BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0346.9
(569 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189742.1| hypothetical protein [Arabidopsis thaliana] 119 3e-25
gb|AAD32756.1| putative replication protein A1 [Arabidopsis thal... 115 3e-24
ref|NP_174826.1| hypothetical protein [Arabidopsis thaliana] gi|... 114 1e-23
ref|NP_187935.1| hypothetical protein [Arabidopsis thaliana] 106 2e-21
dbj|BAB02796.1| replication protein A1-like [Arabidopsis thaliana] 102 3e-20
ref|NP_175703.1| replication protein-related [Arabidopsis thalia... 96 2e-18
dbj|BAD87333.1| DNA binding protein-like [Oryza sativa (japonica... 95 7e-18
gb|AAU44445.1| hypothetical protein AT2G05642 [Arabidopsis thali... 84 9e-15
ref|NP_189676.1| hypothetical protein [Arabidopsis thaliana] 83 3e-14
ref|NP_198524.1| hypothetical protein [Arabidopsis thaliana] 81 8e-14
gb|AAC95166.1| putative replication protein A1 [Arabidopsis thal... 81 1e-13
gb|AAF06081.1| F28J9.5 [Arabidopsis thaliana] gi|25403497|pir||D... 79 3e-13
gb|AAD15477.1| putative replication protein A1 [Arabidopsis thal... 75 7e-12
gb|AAP52633.1| putative replication protein [Oryza sativa (japon... 73 3e-11
emb|CAB91582.1| putative protein [Arabidopsis thaliana] gi|15228... 69 3e-10
gb|AAX95750.1| Eukaryotic protein of unknown function (DUF889), ... 69 3e-10
ref|NP_850486.1| expressed protein [Arabidopsis thaliana] 68 7e-10
dbj|BAB10788.1| replication protein A1-like [Arabidopsis thalian... 67 1e-09
ref|NP_198346.1| hypothetical protein [Arabidopsis thaliana] 67 1e-09
gb|AAC95163.1| putative replication protein A1 [Arabidopsis thal... 64 2e-08
>ref|NP_189742.1| hypothetical protein [Arabidopsis thaliana]
Length = 450
Score = 119 bits (297), Expect = 3e-25
Identities = 97/369 (26%), Positives = 162/369 (43%), Gaps = 33/369 (8%)
Query: 1 MSGKIYVISTINPSKETWNIVAKVQRLWLSPSLYGSKLPFSLDMVLVDSKGDKIHATVRK 60
M+ I + I P K W + +V W + ++ + + DMVL D +G KIHA+V++
Sbjct: 1 MAQPIAYLDDIKPYKTYWRVQVRVLHTWKTFTMQFGE---TFDMVLSDVRGKKIHASVKR 57
Query: 61 TLIYRFQSLLTEGRVYQISFFGVGESGRDFRTTGHAFKINFQIHTFVCVVTNTPINHSPY 120
+ RF+ + G I FG+ + ++ T H +K+ F T H
Sbjct: 58 EHLNRFERPIVRGEWRAIENFGLTYATGQYKATDHRYKMGFMAQT-----------HVVG 106
Query: 121 SFMAISEIMFNDPDASFLIDVIGILTGASGEHEFEKDGVSQKKITLELDQDGIHNVYGAT 180
+ + E+ D SF V A+GE V K+ D I N + +
Sbjct: 107 QIVNVGEM--ETIDGSFAEQVFTACETANGEMIICL--VRFAKLKTYKDVRSISNAFNTS 162
Query: 181 KILFNPAIDEATKIRERNDPASQVLSQLQDSGMIYVEE----DLLRQTDGKTIEQIKDLT 236
+IL N I E + ++ L+ ++ V E D Q KTI+++ ++
Sbjct: 163 QILINTDIPEILEFKDALPKDGLALTLIESKPKSEVAELPTGDFYLQFAKKTIKEVSEMF 222
Query: 237 EKSYCVVLGTMKYIPDGMDWYYPACK-CSKKVYPA-----DGMYFCEACNRHVASPLYKF 290
+ VL T+ I WYY ACK C+KKV ++CE C V + L ++
Sbjct: 223 D-----VLCTIYDIDRDWSWYYIACKKCNKKVTKVVTTSLKAQFWCETCRAPVNNVLARY 277
Query: 291 RIQLRVMNSKNTATFVLFDQEANSVVKKPCAILVDASNKAGPDSPNVPSDILDLIDRTFL 350
++ ++VM+S +LFD A+ +V P L+D S D N+P I +LI +T+
Sbjct: 278 KLHVKVMDSSGEMKLMLFDAMASEIVGCPANNLLDGSFDEIEDPDNIPGSIKNLIGKTYQ 337
Query: 351 FKIEVSNSS 359
+ + V N +
Sbjct: 338 YLVCVENEN 346
>gb|AAD32756.1| putative replication protein A1 [Arabidopsis thaliana]
gi|15226034|ref|NP_178764.1| hypothetical protein
[Arabidopsis thaliana] gi|25363326|pir||A84487 probable
replication protein A1 [imported] - Arabidopsis thaliana
Length = 458
Score = 115 bits (289), Expect = 3e-24
Identities = 91/375 (24%), Positives = 159/375 (42%), Gaps = 58/375 (15%)
Query: 41 SLDMVLVDSKGDKIHATVRKTLIYRFQSLLTEGRVYQISFFGVGESGRDFRTTGHAFKIN 100
+ DMVL D +G KIHA+V++ + RF+ L+ G I FG+ + F+ T H +K+
Sbjct: 6 TFDMVLSDVRGKKIHASVKREHLNRFERLIVPGEWRAIENFGLTYATGQFKATDHRYKMG 65
Query: 101 FQIHTFVCVVTNTPINHSPY-SFMAISEIMFNDPDASFLIDVIGILTGASGEHEFEKDGV 159
F T V V P++ S + S A ++++ + ++LIDV+G + +
Sbjct: 66 FMAQTRV--VRIDPLSDSYFLSLTAFNDVLNGGLNQNYLIDVVGQIVNVGEMETIDVHNQ 123
Query: 160 SQKKITLEL---------------------------------------------DQDGIH 174
