BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0346.11
(564 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ65193.1| At5g58760 [Arabidopsis thaliana] gi|42568637|ref|... 789 0.0
dbj|BAA97344.1| unnamed protein product [Arabidopsis thaliana] 777 0.0
ref|NP_909200.1| UV-damaged DNA binding protein 2 [Oryza sativa ... 714 0.0
dbj|BAC75824.1| UV-damaged DNA binding protein 2 [Oryza sativa (... 709 0.0
emb|CAF95721.1| unnamed protein product [Tetraodon nigroviridis] 169 2e-40
emb|CAG32076.1| hypothetical protein [Gallus gallus] 164 9e-39
gb|AAH80928.1| Ddb2-prov protein [Xenopus tropicalis] gi|5611849... 162 3e-38
ref|XP_421110.1| PREDICTED: similar to damage-specific DNA bindi... 155 3e-36
pir||I38909 damage-specific DNA binding protein 2 - human 147 7e-34
gb|AAK16810.1| damage-specific DNA-binding protein 2 [Mus muscul... 145 3e-33
gb|AAP35803.1| damage-specific DNA binding protein 2, 48kDa [Hom... 145 4e-33
gb|AAP36872.1| Homo sapiens damage-specific DNA binding protein ... 145 4e-33
ref|XP_242065.3| PREDICTED: similar to damage-specific DNA-bindi... 136 2e-30
dbj|BAD12559.1| damage-specific DNA binding protein 2 splicing v... 127 9e-28
ref|XP_230512.2| PREDICTED: similar to hypothetical protein FLJ1... 116 2e-24
gb|AAH94676.1| 5830411K18Rik protein [Mus musculus] gi|63492305|... 113 1e-23
ref|XP_597573.1| PREDICTED: similar to DNA damage binding protei... 107 8e-22
ref|XP_544653.1| PREDICTED: similar to hypothetical protein FLJ1... 105 4e-21
dbj|BAB14369.1| unnamed protein product [Homo sapiens] gi|133763... 102 4e-20
ref|XP_523063.1| PREDICTED: hypothetical protein XP_523063 [Pan ... 100 2e-19
>gb|AAQ65193.1| At5g58760 [Arabidopsis thaliana] gi|42568637|ref|NP_200684.2|
transducin family protein / WD-40 repeat family protein
[Arabidopsis thaliana] gi|51968390|dbj|BAD42887.1|
putative protein [Arabidopsis thaliana]
Length = 557
Score = 789 bits (2037), Expect = 0.0
Identities = 378/560 (67%), Positives = 465/560 (82%), Gaps = 16/560 (2%)
Query: 5 TRRVPFPKVVIERDTDSEQSSSEEEEEALEDDEEEALEHEQEEENGVAEIGKNEKLEVGL 64
+RR P++VI RDTDSE SSSEEEEE E+D E E+E+E V GK E L
Sbjct: 6 SRRKRDPEIVIARDTDSELSSSEEEEE--EEDNYPFSESEEEDE-AVKNGGKIE-----L 57
Query: 65 DANR-KGKTPITLPL-RKVCKVCKKPGHESGFKGATYIDCPMKPCFLCKTPGHTTLTCPH 122
+ N+ KGK PIT+ L +KVCKVCK+PGHE+GFKGATYIDCPMKPCFLCK PGHTT++CPH
Sbjct: 58 EKNKAKGKAPITVKLIKKVCKVCKQPGHEAGFKGATYIDCPMKPCFLCKMPGHTTMSCPH 117
Query: 123 RFSTEHGVVPAPRKKTCKPFEYVFERQLRPGIPSIKPKYVIPDQVNCAVIRYHSRRITCL 182
