BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0369a.2
(1602 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO73527.1| gag-pol polyprotein [Glycine max] 137 2e-30
gb|AAC64917.1| gag-pol polyprotein [Glycine max] 137 4e-30
gb|AAP51907.1| putative gag-pol polyprotein [Oryza sativa (japon... 135 1e-29
gb|AAO73521.1| gag-pol polyprotein [Glycine max] 134 2e-29
gb|AAO73523.1| gag-pol polyprotein [Glycine max] 134 3e-29
ref|XP_468615.1| putative copia-type pol polyprotein [Oryza sati... 134 3e-29
ref|XP_469477.1| putative gag-pol polyprotein [Oryza sativa] gi|... 134 3e-29
gb|AAT85130.1| putative polyprotein [Oryza sativa (japonica cult... 132 7e-29
gb|AAK52148.1| putative gag-pol polyprotein, 3'-partial [Oryza s... 131 2e-28
gb|AAO73529.1| gag-pol polyprotein [Glycine max] 131 2e-28
gb|AAC18777.1| gag-protease polyprotein [Glycine max] gi|7488678... 131 2e-28
emb|CAB77910.1| putative transposon protein [Arabidopsis thalian... 131 2e-28
emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar... 131 2e-28
gb|AAP53179.1| putative retroelement [Oryza sativa (japonica cul... 130 3e-28
gb|AAK92658.1| Putative retroelement [Oryza sativa] 130 3e-28
ref|NP_909542.1| putative copia-type retrotransposon protein [Or... 129 8e-28
emb|CAE02142.1| OSJNBa0069D17.3 [Oryza sativa (japonica cultivar... 129 8e-28
gb|AAO73525.1| gag-pol polyprotein [Glycine max] 129 1e-27
gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cult... 129 1e-27
gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza s... 127 3e-27
>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 137 bits (346), Expect = 2e-30
Identities = 117/445 (26%), Positives = 199/445 (44%), Gaps = 54/445 (12%)
Query: 3 SFFLGFDADLWDIIVDGYERP--VDTDGKKI----PRSEMTADQKKLYSQHHKARAILLS 56
+F D+ W ++ G+E P +DT+GK P + T ++ +L + KA L +
Sbjct: 30 AFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNALFN 89
Query: 57 AISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMF 116
+ ++ I AK ++ LK++HEG KVK S+ L K+E+ M+ E I +
Sbjct: 90 GVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFH 149
Query: 117 SRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISILK 176
+ L + T + V +I+R LP+ + VT+IE +D+ NM ++ELI L+
Sbjct: 150 MNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQ 209
Query: 177 CHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRL 236
EL S+ + K K++A S E EE+E + +++ + + L+ K+
Sbjct: 210 TFELGLSDRAEKKSKNLAFVSNDE-----------GEEDEYDLDTDEGLTNAVVLLGKQF 258
Query: 237 NRIWKHRQSKFKG-------SGRAKGKYES-SGQKKSSIKEVTCFECKESGHYKSDCPKL 288
N++ + K R KY+ S K S K + C C+ GH ++CP
Sbjct: 259 NKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKGIQCHGCEGYGHIIAECPTH 318
Query: 289 KKDKKPKKHFKTKKSLMVTFDESESE-DVDSDGEVQGLMAIVKDKGAESKEAVDSDSESE 347
K K +K L V ++ESE + DSD +V L I + ++++ D+DSE
Sbjct: 319 LK--------KHRKGLSVCQSDTESEQESDSDRDVNALTGIFE----TAEDSSDTDSEIT 366
Query: 348 GDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKIIS 407
D EL + + K +L +LKK ++ + HE+ IS
Sbjct: 367 FD----------------ELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHEEEIS 410
Query: 408 DLKNENHALVNSNSVLKNQIAKLEE 432
+LK E L + +K I L +
Sbjct: 411 ELKGEVGFLNSKLETMKKSIKMLNK 435
>gb|AAC64917.1| gag-pol polyprotein [Glycine max]
Length = 1550
Score = 137 bits (344), Expect = 4e-30
Identities = 120/445 (26%), Positives = 201/445 (44%), Gaps = 58/445 (13%)
Query: 3 SFFLGFDADLWDIIVDGYERP--VDTDGKKI----PRSEMTADQKKLYSQHHKARAILLS 56
+F D+ W ++ G+E P +DT+GK P + T ++ +L + KA L +
Sbjct: 3 AFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNALFN 62
Query: 57 AISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMF 116
+ ++ I AK ++ LK +HEG KVK S+ L K+E+ M+ E I E
Sbjct: 63 GVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHEFH 122
Query: 117 SRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISILK 176
+ L + T + V +I+R LP+ + VT+IE +D+ NM ++ELI L+
Sbjct: 123 MNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQ 182
Query: 177 CHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRL 236
EL S+ + K K++A S E EE+E + +++ + + L+ K+
Sbjct: 183 TFELGLSDRTEKKSKNLAFVSNDE-----------GEEDEYDLDTDEGLTNAVVLLGKQF 231
Query: 237 NRIWKHRQSKFKGSGR------AKGK--YESSGQKKSSIKEVTCFECKESGHYKSDCPKL 288
N++ + K R KG + S +K S K + C C+ GH K++CP
Sbjct: 232 NKVLNRMDRRQKPHVRNIPFDIRKGSEYQKRSDEKPSHSKGIQCHGCEGYGHIKAECPTH 291
Query: 289 KKDKKPKKHFKTKKSLMV-TFDESESE-DVDSDGEVQGLMAIVKDKGAESKEAVDSDSES 346
K K +K L V D++ESE + DSD +V L + ++++ D+DSE
Sbjct: 292 LK--------KQRKGLSVCRSDDTESEQESDSDRDVNALTG----RFESAEDSSDTDSEI 339
Query: 347 EGDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKII 406
D EL + ++ K +L +LKK ++ + HE I