KKI EL D I
Sbjct: 124 PTKKIDFELRDQKDERLPCTLWGSFAEQVFTACEAANGEMIICLVRFAKLKTYKDVRSIS 183
Query: 175 NVYGATKILFNPAIDEATKIRERNDPASQVLSQLQDSGMIYVEE----DLLRQTDGKTIE 230
N + ++IL NP + E + ++ L+ ++ ++E D Q KTI+
Sbjct: 184 NAFNTSQILINPDLPEILEFKDALPKDCLALTLIESKPKSKIDEFPTGDFYLQFAKKTIK 243
Query: 231 QIKDLTEKSYCVVLGTMKYIPDGMDWYYPACK-CSKKVYPA-----DGMYFCEACNRHVA 284
++ ++ + VL T+ I WYY CK C+KKV +CE C +
Sbjct: 244 EVSEMFDVGRVKVLCTIYDIDRDWSWYYIVCKKCNKKVTKVVMTSLKAQLWCETCRAPIT 303
Query: 285 SPLYKFRIQLRVMNSKNTATFVLFDQEANSVVKKPCAILVDASNKAGPDSPNVPSDILDL 344
+ L ++++ ++VM+S +LFD ++ +V P L+D S D +P I +L
Sbjct: 304 NVLARYKLHVKVMDSSGEMKLMLFDAMSSEIVGCPANNLLDGSFDEIEDPDILPDSIKNL 363
Query: 345 IDRTFLFKIEVSNSS 359
I +T+ + + V N +
Sbjct: 364 IGKTYQYLVCVENEN 378
>ref|NP_174826.1| hypothetical protein [Arabidopsis thaliana] gi|25518393|pir||B86481
hypothetical protein F10O5.9 - Arabidopsis thaliana
gi|12322096|gb|AAG51090.1| hypothetical protein
[Arabidopsis thaliana]
Length = 567
Score = 114 bits (284), Expect = 1e-23
Identities = 101/431 (23%), Positives = 177/431 (40%), Gaps = 55/431 (12%)
Query: 1 MSGKIYVISTINPSKETWNIVAKVQRLWLSPSLYGSKLPFSLDMVLVDSKGDKIHATVRK 60
M+ + + P K W + K+ W Y S ++++V+ D G K+HATV+K
Sbjct: 1 MAATFAYLKDVRPYKNAWRVQVKILHSWKQ---YTSNTRETIELVISDEHGKKMHATVKK 57
Query: 61 TLIYRFQSLLTEGRVYQISFFGVGESGRDFRTTGHAFKINFQIHTFVCVVTNTPINHSPY 120
L+ +F L G I FG+ + FR T H +K+ FQ+ T V + ++ S +
Sbjct: 58 ELVSKFVHKLIVGEWVFIEIFGLTYASGQFRPTNHLYKMAFQVRTEVMGCAS--VSDSNF 115
Query: 121 SFMA-ISEIMFNDPDASFLIDVIGILTGASGEHEFEKDGVSQKKITLEL-DQ-------- 170
+A S+I + + L+D IG + E + + KI E+ DQ
Sbjct: 116 LTLASFSKIQSGELNPHMLVDAIGQIITVGELEELKANNKRTTKIDFEIRDQMDERMQVT 175
Query: 171 ------------------------DGIHNVYGATKILFNPAIDEATKIRER--NDPASQV 204
+ N + A+++ NP E + ND A V
Sbjct: 176 LWGTYAQEVYRACQESEGKNTASVKSLSNSFDASQVHVNPDFPEVHDFSQTLLNDGAICV 235
Query: 205 L-SQLQDSGMIYVEEDLLRQTDGKTIEQIKDLTEKSYCVVLGTMKYIPDGMDWYYPACK- 262
+++ M+ V+ + TIE + TE VL T+ + WYY +CK
Sbjct: 236 FRARVPRFEMVAVKRTDYSEYTRNTIENLLSSTEVGKVRVLCTIYAVDTDWAWYYISCKT 295
Query: 263 CSKKVYPADG------------MYFCEACNRHVASPLYKFRIQLRVMNSKNTATFVLFDQ 310
C+KKV ++C+ C V + + ++ I +VM+S A +LFD
Sbjct: 296 CNKKVNHIHAGVNGVNNKGKKPRFWCDTCTSVVTNVVSRYMIYAKVMDSTGEAKLLLFDS 355
Query: 311 EANSVVKKPCAILVDASNKAGPDSPNVPSDILDLIDRTFLFKIEVSNSSNSIYEPSYRVK 370
+ ++ + A + + S D ++P + +LI +TFLF + V + + Y+V
Sbjct: 356 ICSEIIGESAASVFNGSVDEIDDPEDLPDSVKNLIGKTFLFLVCVEKDNILDGKEIYKVS 415
Query: 371 KFCYDPEIINQ 381
K +I +
Sbjct: 416 KVLLKDGLIEE 426
>ref|NP_187935.1| hypothetical protein [Arabidopsis thaliana]
Length = 570
Score = 106 bits (264), Expect = 2e-21
Identities = 93/432 (21%), Positives = 174/432 (39%), Gaps = 75/432 (17%)
Query: 1 MSGKIYVISTINPSKETWNIVAKVQRLWLSPSLYGSKLPFSLDMVLVDSKGDKIHATVRK 60
M+ ++ + P K +W + K W Y + +L++V D G KIH +VRK
Sbjct: 1 MAATFGYLTDVRPYKTSWRVQVKTLHAWRQ---YTANTGETLEVVFSDETGKKIHCSVRK 57
Query: 61 TLIYRFQSLLTEGRVYQISFFGVGESGRDFRTTGHAFKINFQIHTFVCVVTNTPINHSPY 120
L+ ++ ++LT G I F + +G FR T H +K++F T V+ + ++ S Y
Sbjct: 58 DLVSKYANMLTVGEWVFIETFSLNYAGGSFRPTSHLYKMSFVNGT--SVIPSPSVSDSNY 115
Query: 121 SFMAISE-IMFNDPDASFLIDVIGILTGASGEHEFEKDGVSQKKITLELDQ--------- 170
+A E I + + + L+DVIG + E E + KI ++
Sbjct: 116 LTLATFEKIQSGELNPTMLVDVIGQIVMIGELEELEANNKPTTKIDFDIRDASDERIGVT 175
Query: 171 -------------------------DGIHNVYGATKILFNPAIDEATKI----------- 194
+ N + A+++ NP E
Sbjct: 176 LWGTFAQQVYRGCNEAGARPVVCVLRNLSNSFDASQVFVNPQFPEVDAFLRTLPQDGILL 235
Query: 195 --RERNDPASQVLSQLQDSGMIYVEEDLLRQTDGKTIEQIKDLTEKSYCVVLGTMKYIPD 252
RER V+S+ DS + Y TI+Q+ + + ++ T+ I
Sbjct: 236 TYRERIPKLEIVVSKKSDSCLEYPR---------NTIQQLLNAVDVGKARLMCTIYAIDT 286
Query: 253 GMDWYYPACK-CSKKVYPADG------------MYFCEACNRHVASPLYKFRIQLRVMNS 299
WYY +C+ C+KKV ++C++C V + + ++ I +VM++
Sbjct: 287 DWAWYYISCRACNKKVTHIHSGVHGVNNKGKKPRFWCDSCKTVVTNVIARYMIYAKVMDN 346
