK-WRMCVDYTDLNKAC----PKDPFPLPSIDALVDNSSGYEY 792
+ + W + ++ VKK + +R D ++NK P P P + L + + Y
Sbjct: 65 CR-SPWNTPLLPVKKPGTRDYRPVQDLREVNKRTMDIHPTVPNPYNLLSTLSPDRTWYTV 123
Query: 793 LSLMDAYSGYNQIPMHRDDEEKTAFITD------RGTYCYTMLPFGLKNAVATYQRMMTR 846
L L DA+ +P+ +E AF G +T LP G KN+ + + R
Sbjct: 124 LDLKDAFFC---LPLAPQSQELFAFEWRDPERGISGQLTWTRLPQGFKNSPTLFDEALHR 180
Query: 847 IFGDLMGKSVEV----YIDDIIVKTPKGGDHAADLAVVFEQLKKHNMRLNPDKCTFGVRS 902
D + EV Y+DD+++ P + +L R + K
Sbjct: 181 DLTDFRTQHPEVTLLQYVDDLLLAAPTKEACIRGTKHLLRELGDKGYRASAKKAQICQTK 240
Query: 903 GKFLGYMLTNRGIELNPDKCQAIMNMKSPRTVKEVQQLAGRMAAIGRFLPKAALRALPLY 962
+LGY+L+ L P + + + ++ P+ +EV++ G ++P A A PLY
Sbjct: 241 VTYLGYILSEGKRWLTPGRIETVAHIPPPQNPREVREFLGTAGFCRLWIPGFAELAAPLY 300
Query: 963 TLLKNGATFEWSAEADAAFTQLKE-ILSSPLFWL 995
L K A F W + +AF LKE +LS+P L
Sbjct: 301 ALTKESAPFTWQEKHQSAFEALKEALLSAPALGL 334
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.325 0.138 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,833,181
Number of Sequences: 164201
Number of extensions: 9344056
Number of successful extensions: 40834
Number of sequences better than 10.0: 355
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 256
Number of HSP's that attempted gapping in prelim test: 37973
Number of HSP's gapped (non-prelim): 1736
length of query: 1706
length of database: 59,974,054
effective HSP length: 124
effective length of query: 1582
effective length of database: 39,613,130
effective search space: 62667971660
effective search space used: 62667971660
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 73 (32.7 bits)
Lotus: description of TM0059.7