Sbjct: 340 TFD----------------ELAISYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEDEI 383
Query: 407 SDLKNENHALVNSNSVLKNQIAKLE 431
S+LK E L NS L+N ++
Sbjct: 384 SELKGEIGFL---NSKLENMTKSIK 405
>gb|AAP51907.1| putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530636|ref|NP_919620.1| putative
gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|20042890|gb|AAM08718.1| Putative
gag-pol polyprotein [Oryza sativa]
Length = 1627
Score = 135 bits (340), Expect = 1e-29
Identities = 117/441 (26%), Positives = 205/441 (45%), Gaps = 81/441 (18%)
Query: 49 KARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEP 108
+A L ++ S EE+ ++++ E A I++ L HEG + K++K L +YE+F M P
Sbjct: 65 QAMNALFNSFSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETFSMLP 124
Query: 109 NESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSL 168
+ES+ +M+ R ++V ++ L +YT + +++R LP+ + LVT + + D+ M+
Sbjct: 125 HESVNDMYGRLNVIVNDLKGLGATYTDLEVAQKMLRALPKKYETLVTML-INSDMSRMTP 183
Query: 169 EELISILKCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEES-----EEASED 223
L+ ++ ++M LKKK + S S+K ALQAE E+ EA++D
Sbjct: 184 ASLLG-----KINTNDMYKLKKKEMEEASPSKKC-----IALQAEVEDKGKSKVNEANDD 233
Query: 224 SDEDELTLISKRLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKS 283
E E+ L+++R N + R+ + +GS + + + S+++ CFEC E GH+ S
Sbjct: 234 LKE-EIALLARRFNDLLGRRKERVRGSNSNRRRNRRPNKTLSNLR---CFECGEKGHFAS 289
Query: 284 DCPKLKKD---------------KKPKKHFKTKKSLMVTFDESESEDVDSDGEVQG---- 324
CP D KK KK K ++ + +D +E S E +G
Sbjct: 290 KCPSKDDDGDKSSKKKSGGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSEEEGGDDA 349
Query: 325 -----LMAIVKDKG-----------AESKEAVDSDSESEGDPNSDD-------------- 354
MA+V K A+ V S S+SE D + DD
Sbjct: 350 SSKKKKMAVVVIKEAPTLFAPLCLMAKGSSKVTSLSDSESDDDCDDVSYDELVSMFEELH 409
Query: 355 ---ENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKIISDLKN 411
E E+ F ++ HA +++ Y L ++H++L + ++ + S I
Sbjct: 410 AYSEKEI-VKFKALKMDHASLEVL--YEELKTSHERLTISHKKLNSSSSSCVSIC----- 461
Query: 412 ENHALVNSNSVLKNQIAKLEE 432
+ +LV N+ LK Q+AKL +
Sbjct: 462 -DASLVVENNELKEQVAKLNK 481
>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
Length = 1574
Score = 134 bits (338), Expect = 2e-29
Identities = 117/444 (26%), Positives = 200/444 (44%), Gaps = 57/444 (12%)
Query: 3 SFFLGFDADLWDIIVDGYERP--VDTDGKKI----PRSEMTADQKKLYSQHHKARAILLS 56
+F D+ W ++ G+E P +DT+GK P + T ++ +L + KA L +
Sbjct: 30 AFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNALFN 89
Query: 57 AISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMF 116
+ ++ I AK ++ LK++HEG KVK S+ L K+E+ M+ E I +
Sbjct: 90 GVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKISRLQLLATKFENLKMKEEECIHDFH 149
Query: 117 SRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISILK 176
+ L + T + V +I+R LP+ + VT+IE +D+ NM ++ELI L+
Sbjct: 150 MNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQ 209
Query: 177 CHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRL 236
EL S+ + K K++A S E EE+E + +++ + + L+ K+
Sbjct: 210 TFELGLSDRAEKKSKNLAFVSNDE-----------GEEDEYDLNTDEGLTNAVVLLGKQF 258
Query: 237 NRIWKHRQSKFKG-------SGRAKGKYE-SSGQKKSSIKEVTCFECKESGHYKSDCPKL 288
N++ + K R KY+ S K S K + C C+ GH ++CP
Sbjct: 259 NKVLNRMDKRQKPHVQNIPFDIRKGSKYQKKSDVKPSHSKGIQCHGCEGYGHIIAECPTH 318
Query: 289 KKDKKPKKHFKTKKSLMVTFDESESE-DVDSDGEVQGLMAIVKDKGAESKEAVDSDSESE 347
K K +K L V ++ESE + DSD +V L I + ++++ D+DSE
Sbjct: 319 LK--------KHRKGLSVCQSDTESEQESDSDRDVNALTGIFE----TAEDSSDTDSEIT 366
Query: 348 GDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKIIS 407
D EL + + K +L +LKK ++ + H++ IS
Sbjct: 367 FD----------------ELATSYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEEIS 410
Query: 408 DLKNENHALVNSNSVLKNQIAKLE 431
+LK E L NS L+N ++
Sbjct: 411 ELKGEVGFL---NSKLENMTKSIK 431
>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 134 bits (336), Expect = 3e-29
Identities = 117/444 (26%), Positives = 199/444 (44%), Gaps = 57/444 (12%)
Query: 3 SFFLGFDADLWDIIVDGYERP--VDTDGKKI----PRSEMTADQKKLYSQHHKARAILLS 56
+F D+ W ++ G+E P +DT+GK P + T ++ +L + KA L +
Sbjct: 30 AFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNALFN 89
Query: 57 AISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMF 116
+ ++ I AK + LK +HEG KVK S+ L K+E+ M+ E I +
Sbjct: 90 GVDKNIFRLINTCTVAKDACEILKSTHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFH 149
Query: 117 SRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISILK 176
+ L + T + V +I+R LP+ + VT+IE +D+ NM ++ELI L+
Sbjct: 150 MNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQ 209
Query: 177 CHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRL 236
EL S+ + K K++A S E EE+E + +++ + + L+ K+
Sbjct: 210 TFELGLSDRAEKKSKNLAFVSNDE-----------GEEDEYDLDTDEGLTNAVVLLGKQF 258