Query: 300 KNTATFVLFDQEANSVVKKPCAILVDASNKAGPDSPNVPSDILDLIDRTFLFKIEVSNSS 359
+ +LFDQ ++ + +++ S D ++P + +L +TFLF + + +
Sbjct: 347 TGESKLLLFDQICTEIIGETAPSVLNGSVDEIDDPDDLPDALKNLYGKTFLFLVSIEKEN 406
Query: 360 NSIYEPSYRVKK 371
+ Y+V K
Sbjct: 407 IWDGKEIYKVTK 418
>dbj|BAB02796.1| replication protein A1-like [Arabidopsis thaliana]
Length = 581
Score = 102 bits (255), Expect = 3e-20
Identities = 94/443 (21%), Positives = 176/443 (39%), Gaps = 86/443 (19%)
Query: 1 MSGKIYVISTINPSKETWNIVAKVQRLWLSPSLYGSKLPFSLDMVLVDSKGDKIHATVRK 60
M+ ++ + P K +W + K W Y + +L++V D G KIH +VRK
Sbjct: 1 MAATFGYLTDVRPYKTSWRVQVKTLHAWRQ---YTANTGETLEVVFSDETGKKIHCSVRK 57
Query: 61 TLIYRFQSLLTEGRVYQISFFGVGESGRDFRTTGHAFKINFQIHTFVCVVTNTPINHSPY 120
L+ ++ ++LT G I F + +G FR T H +K++F T V+ + ++ S Y
Sbjct: 58 DLVSKYANMLTVGEWVFIETFSLNYAGGSFRPTSHLYKMSFVNGT--SVIPSPSVSDSNY 115
Query: 121 SFMAISE-IMFNDPDASFLIDVIGILTGASGEHEFEKDGVSQKKITLEL----------- 168
+A E I + + + L+DVIG + E E + KI ++
Sbjct: 116 LTLATFEKIQSGELNPTMLVDVIGQIVMIGELEELEANNKPTTKIDFDIRDASDERIGVT 175
Query: 169 -------------------------------DQDGIHNV---YGATKILFNPAIDEATKI 194
G+ N+ + A+++ NP E
Sbjct: 176 LWGTFAQQVYRGCNEAGARPVVCVLRFVKIKSYKGVRNLSNSFDASQVFVNPQFPEVDAF 235
Query: 195 -------------RERNDPASQVLSQLQDSGMIYVEEDLLRQTDGKTIEQIKDLTEKSYC 241
RER V+S+ DS + Y TI+Q+ + +
Sbjct: 236 LRTLPQDGILLTYRERIPKLEIVVSKKSDSCLEYPR---------NTIQQLLNAVDVGKA 286
Query: 242 VVLGTMKYIPDGMDWYYPACK-CSKKVYPADG------------MYFCEACNRHVASPLY 288
++ T+ I WYY +C+ C+KKV ++C++C V + +
Sbjct: 287 RLMCTIYAIDTDWAWYYISCRACNKKVTHIHSGVHGVNNKGKKPRFWCDSCKTVVTNVIA 346
Query: 289 KFRIQLRVMNSKNTATFVLFDQEANSVVKKPCAILVDASNKAGPDSPNVPSDILDLIDRT 348
++ I +VM++ + +LFDQ ++ + +++ S D ++P + +L +T
Sbjct: 347 RYMIYAKVMDNTGESKLLLFDQICTEIIGETAPSVLNGSVDEIDDPDDLPDALKNLYGKT 406
Query: 349 FLFKIEVSNSSNSIYEPSYRVKK 371
FLF + + + + Y+V K
Sbjct: 407 FLFLVSIEKENIWDGKEIYKVTK 429
>ref|NP_175703.1| replication protein-related [Arabidopsis thaliana]
gi|12324642|gb|AAG52278.1| putative replication protein;
94555-97079 [Arabidopsis thaliana]
Length = 566
Score = 96.3 bits (238), Expect = 2e-18
Identities = 91/427 (21%), Positives = 171/427 (39%), Gaps = 76/427 (17%)
Query: 8 ISTINPSKETWNIVAKVQRLWLSPSLYGSKLPFSLDMVLVDSKGDKIHATVRKTLIYRFQ 67
I + P K +W I K+ W + Y S +M+L D G+KI A ++K + + Q
Sbjct: 10 IKNLKPFKTSWCIQVKILHAW---NHYTKGSGMSYEMMLADEDGNKIQAGIKKEHLLKLQ 66
Query: 68 SLLTEGRVYQISFFGVGESGRDFRTTGHAFKINFQIHTFVCVVTNTPINHSP-------Y 120
+ G I F V ++ +R+T H ++IN Q ++T ++SP
Sbjct: 67 RYVKIGHWTIIEEFSVTKASGLYRSTTHPYRINIQ--------SSTRFSNSPTISDEIWL 118
Query: 121 SFMAISEIMFNDPDASFLIDVIGILTGASGEHEFEKDGVSQKKITLELDQ---------- 170
+ ++++ D + L++VIG L + G KKI +L
Sbjct: 119 DLVNFNDVLSGTLDQNKLVNVIGQLVNVGEIQLLDVQGKPTKKIDFQLRDTDDNRLPCSL 178
Query: 171 -----DGIH------------------------------NVYGATKILFNPAIDEATKIR 195
D IH N + A+++ NP + E + +
Sbjct: 179 WGKFADQIHKVSKESVGGIVICLIRWAKLGHYKEIRSISNAFDASEVFINPILTEVEEFK 238
Query: 196 ERNDPASQVLSQLQDSGM---IYVEEDLLRQTDGKTIEQIKDLTEKSYCVVLGTMKYIPD 252
L+ ++ + V E+ +Q + KTI ++K E ++ ++ I
Sbjct: 239 NLLPSDGLALTIMEPKPRFQPLRVREERSKQFERKTIAELKASFEVEKVKIICSILSIDL 298
Query: 253 GMDWYYPA-CKCSKKVYPADG---------MYFCEACNRHVASPLYKFRIQLRVMNSKNT 302
WYY A KC+KKV+ + +Y C+ C V S ++ + L +M++
Sbjct: 299 DYSWYYYAHIKCNKKVFKSKKTLSSGAKKIIYRCDKCATDVTSIEARYWLHLDIMDNTGE 358
Query: 303 ATFVLFDQEANSVVKKPCAILVDASNKAGPDSPNVPSDILDLIDRTFLFKIEVSNSSNSI 362
+ +LFD ++ P L+D +N+ + +P + ++I +T+ F + V + S
Sbjct: 359 SKLMLFDSFVEPIIGCPATELLDVTNEQIDEPQPLPDVVKNIIGKTYQFLVCVEQDNISR 418
Query: 363 YEPSYRV 369
Y+V
Sbjct: 419 GNDEYKV 425
>dbj|BAD87333.1| DNA binding protein-like [Oryza sativa (japonica cultivar-group)]
gi|57899579|dbj|BAD87158.1| DNA binding protein-like
[Oryza sativa (japonica cultivar-group)]
Length = 1083
Score = 94.7 bits (234), Expect = 7e-18
Identities = 94/408 (23%), Positives = 170/408 (41%), Gaps = 73/408 (17%)