R T+HG++P + T P ++VF+RQL+P IP IKPKYVIPDQV+CAVIRYHSRR+TCL
Sbjct: 118 RVVTDHGILPTSHRNTKNPIDFVFKRQLQPRIPPIKPKYVIPDQVHCAVIRYHSRRVTCL 177
Query: 183 EFHPTKNNIILSGDKKGQLGVWDFVRVHEKVVYGNIHSCLLNNMKFNPTNDCMVYSASSD 242
EFHPTKNNI+LSGDKKGQ+GVWDF +V+EK VYGNIHS +NNM+F+PTND MVYSASSD
Sbjct: 178 EFHPTKNNILLSGDKKGQIGVWDFGKVYEKNVYGNIHSVQVNNMRFSPTNDDMVYSASSD 237
Query: 243 GTISFTDLETGISSSLMNLNPEGWQGPSTWKMLYGMDINSEKGLVLVADNFGFLHLVDMR 302
GTI +TDLETG SS+L+NLNP+GWQG ++WKMLYGMDINSEKG+VL ADNFGFLH++D R
Sbjct: 238 GTIGYTDLETGTSSTLLNLNPDGWQGANSWKMLYGMDINSEKGVVLAADNFGFLHMIDHR 297
Query: 303 SNNKTGNAILIHKKNTKVVGIHCNPIEPDILLTCGNDHYARVWDIRRMETGSSIYDLKHN 362
+NN TG ILIHK+ +KV G+ CNP++P++LL+CGNDH+AR+WD+R+++ +S++DL H
Sbjct: 298 TNNSTGEPILIHKQGSKVCGLDCNPVQPELLLSCGNDHFARIWDMRKLQPKASLHDLAHK 357
Query: 363 RVVSSAYFSPVSGNKILTTSLDNRLRVWDSIFGKMDSPSREIVHSHDFNRYLTPFKAEWD 422
RVV+SAYFSP SG KILTT DNR+R+WDSIFG +D PSREIVHS+DFNR+LTPFKAEWD
Sbjct: 358 RVVNSAYFSPSSGTKILTTCQDNRIRIWDSIFGNLDLPSREIVHSNDFNRHLTPFKAEWD 417
Query: 423 PKDPSESLAVVGRYISENYNGAALHPIDFIDVSTGKLVAEVMDPNITTISPVNKLHPNDD 482
PKD SESL V+GRYISENYNG ALHPIDFID S G+LVAEVMDPNITTI+PVNKLHP DD
Sbjct: 418 PKDTSESLIVIGRYISENYNGTALHPIDFIDASNGQLVAEVMDPNITTITPVNKLHPRDD 477
Query: 483 ILASGSSSSLFIWKPKEKSEPVHEKDESKIVVCGRAEKKRGK--KRGADTDESDNEGFNS 540
+LASGSS SLFIW+P++ +E V EK + KI++C KK+GK KRG+D ++ +++ F+S
Sbjct: 478 VLASGSSRSLFIWRPQDNTEMVEEKKDKKIIICYGDSKKKGKKQKRGSDDEDDEDDIFSS 537
Query: 541 K---LKKSKFQ-KTSKSQKT 556
K +K +K+Q KT+K KT
Sbjct: 538 KGKNIKVNKYQAKTTKKTKT 557
>dbj|BAA97344.1| unnamed protein product [Arabidopsis thaliana]
Length = 576
Score = 777 bits (2007), Expect = 0.0
Identities = 378/579 (65%), Positives = 465/579 (80%), Gaps = 35/579 (6%)
Query: 5 TRRVPFPKVVIERDTDSEQSSSEEEEEALEDDEEEALEHEQEEENGVAEIGKNEKLEVGL 64
+RR P++VI RDTDSE SSSEEEEE E+D E E+E+E V GK E L
Sbjct: 6 SRRKRDPEIVIARDTDSELSSSEEEEE--EEDNYPFSESEEEDE-AVKNGGKIE-----L 57
Query: 65 DANR-KGKTPITLPL-RKVCKVCKKPGHESGFKGATYIDCPMKPCFLCKTPG-------- 114
+ N+ KGK PIT+ L +KVCKVCK+PGHE+GFKGATYIDCPMKPCFLCK PG
Sbjct: 58 EKNKAKGKAPITVKLIKKVCKVCKQPGHEAGFKGATYIDCPMKPCFLCKMPGKAPAISYR 117
Query: 115 -----------HTTLTCPHRFSTEHGVVPAPRKKTCKPFEYVFERQLRPGIPSIKPKYVI 163
HTT++CPHR T+HG++P + T P ++VF+RQL+P IP IKPKYVI
Sbjct: 118 FLLTCELFDDGHTTMSCPHRVVTDHGILPTSHRNTKNPIDFVFKRQLQPRIPPIKPKYVI 177
Query: 164 PDQVNCAVIRYHSRRITCLEFHPTKNNIILSGDKKGQLGVWDFVRVHEKVVYGNIHSCLL 223
PDQV+CAVIRYHSRR+TCLEFHPTKNNI+LSGDKKGQ+GVWDF +V+EK VYGNIHS +