Query: 237 NRIWKHRQSKFKG-------SGRAKGKYES-SGQKKSSIKEVTCFECKESGHYKSDCPKL 288
N++ + K R KY+ S K S K + C C+ GH ++CP
Sbjct: 259 NKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKGIQCHGCEGYGHIIAECPTH 318
Query: 289 KKDKKPKKHFKTKKSLMVTFDESESE-DVDSDGEVQGLMAIVKDKGAESKEAVDSDSESE 347
K K +K L V ++ESE + DSD +V L+ I + ++++ D+DSE
Sbjct: 319 LK--------KHRKGLSVCQSDTESEQESDSDRDVNALIGIFE----TAEDSSDTDSEIT 366
Query: 348 GDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKIIS 407
D EL + + K +L +LKK ++ + H++ IS
Sbjct: 367 FD----------------ELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEEIS 410
Query: 408 DLKNENHALVNSNSVLKNQIAKLE 431
+LK E L NS L+N ++
Sbjct: 411 ELKGEVGFL---NSKLENMTKSIK 431
>ref|XP_468615.1| putative copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|30017555|gb|AAP12977.1| putative
copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1896
Score = 134 bits (336), Expect = 3e-29
Identities = 124/488 (25%), Positives = 228/488 (46%), Gaps = 90/488 (18%)
Query: 12 LWDIIVDGYERPVDTDGKKIPRSEMTADQKKLYSQHHKARAILLSAISYEEYQKITDREF 71
+W ++ G + P D E+T++Q++L ++ + +LSA+S EE+ K+ E
Sbjct: 77 IWKVVCTGIDVPHDD-------MELTSEQEQLIHRNDQVSNAILSALSPEEFNKVDRLEE 129
Query: 72 AKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLNK 131
AK I+D+L+++HEG+ V+E+K L + F+M+ E+ +EM+ R +LV I+ L
Sbjct: 130 AKAIWDTLQLAHEGSPAVREAKIELLEGRLGRFVMDDKETPQEMYDRMMILVNKIKGLGS 189
Query: 132 SYTTKDHVI-RIIRCLPESWMPLVTSIELTRDVENMSLEELISILKCHELKRSEMQDLKK 190
T V+ R++R LV+ I +D + ++ +++ + HE++ E +++++
Sbjct: 190 EDMTNHFVVKRLLRAFGPRNPTLVSMIHERKDFKRLTPSDILGRIVSHEMQEEEAREVRQ 249
Query: 191 --KSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRLNRIWKHRQSKFK 248
K+ A+ E AL+A++EE E + E+S ++E+ LI KR +KH +
Sbjct: 250 MVKNAAMIKNQE-------VALKAKQEE-ESSCEESKDEEMALIVKR----FKH---FLR 294
Query: 249 GSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKLKK------DKKPK-KHFKTK 301
SG K + + K+ S + CF C E GH+ +DCPK + KKP+ H
Sbjct: 295 RSGYGKERKDDDKGKRQSKR--ACFNCGEYGHFIADCPKTNEAKGKGGKKKPECAHVAEA 352
Query: 302 KSLMVTFDESE-------SEDVDSDGEVQGLMAIVKDKGAESKEAV----------DSDS 344
V + E E + V+ +G G+ + + SKE + D+D
Sbjct: 353 HMAEVWYSEDEEDPKPKPKDKVEGEG---GVATVAFKSSSSSKERLFMAQGHNLSDDNDD 409
Query: 345 E---------------------SEGDPNSDDE-----NEVFASFSTSELKH--ALSDIMD 376
S D +SD+E ++V SFS ++H L +D
Sbjct: 410 SYHYSCFMAQGRKVMTQKLSHTSLNDDSSDEESDNELDDVLKSFSKPAMQHLAKLMRALD 469
Query: 377 KYNSLLSTHKKL-----KKNLS---AVSKTPSEHEKIISDLKNENHALVNSNSVLKNQIA 428
L ++L K+NL+ +++K +++E++ +DL N +L + V +N
Sbjct: 470 SKEQSLERQEELLILEKKRNLALEESLAKECAKNEQLANDLNLANGSLASLRDVNENLQE 529
Query: 429 KLEEIVAC 436
K + C
Sbjct: 530 KFANLDKC 537
>ref|XP_469477.1| putative gag-pol polyprotein [Oryza sativa]
gi|13937301|gb|AAK50132.1| putative gag-pol polyprotein
[Oryza sativa]
Length = 1700
Score = 134 bits (336), Expect = 3e-29
Identities = 108/418 (25%), Positives = 192/418 (45%), Gaps = 68/418 (16%)
Query: 49 KARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEP 108
+A L +++S EE+ ++++ E A I++ L HEG + K++K L +YE+F M P
Sbjct: 65 QAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETFSMLP 124
Query: 109 NESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSL 168
+ES+ +M+ R ++V ++ L +YT + +++R LPE + VT + + D+ M+
Sbjct: 125 HESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETFVTML-INSDMSRMTP 183
Query: 169 EELISILKCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDE 228
L+ ++ ++M LKKK I S S+K +++ + + E +ED E+E
Sbjct: 184 ASLLG-----KINTNDMYKLKKKEIEEASPSKKCIALQAEVEDQSKSKVNEVNEDL-EEE 237
Query: 229 LTLISKRLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKL 288
+ L+++R N + R+ + +GS + K + S+++ CFEC E GH+ S CP
Sbjct: 238 MVLLARRFNDLLGRRKERGRGSNSNRRKNRRPNKTLSNLR---CFECGEKGHFASKCPSK 294
Query: 289 KKD---------------KKPKKHFKTKKSLMVTFDESESEDVDSDGEVQG--------- 324
D KK KK K ++ + +D +E S E +G
Sbjct: 295 DDDGDKSSKKKSGGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSEEEGGDDASSKKK 354
Query: 325 LMAIVKDKGAES-----------KEAVDSDSESEGDPNSDD-----------------EN 356
MA+V K A S V S S+SE D + DD E
Sbjct: 355 KMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCDDVSYDELVSMFEELHTYSEK 414
Query: 357 EVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKIISDLKNENH 414
E+ F + HA +++ Y L +TH++L + K H+ ++S ++ H
Sbjct: 415 EI-VKFKALKKDHASLEVL--YEELKTTHERL---TISHEKLKEAHDNLLSTTQHGAH 466
>gb|AAT85130.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1362
Score = 132 bits (333), Expect = 7e-29
Identities = 121/487 (24%), Positives = 228/487 (45%), Gaps = 93/487 (19%)
Query: 12 LWDIIVDGYERPVDTDGKKIPRSEMTADQKKLYSQHHKARAILLSAISYEEYQKITDREF 71
+W ++ G + P D E+T++Q++L ++ +A +LSA+S EE+ K+ E
Sbjct: 78 IWKVVCTGVDVPHDD-------MELTSEQEQLIHRNAQASNAILSALSPEEFNKVDGLEE 130