Query: 20 IVAKVQRLWLSPSLYGSKLPFSLDMVLVDSKGDKIHATVRKTLIYRFQSLLTEGRVYQIS 79
++A+V RLW + + +D+VLVD KG IHA + L+ F+ LLTEG+VY +
Sbjct: 531 LLARVSRLWEFTDCKDATKIYHIDLVLVDEKGGSIHAQIFPLLLQVFKPLLTEGKVYYLD 590
Query: 80 FFGVGESGRDFRTTGHAFKINFQIHTFVCVVTNTPINHSP--YSFMAISEIM-FNDPDAS 136
+ V S + +R + + F T V + P N YS ++E+ F D + S
Sbjct: 591 SYRVKTSNKSYRPVANPLMMTFTKWTSVEQCLDVPFNFPTVVYSLTPLNEVSNFVDKNES 650
Query: 137 FLIDVIGILTGASGE---HEFEKDGVSQKKI-------------------TLELDQDGIH 174
F +DVIG++T S +D S K+ L D + IH
Sbjct: 651 F-VDVIGVITEISTPTMLRPKSRDASSLKRTVQICYANNSTLNVSLWAEQALAFDAESIH 709
Query: 175 NV---------------------------YGATKILFNPAIDEATKIRERNDPASQVLSQ 207
K N + + ++ R Q +
Sbjct: 710 KAGQSEPQIVLFVGTLAKNYPGIGLALSRGSVCKWYININVPKMVDLKNRIGANFQPIKL 769
Query: 208 LQDSGMIYVEEDLLRQTDGKTIEQIKDL----TEKSYCVVLGTMKYIPDGMDWYYPAC-K 262
LQ +E+ D KT+ + D+ ++ T++ I + W+Y +C K
Sbjct: 770 LQAPTTNIADEN----ADDKTVRERLDMNPHKNRRTRFQANVTIRKICNDSSWWYNSCEK 825
Query: 263 CSKKVYPADGMYFCEACNRHVASPLYKFRIQLRVMNSKNTATFVLFDQEANSVVKKPCAI 322
C + V P Y N + +Y++++ + + A F+LF + A +V+KP +
Sbjct: 826 CLRVVKPFGYTY-----NEII---MYRYKLSVLAGDDTADAVFILFGKIAQRIVRKPVEL 877
Query: 323 LVDASNKAGPDSPNVPSDILDLIDRTFLFKIEVSNSSNSIYEPSYRVK 370
LV+ + + +S +P I+ L++R+F + + + ++ + S++VK
Sbjct: 878 LVEQTTR---ESKFIPDAIIALLERSFTWNVSFTENTLRTGDVSFQVK 922
>gb|AAU44445.1| hypothetical protein AT2G05642 [Arabidopsis thaliana]
Length = 364
Score = 84.3 bits (207), Expect = 9e-15
Identities = 76/299 (25%), Positives = 132/299 (43%), Gaps = 33/299 (11%)
Query: 179 ATKILFNPAIDEATKIRE---RNDP-ASQVLSQLQDSGMIYVEEDLLRQTDGKTIEQIKD 234
+TK+ N +I E T+ +E ++D A +S + S + D KTI D
Sbjct: 38 STKLFINSSIAEITEFKESLAKSDCLALTTISTITSSSSSKHSKPSFSLRDQKTIA---D 94
Query: 235 LTEKSYCVVLGTMKYIPDGMDWYYPACK-CSKKVYP---------ADGMYFCEACNRHVA 284
+ C ++ ++ I + W+Y C C KKV P G Y CE C+ V
Sbjct: 95 INSGGACNIIASIFSIDTKVPWFYIGCNICFKKVSPYFNPETEEIEAGKYECEKCDTFVT 154
Query: 285 SPLYKFRIQLRVMNSKNTATFVLFDQEANSVVKKPCAILVDASNKAGPDSPNVPSDILDL 344
+ +FR+Q+ V++ A+F+LFDQ+ ++ K L++ + S +P ++LDL
Sbjct: 155 TTSTRFRVQVTVLDHTGEASFLLFDQDVIKLIHKSTYELLEQQVQFN-RSDKIPQELLDL 213
Query: 345 IDRTFLFKIEVSNSSNSIYEPSYRVKKFCYDPEIINQFISNSPHLMYDESNPFYFLATPT 404
R F+F I+ S+S+ +RV + PEI+ +F N L + ++P + +
Sbjct: 214 EGRQFVFTIQGSDSTKFSRPSIFRVYELTDKPEIVQKFQENL--LQMNTTDPNTHMVSSF 271
Query: 405 SVLKQESINPEISKDLNVEFAVAGELPNTDSPPASAVDLGCDTQNLSFDGGSSDMSGIK 463
S P+ D+N+ S P++A DT++ + S IK
Sbjct: 272 SNSTTSETEPD--SDMNIV-----------STPSNATTNQIDTESSEAANYENSNSSIK 317
>ref|NP_189676.1| hypothetical protein [Arabidopsis thaliana]
Length = 509
Score = 82.8 bits (203), Expect = 3e-14
Identities = 100/419 (23%), Positives = 164/419 (38%), Gaps = 85/419 (20%)
Query: 8 ISTINPSKETWNIVAKVQRLWLSPSLYGSKLPFSLDMVLVDSKGDKIHATVRKTLIYRFQ 67
+ ++ P K W I K+ +W Y K S++++LVD GDK++A+VR+ I +F+
Sbjct: 12 LKSLKPYKNAWRIQVKLLHVWRQ---YSVKAGESIEIILVDEAGDKMYASVRREQIKKFE 68
Query: 68 SLLTEGRVYQISFFGVGESGRDFRTTGHAFKINFQIHTFVCVVTNTPI-NHSPYSFMAIS 126
LTEG V++I TT + Q H F T +P N S F++++
Sbjct: 69 RCLTEG-VWKII------------TTITLNPTSGQYHWFCFQTTVSPCDNVSDALFLSLA 115
Query: 127 E---IMFNDPDASFLIDVIGILTGASGEHEFEKDGVSQKKITLEL-DQDGIH---NVYGA 179
+ I+ +++ L ++IG + S KKI L DQ ++G
Sbjct: 116 KFDVILSRSANSNILHNIIGQVVNRSEIQNLNASNKPTKKIDFHLRDQHDTRLACTLWGK 175
Query: 180 TKILFNPAIDEAT-----------KIRERNDPASQVLSQLQDSGMIYVEEDLLR------ 222
+ + A E+T KI ND S +S D ++V+ L
Sbjct: 176 YAEIVDQACQESTDGIVVCLIRFAKINLYNDTRS--VSNSFDVSQVFVDHTLAELGLFKQ 233
Query: 223 --QTDG---------------------------KTIEQIKDLTEKSYCVVLGTMKYIPDG 253
TDG +TI+++ ++ C + T+ I
Sbjct: 234 SIPTDGLTLGSSGSFHKRLYAPRTGDDDGDYPRQTIKEVLTFSDVGKCKTVCTVSAIDTD 293
Query: 254 MDWYYPACKC-SKKV------------YPADGMYFCEACNRHVASPLYKFRIQLRVMNSK 300
WYY C+ +KKV P ++CE CN S + KF + L +M+
Sbjct: 294 WPWYYFCCRAHNKKVVKEEAIKFEDVKLPQKPRFWCEICNGFAKSVVPKFWLHLHIMDQT 353