Query: 72 AKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLNK 131
AK I+D+L+++HEG+ V+E+K L + F+M E+ +EM+ R +LV I+ L
Sbjct: 131 AKEIWDTLQLAHEGSPAVREAKIELLEGRLGRFVMGDKETPQEMYDRMMILVNKIKGLGS 190
Query: 132 SYTTKDHVI-RIIRCLPESWMPLVTSIELTRDVENMSLEELISILKCHELKRSEMQDLKK 190
T V+ R++R LV+ I +D + ++ +++ + HE++ E +++++
Sbjct: 191 EDMTNHFVVKRLLRAFGPRNPTLVSMIRERKDFKRLTPSDILGRIVSHEMQEEEAREVRQ 250
Query: 191 --KSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRLNRIWKHRQSKFK 248
K+ A+ E AL+A++EE E + E+S+++E+ I KR +KH K
Sbjct: 251 MVKNAAMIKNQE-------IALKAKQEE-ESSCEESEDEEMAFIVKR----FKHFLRK-- 296
Query: 249 GSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKLKK------DKKPKKHFKTKK 302
SG KG+ + K+ S + CF C E GH+ +DCPK + KKP++ +
Sbjct: 297 -SGYGKGRKDDDKGKRQSKR--ACFNCGEYGHFIADCPKSNEAKAKGGKKKPERAHVAEA 353
Query: 303 SLMVTFDESESED------------VDSDGEVQGLMAIVKDKGAESKEAV-----DSDSE 345
+ + + ED V+ +G G+ + + SKE + D D +
Sbjct: 354 HMAEVWYSRDEEDPEVKPKPKPKDKVEGEG---GVATVAFKSSSSSKERLFNNLSDDDDD 410
Query: 346 S--------------------------EGDPNSDDE-NEVFASFSTSELKH--------- 369
S D SD+E ++V SFS ++H
Sbjct: 411 SYHYSCFMAQGRKVMTQKPSHTSLDVDSSDEESDNELDDVLKSFSKPAMQHLAKLMRALY 470
Query: 370 ALSDIMDKYNSLLSTHKKLKKNL-SAVSKTPSEHEKIISDLKNENHALV---NSNSVLKN 425
+ +++ LL KK L +++K +++E++ ++L N +L + N L+
Sbjct: 471 SKEQSLERQEELLILEKKRNLALEESLAKECAKNEQLANELNLANGSLASLRDVNETLQE 530
Query: 426 QIAKLEE 432
+ A L++
Sbjct: 531 KFASLDK 537
>gb|AAK52148.1| putative gag-pol polyprotein, 3'-partial [Oryza sativa]
Length = 1074
Score = 131 bits (330), Expect = 2e-28
Identities = 120/479 (25%), Positives = 214/479 (44%), Gaps = 86/479 (17%)
Query: 12 LWDIIVDGY--ERPVDTDGKKIPRSEMTADQKKLYSQHHKARAILLSAISYEEYQKITDR 69
+W I+ GY ++P D P E ++ K + +A ++LSA+S E+ ++ D
Sbjct: 62 IWRIVEKGYVLQKPED------PTKEDDENEHK----NAQAANVILSALSGSEFNRVDDI 111
Query: 70 EFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPL 129
E AK I+D+L+ HEG V+ESK L ++E F+M ES +M+ +V I+ L
Sbjct: 112 ESAKVIWDTLRNLHEGTDSVRESKVEILKGQFERFVMLDGESPSDMYDHLSKIVNEIKGL 171
Query: 130 NKSYTTKDHVI-RIIRCLPESWMPLVTSIELTRDVENMSLEELISILKCHE--------- 179
T + V+ +++R + LVT I D + ++ +L+ + H+
Sbjct: 172 GSKDMTDEVVVKKMVRAITLRNSTLVTIIRERPDYKTLTPHDLLGRILAHDMLVQESKEV 231
Query: 180 ---LKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRL 236
+ +S +KK+ +ALK+K E+ + KSK + E+ D++E+TL K+
Sbjct: 232 IQYINQSSTTSIKKEDLALKAKEEEEESRKSK-----------SKEEIDDEEMTLFVKKF 280
Query: 237 NRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKL-------- 288
+ + R FKGS + SG+ + + C+ CKE GH+ +DCP L
Sbjct: 281 GKFMR-RSGFFKGSSSKHHSNKLSGRHSARV----CYVCKEPGHFIADCPYLKDGSHIKE 335
Query: 289 -----KKDKKPKKHFKTKK---------SLMVTFDESESEDVD----------------- 317
KKD+K +KH +K+ + + ES S D +
Sbjct: 336 DKMGEKKDEKKEKHKHSKRERYGQAHLGKIFGSDSESSSSDEEGIATFAVKPSSPPRLFN 395
Query: 318 --SDGEVQGLMAIVKDKGAESKEAVDSDSESEGDPNSDDE---NEVFASFSTSELKHALS 372
SD + + + K S ++ + D S+ + + +DE E+F S + L H LS
Sbjct: 396 YSSDEDAPICLMAKEPKVPSSLKSFNVDLVSDEEDDVEDEVMDEELFKSITKESLPH-LS 454
Query: 373 DIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKIISDLKNENHALVNSNSVLKNQIAKLE 431
+++ + +T ++ + L + E + ++ + +N ALV K A LE
Sbjct: 455 ELLGRIEDQYATLERQEALLIREKERSHELKGELAKEREKNEALVRLYKQTKESHANLE 513
>gb|AAO73529.1| gag-pol polyprotein [Glycine max]
Length = 1577
Score = 131 bits (330), Expect = 2e-28
Identities = 118/445 (26%), Positives = 198/445 (43%), Gaps = 58/445 (13%)
Query: 3 SFFLGFDADLWDIIVDGYERP--VDTDGKKI----PRSEMTADQKKLYSQHHKARAILLS 56
+F D+ W ++ G+E P +DT+GK P + T ++ +L + KA L +
Sbjct: 30 AFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNALFN 89
Query: 57 AISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMF 116
+ ++ I AK ++ LK +HEG KVK S+ L K+E+ M+ E I +
Sbjct: 90 GVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFH 149
Query: 117 SRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISILK 176
+ L + T + V +I+R LP+ + VT+IE +D+ NM ++ELI L+
Sbjct: 150 MTILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQ 209
Query: 177 CHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRL 236
EL S+ + K K++A S E EE+E + +++ + + + K+
Sbjct: 210 TFELGLSDRTEKKSKNLAFVSNDE-----------GEEDEYDLDTDEGLTNAVVFLGKQF 258
Query: 237 NRIWKHRQSKFKGSGR------AKGK--YESSGQKKSSIKEVTCFECKESGHYKSDCPKL 288
N++ + K R KG S +K S K + C C+ GH K++CP
Sbjct: 259 NKVLNRMDRRQKPHVRNISLDIRKGSEYQRKSDEKPSHSKGIQCRGCEGYGHIKAECPTH 318
Query: 289 KKDKKPKKHFKTKKSLMV-TFDESESE-DVDSDGEVQGLMAIVKDKGAESKEAVDSDSES 346
K K +K L V D++ESE + DSD +V L + ++++ D+DSE
Sbjct: 319 LK--------KQRKGLSVCRSDDTESEQESDSDRDVNALTG----RFESAEDSSDTDSEI 366
Query: 347 EGDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKII 406
D EL ++ K +L +LKK ++ + HE+ I