Query: 301 NTATFVLFDQEANSVVKKPCAILVDASNKAGPDSPNVPSDILDLIDRTFLFKIEVSNSS 359
A +LFD A ++ L+ S D +P I L +TF F + V +
Sbjct: 354 GEAKCMLFDSHAKEILGITAHDLLAGSFDEIEDPTVLPDVINCLKGKTFQFLLCVQREN 412
>ref|NP_198524.1| hypothetical protein [Arabidopsis thaliana]
Length = 566
Score = 81.3 bits (199), Expect = 8e-14
Identities = 86/432 (19%), Positives = 172/432 (38%), Gaps = 60/432 (13%)
Query: 8 ISTINPSKETWNIVAKVQRLWLSPSLYGSKLPFSLDMVLVDSKGDKIHATVRKTLIYRFQ 67
+S + P K W + K+ LW + +LD+++ D G K+H T+RK I +F
Sbjct: 38 LSDVKPFKTNWCVRVKILHLWRQTKDASRE---TLDVIICDENGSKMHITIRKHYIGKFH 94
Query: 68 SLLTEGRVYQISFFGVGESGRDFRTTGHAFKINFQIHTFVCVVTNTPINHSPYSFMAISE 127
+ G I F + ++ + +++ F +T V+ P++ S + +A E
Sbjct: 95 RSIKVGDWKIIDNFTLSPLTGKYKISSLTYRMAFNHNT--DVIKCDPVSDSVFLDLADFE 152
Query: 128 -IMFNDPDASFLIDVIGILTGASGEHEFEKDGVSQKKITLELDQDGI---------HNVY 177
+ D + LID++G + E ++Q K +LD + + V+
Sbjct: 153 GVKTESYDENVLIDILGQVVRVGKVDEI----MAQNKPNKKLDNERLPCTLWGVFAEKVF 208
Query: 178 GATKILFNPAIDEATKIRERNDPASQVLSQLQDSGMIYVEEDLLRQTDGKTIEQI----- 232
A K + + DE T + R + ++ + V E ++ +E
Sbjct: 209 SALKSIKH---DEKTVVLIRYAKINNFKGEISITSAFDVSEVIINPVHVPEVELFVKSLP 265
Query: 233 --------------KDLTEKSYCVVLGTMKYIPDGMDWYYPAC-KCSKKV---------- 267
+DL + +LG++ I W+Y C KC++K
Sbjct: 266 SDGLALTIQDNYVNRDLIKVGQWRILGSIFAIDTDWGWFYFGCPKCNRKTELVKESTSTG 325
Query: 268 ----YPADGMYFCEACNRHVASPLYKFRIQLRVMNSKNTATFVLFDQEANSVVKKPCAIL 323
P ++C+ C + + ++++ +RVM+ ++F+ A ++ K L
Sbjct: 326 KMVKTPMKPKFWCDKCQESITNVEARYKLHVRVMDQTAEIKLMVFENNATKLIGKSSEEL 385
Query: 324 VDASNKAGPDSPNVPSDIL-DLIDRTFLFKIEVSNSSNSIYEPSYRVKKFCYDPEIINQF 382
VD + + P + SD++ +L +TF F + V ++ + Y+V K + +I +
Sbjct: 386 VDGQYE---EDPTIISDVITNLCGKTFHFLVSVEKANIYGGKDIYKVTKVHFGTDIAKEE 442
Query: 383 ISNSPHLMYDES 394
YD S
Sbjct: 443 SGLLEDTQYDPS 454
>gb|AAC95166.1| putative replication protein A1 [Arabidopsis thaliana]
gi|15225003|ref|NP_178646.1| hypothetical protein
[Arabidopsis thaliana] gi|25363334|pir||F84472 probable
replication protein A1 [imported] - Arabidopsis thaliana
Length = 456
Score = 80.9 bits (198), Expect = 1e-13
Identities = 100/425 (23%), Positives = 166/425 (38%), Gaps = 67/425 (15%)
Query: 34 YGSKLPFSLDMVLVDSKGDKIHATVRKTLIYRFQSLLTEGRVYQISFFGVGESGRDFRTT 93
Y K S+ M+LVD GDK++A VR+ I +F+ +TEG I+ + + +R +
Sbjct: 7 YSVKAGESIKMILVDKAGDKMYAAVRREQIKKFERCVTEGVWKIITTITLNPTSDQYRIS 66
Query: 94 GHAFKINFQIHTFVCVVTNTPINHSPYSFMAISEIMFNDPDASFLIDVIGILTGASGEHE 153
+KI F T V +T + S I+ +++ L DV+G + S +
Sbjct: 67 DLKYKIGFVFKTTVS-PCDTVSDSLFLSLAKFDVILSGSTNSNILHDVMGQVIDRSEIQD 125
Query: 154 FEKDGVSQKKITLEL-DQDGIH---NVYGATKILFNPAIDEAT-----------KIRERN 198
+ KKI L DQ ++G + + A E+T KI N
Sbjct: 126 LNANNKPTKKIDFHLRDQHDTRLACILWGKYAEIVDKACQESTDGIVVCLIRFAKINLYN 185
Query: 199 DPASQVLSQLQDSGMIYV-----EEDLLRQ---TDG------------------------ 226
D S +S D ++V E DL +Q TDG
Sbjct: 186 DTRS--VSNFFDVSQVFVDPTLAELDLFKQSIPTDGLTLGSSGSFHKRLYAPRTGDDDGD 243
Query: 227 ---KTIEQIKDLTEKSYCVVLGTMKYIPDGMDWYYPACKC-SKKV------------YPA 270
+TI+++ ++ C + T+ I YY C+ +KKV P
Sbjct: 244 YPRQTIKEVLTSSDVGKCKTVCTVSAIDTDWPCYYFCCRAHNKKVVKEEAIKLEDVKQPQ 303
Query: 271 DGMYFCEACNRHVASPLYKFRIQLRVMNSKNTATFVLFDQEANSVVKKPCAILVDASNKA 330
++CE CN S + KF + L +M+ + A +LFD A ++ L+D S
Sbjct: 304 KPRFWCEICNGFAKSVVAKFCLHLHIMDQTDEARCMLFDSHAKEILGTTAPQLLDGSFDE 363
Query: 331 GPDSPNVPSDILDLIDRTFLFKIEVSNSSNSIYEPSYRVKKFCYDPEIINQFISNSPHLM 390
D +P I L +TF F + + + S+ V + Y I+++ +
Sbjct: 364 IEDPTVLPDVINGLKGKTFQFLLCIQRENIFGGYDSFTVAR-VYTGNIVDEIVQEDSDAY 422
Query: 391 YDESN 395
D S+
Sbjct: 423 VDPSS 427
>gb|AAF06081.1| F28J9.5 [Arabidopsis thaliana] gi|25403497|pir||D86486 protein
F28J9.5 [imported] - Arabidopsis thaliana
Length = 483
Score = 79.3 bits (194), Expect = 3e-13
Identities = 103/488 (21%), Positives = 189/488 (38%), Gaps = 92/488 (18%)
Query: 1 MSGKIYVISTINPSKETWNIVAKVQRLWLSPSLYGSKLPFSLDMVLVDSKGDKIHATVRK 60
+S + INP+ + + I +V RLW +L S++MVLVD +G ++HA++ +
Sbjct: 5 LSNSFVYLREINPALDQYKIKVRVVRLW--------RLFKSIEMVLVDGEGTRVHASIEE 56
Query: 61 TLIYRFQSLLTEGRVYQISFFGVGESGRDFRTTGHAFKINFQIHTFVCVVTNTPINHSPY 120
L RFQ G I F D+RT+ +FKI F T V N P
Sbjct: 57 GLGKRFQHQFVSGESRIIDTFSFVYYDGDYRTSPLSFKIVFYRTTTVKPCDNFPSQAPDK 116
Query: 121 SFMAISEIMFNDPDASFLIDVIGILTGASGEHEFEKDGVSQKKITLELDQDGIHNVYGAT 180
F +EI+ D LIDV+G + + G +D ++ + +
Sbjct: 117 YFKEFNEILSGRLDRQILIDVLGQIVDVGSLDSIKAKG-----------KDTVNKKWPSF 165
Query: 181 KILF--NPAIDEATKIRERNDPA------------------SQVLSQLQDSGMIYVE--- 217
++ + + AI+ ++ + N+P ++ +I+V+
Sbjct: 166 RVYYMGDLAINFSSYFKNNNEPVIVCVVRFACIKEWKGNIFDIIMLSAGSEDLIHVDSEN 225
Query: 218 ----------EDLLRQTDGKTIEQIKDLTE----KSYCVVLGTMKYIPDGMDWYYPACK- 262
E+ + + KT+E I + S + GT+ ++ + + K
Sbjct: 226 KTSHSAVTLYEEFFQLNEKKTVEDIVYACDPESVSSRLCLNGTILHVKYVVRRFSRIHKV 285
Query: 263 CSKKVY-PADGMYFCEACNRH--------------VASPLYKFRIQLRV-MNSKNTATFV 306
C KK + A + C C+ ++ LY++++ LR + +
Sbjct: 286 CGKKAHGDAGPICSCGVCDADATDVSYSVVYLLIMMSLDLYRYKLILRASYGASPEVKLL 345
Query: 307 LFDQEANSVVKKPCAILVDASNKAGPDSPNVPSDILDLIDRTFLFKIEVSNSSNSIYEPS 366
FD A ++ K A K D +P + DL+ +T LFK+ + + + +
Sbjct: 346 FFDGLAQCLIGKTAAEFFAEVPKES-DPSILPEVLADLMGKTMLFKLSIGTDNLKSTKAA 404
Query: 367 YRVKKFCYDPEIINQFISNSPHLMYDESNPFYFLATPTSVLKQESINPEISKDLNVEFAV 426
Y V+KF +++ +F T S + INP+I +E +V
Sbjct: 405 YVVEKFWEKTDMVEKFAKE---------------LTVVSDSACDIINPKIEM---IESSV 446
Query: 427 AGELPNTD 434
+ P+TD
Sbjct: 447 VDDSPSTD 454
>gb|AAD15477.1| putative replication protein A1 [Arabidopsis thaliana]
gi|25363332|pir||D84517 probable replication protein A1
[imported] - Arabidopsis thaliana
Length = 527
Score = 74.7 bits (182), Expect = 7e-12
Identities = 81/336 (24%), Positives = 133/336 (39%), Gaps = 47/336 (13%)
Query: 54 IHATVRKTLIYRFQSLLTEGRVYQISFFGVGESGRDFRTTGHAFKINFQIHTFVCVVTNT 113
+HA V+K L+ +F L G I FG+ + FR T H +K+ F + T V +
Sbjct: 1 MHAIVKKELVSKFVHKLLVGEWVFIEIFGLTYASGQFRPTNHLYKMAFHVRTKVMGCAS- 59
Query: 114 PINHSPYSFMA-ISEIMFNDPDASFLIDVIGILTGASGEHEFEKDGVSQKKITLELDQDG 172
++ S + +A S+I + + L+D IG + E E + KI E+
Sbjct: 60 -VSDSNFLTLAPFSKIQSGELNPHMLVDAIGQIITVGELEELEANNKPTTKIDFEI---- 114
Query: 173 IHNVYGATKILFNPAIDEATKIRERNDPASQVLSQLQDSGMIYVEEDLLRQTDGKTIEQI 232
+DE ++ A QV Q+S Q G T
Sbjct: 115 ------------RDQMDERMQVTLWGTYAQQVYRACQESEGKNSHVLRWLQLKGLTTVST 162
Query: 233 KDLTEKSYCV----VLGTMKYIPDGMDWYYPACK-CSKKVYPADG------------MYF 275
+ + K C+ VL T+ I WYY CK C+KKV ++
Sbjct: 163 QGIPLK-ICLARLRVLCTIYAIDTDWAWYYINCKTCNKKVNHIHAGVNGVNNKGKKPRFW 221
Query: 276 CEACNRHVASPLYKFRIQLRVMNSKNTATFVLFDQEANSVVKKPCAILVDASNKAGPDSP 335
CE C V + V++S A +LFD + ++ + +++ S D
Sbjct: 222 CETCKSFVTN----------VVSSTGEAKLLLFDSICSEIIGEYATSVLNGSVDEIEDPE 271
Query: 336 NVPSDILDLIDRTFLFKIEVSNSSNSIYEPSYRVKK 371
++P + +LI +TFLF + V + S + Y+V K
Sbjct: 272 DLPDSVKNLISKTFLFLVWVEKDNISDGKEIYKVSK 307
>gb|AAP52633.1| putative replication protein [Oryza sativa (japonica
cultivar-group)] gi|37532088|ref|NP_920346.1| putative
replication protein [Oryza sativa (japonica
cultivar-group)]
Length = 276
Score = 72.8 bits (177), Expect = 3e-11
Identities = 56/182 (30%), Positives = 88/182 (47%), Gaps = 6/182 (3%)
Query: 20 IVAKVQRLWLSPSLYGSKLPFSLDMVLVDSKGDKIHATVRKTLIYRFQSLLTEGRVYQIS 79
++A+V RLW + + +D+VLVD KG IHA + LI F+ LL EG+VY +
Sbjct: 18 LLARVSRLWEFTDCKDATKIYHIDLVLVDEKGGSIHAQIFPPLIQVFKPLLAEGKVYYLD 77
Query: 80 FFGVGESGRDFRTTGHAFKINFQIHTFVCVVTNTPINHSP--YSFMAISEIM-FNDPDAS 136
+ V S + +R + + F T V + P N YS ++E+ F D + S
Sbjct: 78 SYRVKTSNKSYRPVANPLMMTFTKWTSVEQCLDVPFNFPTVVYSLTPLNEVSNFVDKNES 137
Query: 137 FLIDVIGILTGASGEHEF--EKDGVSQKKITLELDQDGIHNVYGATKILFNPAIDEATKI 194
F +DVIG +T S + VS K T+++ I + K+L PA + A +I
Sbjct: 138 F-VDVIGFITEISTPTMLRPKSRDVSSLKRTVQICDTKIGANFQPIKLLQAPATNIADEI 196
Query: 195 RE 196
+
Sbjct: 197 AD 198
>emb|CAB91582.1| putative protein [Arabidopsis thaliana]