Sbjct: 367 TFD----------------ELAIFYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEEEI 410
Query: 407 SDLKNENHALVNSNSVLKNQIAKLE 431
S LK E L NS L+N ++
Sbjct: 411 SKLKGEVGFL---NSKLENMTKSIK 432
>gb|AAC18777.1| gag-protease polyprotein [Glycine max] gi|7488678|pir||T06419
gag-proteinase polyprotein - soybean retrovirus-like
element
Length = 640
Score = 131 bits (330), Expect = 2e-28
Identities = 117/445 (26%), Positives = 200/445 (44%), Gaps = 58/445 (13%)
Query: 3 SFFLGFDADLWDIIVDGYERP--VDTDGKKI----PRSEMTADQKKLYSQHHKARAILLS 56
+F D+ W ++ +E P +DT+GK P + T ++ +L + KA L +
Sbjct: 30 AFLKSLDSRTWKAVIKDWEHPKMLDTEGKPTDGLKPEEDWTKEEDELALGNSKALNALFN 89
Query: 57 AISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMF 116
+ ++ I AK ++ LK +HEG KVK S+ L K+E+ M+ E I +
Sbjct: 90 GVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFH 149
Query: 117 SRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISILK 176
+ L + T + V +I+R LP+ + VT+IE +D+ N+ ++ELI L+
Sbjct: 150 MNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNLRVDELIGSLQ 209
Query: 177 CHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRL 236
EL S+ + K K++A S E EE+E + +++ + + L+ K+
Sbjct: 210 TFELGLSDRTEKKSKNLAFVSNDE-----------GEEDEYDLDTDEGLTNAVVLLGKQF 258
Query: 237 NRIWKHRQSKFKGSGR------AKGK--YESSGQKKSSIKEVTCFECKESGHYKSDCPKL 288
N++ + K R KG + S +K S K C C+ GH K++CP
Sbjct: 259 NKVLNRMDRRQKPHVRNIPFDIRKGSEYQKRSDEKPSHSKGFQCHGCEGYGHIKAECPTH 318
Query: 289 KKDKKPKKHFKTKKSLMV-TFDESESE-DVDSDGEVQGLMAIVKDKGAESKEAVDSDSES 346
K K +K L V D++ESE + DSD +V L + ++++ D+DSE
Sbjct: 319 LK--------KQRKGLSVCRSDDTESEQESDSDRDVNALTG----RFESAEDSSDTDSEI 366
Query: 347 EGDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKII 406
D EL + ++ K +L +LKK ++ + HE+ I
Sbjct: 367 TFD----------------ELATSYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEEEI 410
Query: 407 SDLKNENHALVNSNSVLKNQIAKLE 431
S+LK E L NS L+N ++
Sbjct: 411 SELKGEVGFL---NSKLENMTKSIK 432
>emb|CAB77910.1| putative transposon protein [Arabidopsis thaliana]
gi|4773881|gb|AAD29754.1| putative transposon protein
[Arabidopsis thaliana] gi|25407270|pir||H85055 probable
transposon protein [imported] - Arabidopsis thaliana
Length = 1008
Score = 131 bits (329), Expect = 2e-28
Identities = 115/503 (22%), Positives = 228/503 (44%), Gaps = 66/503 (13%)
Query: 1 LESFFLGFDADLWDIIVDGYERPV--DTDGKKIPRSE---MTADQKKLYSQHHKARAILL 55
+ + G + W G++ PV DG+ + +++ A++ K + + +A +++
Sbjct: 28 MRALIRGLGKEAWIATSIGWKAPVIKGEDGEDVLKTKDQWNDAEEAKAKA-NSRALSLIF 86
Query: 56 SAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEM 115
+ ++ ++++I + E AK +D L ++EG VK S+ L ++E+ ME E+IEE
Sbjct: 87 NFVNQNQFKRIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLASQFENLSMEETENIEEF 146
Query: 116 FSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISIL 175
+ + + L K Y K V +++RCLP + T++ + D +++ EE++ +L
Sbjct: 147 SGKISAIASEAHNLGKKYKDKKLVKKLLRCLPSRFESKRTAMGTSLDTDSIDFEEVVGML 206
Query: 176 KCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKR 235
+ +EL+ + + K +AL + ++K ++++ K D +++++K
Sbjct: 207 QAYELEITSGKGGYSKGLALAASAKKNEIQELK------------------DTMSMMAKD 248
Query: 236 LNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKLK-KDKKP 294
+R + + K G + +Y K+ E+ C EC+ GH K++CP LK KD K
Sbjct: 249 FSRAMRRVEKKGFGRNQGTDRYRDRSSKRD---EIQCHECQGYGHIKAECPSLKRKDLKC 305
Query: 295 KK--------------HFKTKKSLMVTFDESESEDVDSDGEVQGLMAIV-----KDKGAE 335
+ K KS + ES+S D DS+ ++G ++ V KD+ ++
Sbjct: 306 SECNGLGHTKFDCVGSKSKPDKSCS-SESESDSNDGDSEDYIKGFVSFVGIIEEKDESSD 364
Query: 336 SKEAVDSDSESEGDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAV 395
S EA D ++ D +SD E +V +I +++ L + L K A
Sbjct: 365 S-EADGEDEDNSADEDSDIEKDV--------------NINEEFRKLYDSWLMLSKEKVAW 409
Query: 396 SKTPSEHEKIISDLKNENHALVNSNSVLKNQIAKLEE---IVACDASDCRNESKYEKSFQ 452
+ + +++ LK E A NS L + + EE ++ + SD R S
Sbjct: 410 LEEKLKVQELTEKLKGELTAANQKNSELIQKCSVAEEKNRELSQELSDTRKNIHMLNSGT 469
Query: 453 RFLAKSVDRSLMASMIYGVSRNG 475
+ L + + +G+ NG
Sbjct: 470 KDLDSILAAGRVGKSNFGLGYNG 492
>emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar-group)]
gi|50923031|ref|XP_471876.1| OSJNBa0063G07.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1539
Score = 131 bits (329), Expect = 2e-28
Identities = 115/433 (26%), Positives = 205/433 (46%), Gaps = 63/433 (14%)
Query: 49 KARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEP 108
+A L +++S EE+ ++++ E A I++ L HEG + K++K L +YE+F M P
Sbjct: 65 QAMNALFNSLSQEEFDRVSNLETAYEIWNKLAKIHEGTSEYKDAKLHFLKIQYETFSMLP 124
Query: 109 NESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSL 168
+ES+ +M+ R ++V ++ L +YT + +++R LPE + LVT + + D+ M+
Sbjct: 125 HESVNDMYGRLNVIVNDLKGLGANYTDLEVAKKMLRALPEKYETLVTML-INSDMSRMTP 183
Query: 169 EELISILKCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSD--E 226
L+ ++ ++M LKKK + S S+K ALQAE E+ + ++ + E
Sbjct: 184 ASLLG-----KINTNDMYKLKKKEMEEASPSKKC-----IALQAEVEDKGKVNDVNKNLE 233
Query: 227 DELTLISKRLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCP 286
+E+ L+++R N R+ + KGS + + + + S+++ CFEC E GH+ S CP
Sbjct: 234 EEIALLARRFNDFLGRRKERGKGSNSNRRRNKRPNKTLSNLR---CFECGEKGHFASKCP 290
Query: 287 KLKKD---------------KKPKKHFKTKKSLMVTFDESE---------SEDVDSDGEV 322
D KK KK K ++ + +D +E ED D
Sbjct: 291 SKDDDGDKSSKKKSGGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSKEEDGDDASSK 350
Query: 323 QGLMAIVKDKGA-------------ESKEAVDSDSESEGDPNSDDENEVFASFSTSELKH 369
+ MA+V K A SK SDSES+ D + +E+ + F E H
Sbjct: 351 KKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCDDISYDELVSMF---EELH 407
Query: 370 ALSD-IMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKIISDLKNENHALVNSNSVLKNQIA 428
A S+ + K+ +L H L+ + + HE++ + +E + N + Q
Sbjct: 408 AYSEKEIVKFKALKKDHASLE---VLYEELKTSHERL--TISHEKLKEAHDNLLSTTQHG 462
Query: 429 KLEEI-VACDASD 440
L ++ ++CD D
Sbjct: 463 ALIDVGISCDLLD 475
>gb|AAP53179.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533180|ref|NP_920892.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22748369|gb|AAN05371.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1299
Score = 130 bits (328), Expect = 3e-28
Identities = 110/403 (27%), Positives = 191/403 (47%), Gaps = 50/403 (12%)
Query: 49 KARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEP 108
+A L +++S EE+ ++++ E A I++ L HEG + K++K L +YE+F M P
Sbjct: 31 QAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETFSMLP 90
Query: 109 NESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSL 168
+ES+ +M+ R ++V ++ L +YT + +++R LPE + LVT + + D+ M+
Sbjct: 91 HESVNDMYGRLNVIVNDLKGLGANYTDLEIAQKMLRALPEKYETLVTML-INSDMSRMTP 149
Query: 169 EELISILKCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDE 228
L+ ++ ++M LKKK + S S+K +++ + + EA+ED E+E
Sbjct: 150 ASLLG-----KINTNDMYKLKKKEMEEASPSKKCIALQTEVEDKGKGKVNEANEDL-EEE 203
Query: 229 LTLISKRLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKL 288
+ L+++R N + ++ + +GS + + + S+++ CFEC E GH+ S CP
Sbjct: 204 IALLARRFNDLLGRKKERGRGSNSNRRRNRRPNKTLSNLR---CFECGEKGHFASKCPSK 260
Query: 289 KKD---------------KKPKKHFKTKKSLMVTFDESESEDVDSDGEVQG--------- 324
D KK KK K ++ + +D ++ S E +G
Sbjct: 261 DDDGDKSSKKKSGGYKLMKKLKKEGKKIEAFIGEWDSNKESSASSGSEEEGGDDASSKKK 320
Query: 325 LMAIVKDKGAES-----------KEAVDSDSESEGDPNSDDENEVFASF-STSELKHALS 372
MA+V K A S V S S+SE D + DD + + F S E HA S
Sbjct: 321 KMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCDDVS--YDEFVSMFEELHAYS 378
Query: 373 D-IMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKIISDLKNENH 414
+ + K+ +L H LK L KT E I + E H
Sbjct: 379 EKEIVKFKALKKNHASLKV-LYEELKTSHERLTISHEKLKETH 420
>gb|AAK92658.1| Putative retroelement [Oryza sativa]
Length = 1131
Score = 130 bits (328), Expect = 3e-28
Identities = 110/403 (27%), Positives = 191/403 (47%), Gaps = 50/403 (12%)
Query: 49 KARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEP 108
+A L +++S EE+ ++++ E A I++ L HEG + K++K L +YE+F M P
Sbjct: 85 QAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETFSMLP 144
Query: 109 NESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSL 168
+ES+ +M+ R ++V ++ L +YT + +++R LPE + LVT + + D+ M+
Sbjct: 145 HESVNDMYGRLNVIVNDLKGLGANYTDLEIAQKMLRALPEKYETLVTML-INSDMSRMTP 203
Query: 169 EELISILKCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDE 228
L+ ++ ++M LKKK + S S+K +++ + + EA+ED E+E
Sbjct: 204 ASLLG-----KINTNDMYKLKKKEMEEASPSKKCIALQTEVEDKGKGKVNEANEDL-EEE 257
Query: 229 LTLISKRLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKL 288
+ L+++R N + ++ + +GS + + + S+++ CFEC E GH+ S CP
Sbjct: 258 IALLARRFNDLLGRKKERGRGSNSNRRRNRRPNKTLSNLR---CFECGEKGHFASKCPSK 314
Query: 289 KKD---------------KKPKKHFKTKKSLMVTFDESESEDVDSDGEVQG--------- 324
D KK KK K ++ + +D ++ S E +G
Sbjct: 315 DDDGDKSSKKKSGGYKLMKKLKKEGKKIEAFIGEWDSNKESSASSGSEEEGGDDASSKKK 374
Query: 325 LMAIVKDKGAES-----------KEAVDSDSESEGDPNSDDENEVFASF-STSELKHALS 372
MA+V K A S V S S+SE D + DD + + F S E HA S
Sbjct: 375 KMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCDDVS--YDEFVSMFEELHAYS 432
Query: 373 D-IMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKIISDLKNENH 414
+ + K+ +L H LK L KT E I + E H
Sbjct: 433 EKEIVKFKALKKNHASLKV-LYEELKTSHERLTISHEKLKETH 474
>ref|NP_909542.1| putative copia-type retrotransposon protein [Oryza sativa (japonica
cultivar-group)] gi|27764656|gb|AAO23081.1| putative
copia-type retrotransposon protein [Oryza sativa
(japonica cultivar-group)]
Length = 1183
Score = 129 bits (324), Expect = 8e-28