gi|15228455|ref|NP_189797.1| hypothetical protein
[Arabidopsis thaliana] gi|11288415|pir||T48966
hypothetical protein F4M19.70 - Arabidopsis thaliana
Length = 448
Score = 69.3 bits (168), Expect = 3e-10
Identities = 69/278 (24%), Positives = 118/278 (41%), Gaps = 41/278 (14%)
Query: 173 IHNVYGATKILFNPAIDEATKIRER--NDPASQVLSQLQDSGMIYVEEDL-----LRQTD 225
+ N + T++ NP EA ++ +D S + + Q + V +D+ LR +
Sbjct: 139 LSNSFDVTQVHVNPPSSEAVFFQQALPSDGLSLISRERQPRWEMVVNKDVDWLDYLRNS- 197
Query: 226 GKTIEQIKDLTEKSYCVVLGTMKYIPDGMDWYYPACK-CSKKVYPADG------------ 272
I +K E VL T+ I WYY +CK C+KKV
Sbjct: 198 ---ISDLKCSIEIGKARVLCTIYAIDTDWAWYYISCKTCNKKVNHIHAGVHGVNNKGKKP 254
Query: 273 MYFCEACNRHVASPLYKFRIQLRVMNSKNTATFVLFDQEANSVVKKPCAILVDASNKAGP 332
++C+ C V + + ++ + VM++ A F+LFD + + + ++D S
Sbjct: 255 RFWCDTCKTVVTNVIPRYMLYANVMDNTGEAKFLLFDSICSELTGESATSVLDGSLDEVV 314
Query: 333 DSPNVPSDILDLIDRTFLFKIEVSNSSNSIYEPSYRV-KKFC-----------YDPEIIN 380
D N+P + +LI +TFLF + V S + Y+V K C Y +I+N
Sbjct: 315 DPENLPEPVKNLIGKTFLFLVWVEKEHISDGKEVYKVWKVLCKGGLLEEQLLEYSADIVN 374
Query: 381 QF---ISNSPHLMYDESNPFYFLATPTSVLKQESINPE 415
++ P LM + S+ TP+S K+ NP+
Sbjct: 375 PASIESADQPQLMLENSHDTSDFGTPSS--KRIYANPD 410
>gb|AAX95750.1| Eukaryotic protein of unknown function (DUF889), putative [Oryza
sativa (japonica cultivar-group)]
Length = 1806
Score = 69.3 bits (168), Expect = 3e-10
Identities = 45/133 (33%), Positives = 68/133 (50%), Gaps = 4/133 (3%)
Query: 20 IVAKVQRLWLSPSLYGSKLPFSLDMVLVDSKGDKIHATVRKTLIYRFQSLLTEGRVYQIS 79
++A+V RLW + + +D+VLVD KG IHA + LI F+ LL EG+VY +
Sbjct: 1332 LLARVSRLWEFTDCKDATKIYHIDLVLVDEKGGSIHAQIFPPLIQVFKPLLAEGKVYYLD 1391
Query: 80 FFGVGESGRDFRTTGHAFKINFQIHTFVCVVTNTPINHSP--YSFMAISEIM-FNDPDAS 136
+ V S + +R + + F T V + P N YS ++E+ F D + S
Sbjct: 1392 SYRVKTSNKSYRPVANPLMMTFTKWTSVEQCLDVPFNFPTVVYSLTPLNEVSNFVDKNES 1451
Query: 137 FLIDVIGILTGAS 149
F +DVIG +T S
Sbjct: 1452 F-VDVIGFITEIS 1463
>ref|NP_850486.1| expressed protein [Arabidopsis thaliana]
Length = 394
Score = 68.2 bits (165), Expect = 7e-10
Identities = 33/104 (31%), Positives = 56/104 (53%)
Query: 4 KIYVISTINPSKETWNIVAKVQRLWLSPSLYGSKLPFSLDMVLVDSKGDKIHATVRKTLI 63
+I +S ++ T + ++ RLW K +D++LVD KG++I A++R L+
Sbjct: 4 EITPVSQLHSHLSTCKVKVRIARLWAYHKKDRPKDIMGIDLLLVDDKGERIQASIRSQLL 63
Query: 64 YRFQSLLTEGRVYQISFFGVGESGRDFRTTGHAFKINFQIHTFV 107
+FQ L EG Y I F + ++G +R + H +KINF T +
Sbjct: 64 SKFQEKLEEGDCYMIMNFEISDNGGSYRASSHPYKINFMSMTHI 107
Score = 58.9 bits (141), Expect = 4e-07
Identities = 49/192 (25%), Positives = 87/192 (44%), Gaps = 18/192 (9%)
Query: 272 GMYFCEACNRHVASPLYKFRIQLRVMNSKNTATFVLFDQEANSVVKKPCAILVDASNKAG 331
G Y CE C+ V + R+Q+ V++ A+F+LFDQ+ ++ K L++ +
Sbjct: 174 GKYECEKCDTFVTTT--STRVQVTVLDHTGEASFLLFDQDVIKLIHKSAYELLEQQVQFN 231
Query: 332 PDSPNVPSDILDLIDRTFLFKIEVSNSSNSIYEPSYRVKKFCYDPEIINQFISNSPHLMY 391
S +P ++LDL R F+F I+ S+S+ +RV + PEI+ +F N L
Sbjct: 232 R-SDKIPQELLDLEGRQFVFTIQGSDSTKFSRPSIFRVYELTDKPEIVQKFQENL--LQM 288
Query: 392 DESNPFYFLATPTSVLKQESINPEISKDLNVEFAVAGELPNTDSPPASAVDLGCDTQNLS 451
+ ++P + + S P+ D+N+ S P++A DT++
Sbjct: 289 NTTDPNTHMVSSFSNSTTSETEPD--SDMNIV-----------STPSNATTNQIDTESSE 335
Query: 452 FDGGSSDMSGIK 463
+ S IK
Sbjct: 336 AANYENSNSSIK 347
>dbj|BAB10788.1| replication protein A1-like [Arabidopsis thaliana]
gi|3695387|gb|AAC62789.1| contains similarity to
replication protein A1 [Arabidopsis thaliana]
gi|7487549|pir||T01955 hypothetical protein T2L5.8 -
Arabidopsis thaliana
Length = 1073
Score = 67.4 bits (163), Expect = 1e-09
Identities = 56/215 (26%), Positives = 96/215 (44%), Gaps = 16/215 (7%)
Query: 173 IHNVYGATKILFNPAIDEATKIRER--NDPASQVL-SQLQDSGMIYVEEDLLRQTDGKTI 229
+ N + A+++ NP EA + ND A V +++ M+ V+ TI
Sbjct: 191 LSNSFDASQVHVNPDFPEAHHFSQTLPNDGAICVYRTRVPRFEMVAVKRIDYSVYTRNTI 250
Query: 230 EQIKDLTEKSYCVVLGTMKYIPDGMDWYYPACK-CSKKVYPADG------------MYFC 276