Identities = 104/404 (25%), Positives = 196/404 (47%), Gaps = 38/404 (9%)
Query: 49 KARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEP 108
+A L +++S EE+ ++++ E I++ L HEG + K++K L +YE+F M P
Sbjct: 65 QAMNALFNSLSQEEFDRVSNLESTYEIWNKLAEIHEGTSEYKDAKLHFLEIQYETFSMLP 124
Query: 109 NESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSL 168
+ES+ +M+ R ++V ++ L +Y + +++R LPE + LVT + + D+ M+L
Sbjct: 125 HESVNDMYGRLNVIVNDLKGLGANYNVLEVAQKMLRALPEKYETLVTML-INSDMSRMTL 183
Query: 169 EELISILKCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDE 228
L+ ++ ++M LKKK + S S+K V +++ + + EA+ED E+E
Sbjct: 184 ASLLG-----KINTNDMYKLKKKEMEEASPSKKCIVLQAEVEDKGKGKVNEANEDL-EEE 237
Query: 229 LTLISKRLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKL 288
+ L+++R N + R+ + +GS + + + S+++ CFEC E GH+ S CP
Sbjct: 238 IVLLARRFNDLLGRRKERRRGSNSNRRRNRRPNKTLSNLR---CFECGEKGHFASKCPSK 294
Query: 289 KKDKKPKKHFKTKKSLMVTFDESESEDVDSDGEVQGLMAIVKDKG--------AESKEAV 340
D S +E +D S + ++AI + A+ V
Sbjct: 295 DDD--------ADNSASSGSEEEGGDDASSKKKKMAVVAIKEAPSLFAPLCLMAKGSSKV 346
Query: 341 DSDSESEGDPNSDD--ENEVFASFSTSELKHALSD-IMDKYNSLLSTHKKLKKNLSAVSK 397
S S+SE D + DD +E+ + F E HA S+ + K+ +L H L+ +
Sbjct: 347 TSLSDSESDDDCDDVFYDELVSMF---EELHAYSEKEIVKFKALKKDHASLE---VLYEE 400
Query: 398 TPSEHEKIISDLKNENHALVNSNSVLKNQIAKLEEI-VACDASD 440
+ HE++ + +E + N + Q L ++ ++CD D
Sbjct: 401 LKTSHERL--TISHEKLKEAHDNLLSTTQHGALIDVGISCDLLD 442
>emb|CAE02142.1| OSJNBa0069D17.3 [Oryza sativa (japonica cultivar-group)]
gi|50923625|ref|XP_472173.1| OSJNBa0069D17.3 [Oryza
sativa (japonica cultivar-group)]
Length = 1156
Score = 129 bits (324), Expect = 8e-28
Identities = 121/463 (26%), Positives = 218/463 (46%), Gaps = 83/463 (17%)
Query: 35 EMTADQKKLYSQHHKARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKA 94
E+T++Q++L ++ +A +LSA+S EE+ K+ E AK I+D+L+++HEG+ V+E+K
Sbjct: 2 ELTSEQEQLIHRNAQASKAILSALSPEEFNKVDGLEEAKEIWDTLQLAHEGSPAVREAKI 61
Query: 95 LSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVI-RIIRCLPESWMPL 153
L + F+M+ E+ +EM+ R +LV I+ L T V+ R++R L
Sbjct: 62 ELLEGRLGRFVMDDKETPQEMYDRMMILVNKIKGLGSEDMTNHFVVKRLLRAFGPRNPTL 121
Query: 154 VTSIELTRDVENMSLEELISILKCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAE 213
V+ I +D + ++ +++ + HE++ E +++++ K+ + AL+A
Sbjct: 122 VSMIRERKDFKRLTPNDILGSIVSHEMQEEEAREVRQ-----MVKNAPMIKNQEVALKAN 176
Query: 214 EEESEEASEDSDEDELTLISKRLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCF 273
+EE E + E+S+++EL I KR +KH K SG KG+ + K+ S + CF
Sbjct: 177 QEE-ESSCEESEDEELAFIVKR----FKHFLRK---SGYGKGRKDDDKGKRQSKR--ACF 226
Query: 274 ECKESGHYKSDCPKLKK------DKKPKK-HFKTKKSLMVTFDESE-----------SED 315
C E GH+ +DCP+ + KKPK+ H V + E +
Sbjct: 227 NCGEYGHFIADCPRSNEAKAKGGKKKPKRAHVAEAHMAEVWYSGDEEYPEVKPKPKSKDK 286
Query: 316 VDSDGEVQGLMAIVKDKGAESKEAV-----DSDSES------------------------ 346
V+ +G G+ I + SKE + D D +S
Sbjct: 287 VEGEG---GVATIAFKSSSSSKERLFNNLSDDDDDSYHYSCFMAQGRKVMTQKPSHTSLD 343
Query: 347 --EGDPNSDDE-NEVFASFSTSELKH--ALSDIMDKYNSLLSTHKKL-----KKNL---S 393
D SD+E ++V S S ++H L +D L ++L K+NL
Sbjct: 344 VDSSDEESDNELDDVLKSLSKPTMQHLAKLMRALDSKEQSLERQEELLILEKKRNLDLEE 403
Query: 394 AVSKTPSEHEKIISDLKNENHALVNSNSVLKNQIAKLEEIVAC 436
+++K +++E++ +DL N +L + L++ L+E AC
Sbjct: 404 SLAKECAKNEQLANDLNLANGSLAS----LRDVNETLQEKFAC 442
>gb|AAO73525.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 129 bits (323), Expect = 1e-27
Identities = 119/446 (26%), Positives = 196/446 (43%), Gaps = 61/446 (13%)
Query: 3 SFFLGFDADLWDIIVDGYERP--VDTDGKKI----PRSEMTADQKKLYSQHHKARAILLS 56
+F D+ W ++ G+E P +DT+GK P + T ++ +L + KA L +
Sbjct: 30 AFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNALFN 89
Query: 57 AISYEEYQKITDREFAKGIF-DSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEM 115
+ ++ I AK + LK +HEG KVK S+ L K+E+ M+ E I +
Sbjct: 90 GVDKNIFRLINTCTVAKDACGEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHDF 149
Query: 116 FSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISIL 175
+ L + T + V +I+R LP+ + VT+IE +D+ NM ++ELI L
Sbjct: 150 HMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSL 209
Query: 176 KCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKR 235
+ EL S+ + K K++A S E EE+E + +++ + + L+ K+
Sbjct: 210 QTFELGLSDRNEKKSKNLAFVSNDE-----------GEEDEYDLDTDEGLTNAVGLLGKQ 258
Query: 236 LNRIWKHRQSKFKGSGR------AKGK--YESSGQKKSSIKEVTCFECKESGHYKSDCPK 287
N++ + K R KG ++ S +K S K + C C+ GH K++CP
Sbjct: 259 FNKVLNRMDRRQKPHVRNIPFDIRKGSEYHKKSDEKPSHSKGIQCHGCEGYGHIKAECPT 318
Query: 288 LKKDKKPKKHFKTKKSLMV-TFDESESE-DVDSDGEVQGLMAIVKDKGAESKEAVDSDSE 345
K K +K L V D++ESE + DSD +V L
Sbjct: 319 HLK--------KQRKGLSVCRSDDTESEQESDSDRDVNAL-----------------TGR 353
Query: 346 SEGDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKI 405