E + TE VL T+ I WYY +CK C+KKV ++C
Sbjct: 251 EDLLSSTEVGKVRVLCTIYAIDTDWAWYYISCKTCNKKVNHIHAGVNGVNNKGKKPKFWC 310
Query: 277 EACNRHVASPLYKFRIQLRVMNSKNTATFVLFDQEANSVVKKPCAILVDASNKAGPDSPN 336
+ C V + + ++ I +VM+S + A VLFD ++ + +++ S D +
Sbjct: 311 DTCKSVVTNVVSRYMIYAKVMDSTSEAKLVLFDSICFEIIGESATSVLNGSVNEIEDPED 370
Query: 337 VPSDILDLIDRTFLFKIEVSNSSNSIYEPSYRVKK 371
+P + +LI +TFLF + V + S + Y+V K
Sbjct: 371 LPDSVKNLIGKTFLFLVWVEKDNISDGKEIYKVSK 405
Score = 47.0 bits (110), Expect = 0.002
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 54 IHATVRKTLIYRFQSLLTEGRVYQISFFGVGESGRDFRTTGHAFKINFQIHTFVCVVTNT 113
+HATV+K L+ +F L G I F + + FR T H +K+ FQ+ T V +
Sbjct: 1 MHATVKKELVSKFVHKLIVGEWVFIEIFRLTYASSQFRPTNHLYKMAFQVRTEVMGCAS- 59
Query: 114 PINHSPYSFMA-ISEIMFNDPDASFLIDVIGILTGASGEHEFEKDGVSQKKITLEL 168
++ S + +A S+I + + L+D IG + E E + KI E+
Sbjct: 60 -VSDSNFLTLAPFSKIQSGELNPHMLVDAIGQIITVGELEELEANNKPTTKIDFEI 114
>ref|NP_198346.1| hypothetical protein [Arabidopsis thaliana]
Length = 1033
Score = 67.4 bits (163), Expect = 1e-09
Identities = 56/215 (26%), Positives = 96/215 (44%), Gaps = 16/215 (7%)
Query: 173 IHNVYGATKILFNPAIDEATKIRER--NDPASQVL-SQLQDSGMIYVEEDLLRQTDGKTI 229
+ N + A+++ NP EA + ND A V +++ M+ V+ TI
Sbjct: 191 LSNSFDASQVHVNPDFPEAHHFSQTLPNDGAICVYRTRVPRFEMVAVKRIDYSVYTRNTI 250
Query: 230 EQIKDLTEKSYCVVLGTMKYIPDGMDWYYPACK-CSKKVYPADG------------MYFC 276
E + TE VL T+ I WYY +CK C+KKV ++C
Sbjct: 251 EDLLSSTEVGKVRVLCTIYAIDTDWAWYYISCKTCNKKVNHIHAGVNGVNNKGKKPKFWC 310
Query: 277 EACNRHVASPLYKFRIQLRVMNSKNTATFVLFDQEANSVVKKPCAILVDASNKAGPDSPN 336
+ C V + + ++ I +VM+S + A VLFD ++ + +++ S D +
Sbjct: 311 DTCKSVVTNVVSRYMIYAKVMDSTSEAKLVLFDSICFEIIGESATSVLNGSVNEIEDPED 370
Query: 337 VPSDILDLIDRTFLFKIEVSNSSNSIYEPSYRVKK 371
+P + +LI +TFLF + V + S + Y+V K
Sbjct: 371 LPDSVKNLIGKTFLFLVWVEKDNISDGKEIYKVSK 405
Score = 47.0 bits (110), Expect = 0.002
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 54 IHATVRKTLIYRFQSLLTEGRVYQISFFGVGESGRDFRTTGHAFKINFQIHTFVCVVTNT 113
+HATV+K L+ +F L G I F + + FR T H +K+ FQ+ T V +
Sbjct: 1 MHATVKKELVSKFVHKLIVGEWVFIEIFRLTYASSQFRPTNHLYKMAFQVRTEVMGCAS- 59
Query: 114 PINHSPYSFMA-ISEIMFNDPDASFLIDVIGILTGASGEHEFEKDGVSQKKITLEL 168
++ S + +A S+I + + L+D IG + E E + KI E+
Sbjct: 60 -VSDSNFLTLAPFSKIQSGELNPHMLVDAIGQIITVGELEELEANNKPTTKIDFEI 114
>gb|AAC95163.1| putative replication protein A1 [Arabidopsis thaliana]
gi|15224998|ref|NP_178643.1| hypothetical protein
[Arabidopsis thaliana] gi|25352478|pir||C84472 probable
replication protein A1 [imported] - Arabidopsis thaliana
Length = 238
Score = 63.5 bits (153), Expect = 2e-08
Identities = 43/139 (30%), Positives = 70/139 (49%), Gaps = 6/139 (4%)
Query: 8 ISTINPSKETWNIVAKVQRLWLSPSLYGSKLPFSLDMVLVDSKGDKIHATVRKTLIYRFQ 67
+S + S W I +V R +L + SK+ + ++L D G I ATV + ++
Sbjct: 7 LSLLKSSIRGWCIRGRVVRTFLVSLVPSSKV---MGLILADEHGMTIEATVGYKMSDHYK 63
Query: 68 SLLTEGRVYQISFFGVGESGRDFRTTGHAFKINFQIHTFVCVVTNTP-INHSPYSFMAIS 126
+ EG I+ FGV E+ R T H+FKI F + T V + + P I H Y + S
Sbjct: 64 DFINEGEWVTITNFGVVENSGSVRATTHSFKIGFSVDTVVRLTSPVPAIPH--YRLASFS 121
Query: 127 EIMFNDPDASFLIDVIGIL 145
I+ ++ D S L+D++G +
Sbjct: 122 SIIDDEIDKSVLVDLVGAI 140
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.315 0.134 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 997,341,019
Number of Sequences: 2540612
Number of extensions: 43764194
Number of successful extensions: 114815
Number of sequences better than 10.0: 193
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 114566
Number of HSP's gapped (non-prelim): 267
length of query: 569
length of database: 863,360,394
effective HSP length: 133
effective length of query: 436
effective length of database: 525,458,998
effective search space: 229100123128
effective search space used: 229100123128
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 78 (34.7 bits)
Lotus: description of TM0346.9