E D +S D F + S K + K +L +LKK ++ + HE+
Sbjct: 354 FESDEDSSDIEITFDELAISYRKLCI-----KSEKILQQEAQLKKVIANLEAEKEAHEEE 408
Query: 406 ISDLKNENHALVNSNSVLKNQIAKLE 431
IS+LK E L NS L+N ++
Sbjct: 409 ISELKGEVGFL---NSKLENMTKSIK 431
>gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|31432496|gb|AAP54118.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|37535058|ref|NP_921831.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1584
Score = 129 bits (323), Expect = 1e-27
Identities = 107/448 (23%), Positives = 201/448 (43%), Gaps = 68/448 (15%)
Query: 12 LWDIIVDGYERPVDTDGKKIPRSEMTADQKKLYSQHHKARAILLSAISYEEYQKITDREF 71
+W I+ G+ I + +T + + +A L +++S EE+ ++++ E
Sbjct: 37 IWSIVYVGFA---------ITGTPLTEIDHRNLQLNAQAMNALFNSLSQEEFDRVSNLET 87
Query: 72 AKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLNK 131
A I++ L HEG + K++K L +YE+F M P+ES+ +M+ R ++V ++ L
Sbjct: 88 AYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETFYMLPHESVNDMYGRLNVIVNDLKGLGA 147
Query: 132 SYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISILKCHELKRSEMQDLKKK 191
+YT + +++R LPE + LVT + + D+ M+ L+ ++ ++M LKKK
Sbjct: 148 NYTDLEVAQKMLRALPEKYETLVTML-INSDMSRMTPASLLG-----KINTNDMYKLKKK 201
Query: 192 SIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRLNRIWKHRQSKFKGSG 251
+ S S+K +++ + + E +ED E+E+ L+++R N + + R+ + +GS
Sbjct: 202 EMEEASPSKKCIALQAEVEDKSKSKVNEVNEDL-EEEMILLARRFNDLLERRKERGRGSN 260
Query: 252 RAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKLKKD---------------KKPKK 296
+ + + S+++ CFE E GH+ S CP D KK KK
Sbjct: 261 SNRRRNRRLNKTLSNLR---CFEYGEKGHFASKCPSKDDDGDKSSKKKSGGYKLMKKLKK 317
Query: 297 HFKTKKSLMVTFDESESEDVDSDGEVQG---------LMAIVKDKGAES----------- 336
K ++ + +D +E S E +G M +V K A S
Sbjct: 318 EGKKIEAFIGEWDSNEESSASSGSEEEGGDDASSKKKKMVVVAIKEAPSLFAPLCLMAKG 377
Query: 337 KEAVDSDSESEGDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVS 396
V S S+SE D + DD + +++ + L + +K A++
Sbjct: 378 SSKVTSLSDSESDDDCDDV--------------SYEELVSMFEELHAYSEKEIVKFKALN 423
Query: 397 KTPSEHEKIISDLKNENHALVNSNSVLK 424
K + + + +LK N L S+ LK
Sbjct: 424 KDYASLDVLYEELKTSNERLTISHEKLK 451
>gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|34902378|ref|NP_912535.1| Putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)]
Length = 2145
Score = 127 bits (319), Expect = 3e-27
Identities = 114/438 (26%), Positives = 193/438 (44%), Gaps = 73/438 (16%)
Query: 1 LESFFLGFDADLWDIIVDGYERPVDTDGKKIPRSEMTADQKKLYSQHHKARAILLSAISY 60
+E++ ++W+ + Y P D D +T +++AR ++ IS
Sbjct: 24 MEAYLQSQGHNVWNKVKSPYTVPDDAD--------ITPANMAQVDFNYRARNAIIGGISS 75
Query: 61 EEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQ 120
E+ ++ + A ++ +L HEGN ++ + ++Y+ F M P ESI+ F RF
Sbjct: 76 GEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFHKEYQRFEMHPGESIDSYFKRFG 135
Query: 121 LLVAGIRPLNKSYTTKDHVIRIIRCLPES-WMPLVTSIELTRDVENMSLEELISILKCHE 179
+++ +R + K ++ D+ ++ CL W VTSI + + ++++++L S LK HE
Sbjct: 136 EIISKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSITESAPLSDLTMDKLYSKLKTHE 195
Query: 180 LKRSEMQDLKKKSIAL-------KSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLI 232
+ + L K S+AL S ++ A V +L A +EE E ED+L L
Sbjct: 196 MDVFHRKGL-KHSMALVADPSGSTSSNDSAFVYGGFSLAALHSVTEEQLEKIPEDDLALF 254
Query: 233 SKRLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKLKK-- 290
+++ +R +K+ + + +G + + CFEC E H + +CPKLKK
Sbjct: 255 ARKFSRAYKNVRDRKRG---------------KTNEPFVCFECGEPNHKRVNCPKLKKKS 299
Query: 291 DKKPKK----HFKTKKSLM--------VTFDESESEDVDSDGEVQG-------------- 324
DK KK K KK LM +E + D+DSD + Q
Sbjct: 300 DKTTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDIDSDDDDQEKGDKDFSGMCCLAN 359
Query: 325 --------LMAIV-KDKGAESKEAVDSDSES-EG---DPNSDDENEVFASFSTSELKHAL 371
LMA+ KD +E E D S +G D + D + V S + H +
Sbjct: 360 NEDFINLCLMALEDKDDSSEHPEVCLDDIPSLDGSLCDDSCSDNDSVDDELSKERMAHLM 419
Query: 372 SDIMDKYNSLLSTHKKLK 389
+I DKY S +KLK
Sbjct: 420 IEISDKYRSSKYKIEKLK 437
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.355 0.156 0.545
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,161,019,742
Number of Sequences: 2540612
Number of extensions: 79453269
Number of successful extensions: 786964
Number of sequences better than 10.0: 4506
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 4481
Number of HSP's that attempted gapping in prelim test: 741668
Number of HSP's gapped (non-prelim): 24937
length of query: 1602
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1460
effective length of database: 502,593,490
effective search space: 733786495400
effective search space used: 733786495400
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 82 (36.2 bits)
Lotus: description of TM0369a.2