Sbjct: 178 PDQVHCAVIRYHSRRVTCLEFHPTKNNILLSGDKKGQIGVWDFGKVYEKNVYGNIHSVQV 237
Query: 224 NNMKFNPTNDCMVYSASSDGTISFTDLETGISSSLMNLNPEGWQGPSTWKMLYGMDINSE 283
NNM+F+PTND MVYSASSDGTI +TDLETG SS+L+NLNP+GWQG ++WKMLYGMDINSE
Sbjct: 238 NNMRFSPTNDDMVYSASSDGTIGYTDLETGTSSTLLNLNPDGWQGANSWKMLYGMDINSE 297
Query: 284 KGLVLVADNFGFLHLVDMRSNNKTGNAILIHKKNTKVVGIHCNPIEPDILLTCGNDHYAR 343
KG+VL ADNFGFLH++D R+NN TG ILIHK+ +KV G+ CNP++P++LL+CGNDH+AR
Sbjct: 298 KGVVLAADNFGFLHMIDHRTNNSTGEPILIHKQGSKVCGLDCNPVQPELLLSCGNDHFAR 357
Query: 344 VWDIRRMETGSSIYDLKHNRVVSSAYFSPVSGNKILTTSLDNRLRVWDSIFGKMDSPSRE 403
+WD+R+++ +S++DL H RVV+SAYFSP SG KILTT DNR+R+WDSIFG +D PSRE
Sbjct: 358 IWDMRKLQPKASLHDLAHKRVVNSAYFSPSSGTKILTTCQDNRIRIWDSIFGNLDLPSRE 417
Query: 404 IVHSHDFNRYLTPFKAEWDPKDPSESLAVVGRYISENYNGAALHPIDFIDVSTGKLVAEV 463
IVHS+DFNR+LTPFKAEWDPKD SESL V+GRYISENYNG ALHPIDFID S G+LVAEV
Sbjct: 418 IVHSNDFNRHLTPFKAEWDPKDTSESLIVIGRYISENYNGTALHPIDFIDASNGQLVAEV 477
Query: 464 MDPNITTISPVNKLHPNDDILASGSSSSLFIWKPKEKSEPVHEKDESKIVVCGRAEKKRG 523
MDPNITTI+PVNKLHP DD+LASGSS SLFIW+P++ +E V EK + KI++C KK+G
Sbjct: 478 MDPNITTITPVNKLHPRDDVLASGSSRSLFIWRPQDNTEMVEEKKDKKIIICYGDSKKKG 537
Query: 524 K--KRGADTDESDNEGFNSK---LKKSKFQ-KTSKSQKT 556
K KRG+D ++ +++ F+SK +K +K+Q KT+K KT
Sbjct: 538 KKQKRGSDDEDDEDDIFSSKGKNIKVNKYQAKTTKKTKT 576
>ref|NP_909200.1| UV-damaged DNA binding protein 2 [Oryza sativa (japonica
cultivar-group)] gi|10798819|dbj|BAB16450.1| UV-damaged
DNA binding protein 2 [Oryza sativa (japonica
cultivar-group)]
Length = 583
Score = 714 bits (1843), Expect = 0.0
Identities = 335/553 (60%), Positives = 419/553 (75%), Gaps = 6/553 (1%)
Query: 16 ERDTDSEQSSSEEEEEALEDDEEEALEHEQEEENGVAE-IGKNEKLEVGLDANRKG-KTP 73
E D SSS +E ED EEE +++ AE GK E++ A R G K
Sbjct: 31 EEDQQEASSSSSSSDEGEEDAEEEGSGEVDDDDGEAAEPSGKEEEVSPVAAAARSGRKAS 90
Query: 74 ITLPLRKVCKVCKKPGHESGFKGATYIDCPMKPCFLCKTPGHTTLTCPHRFSTEHGVVPA 133
IT+ L+KVCKVCK GHE+GFKGA YIDCP KPCFLCK PGHTTLTCPHR + EHGV+PA
Sbjct: 91 ITISLKKVCKVCKSTGHEAGFKGAVYIDCPRKPCFLCKMPGHTTLTCPHRVAMEHGVIPA 150
Query: 134 PRKKTCKPFEYVFERQLRPGIPSIKPKYVIPDQVNCAVIRYHSRRITCLEFHPTKNNIIL 193
R+ T +YVF+ Q++ IP +KP+++IP+Q+ C I++H RR+TCLEFHPTKNN++L
Sbjct: 151 SRRNTNTSLDYVFQSQVKGKIPMVKPQFLIPNQLECGNIKFHQRRVTCLEFHPTKNNVLL 210
Query: 194 SGDKKGQLGVWDFVRVHEKVVYGNIHSCLLNNMKFNPTNDCMVYSASSDGTISFTDLETG 253
SGDKKG LGVWD+V++HEK+ Y ++HSC+LN+MKF+ TND ++Y+ASSDGTIS TDL+TG
Sbjct: 211 SGDKKGLLGVWDYVKLHEKITYDSVHSCILNSMKFDTTNDGLLYTASSDGTISSTDLDTG 270
Query: 254 ISSSLMNLNPEGWQGPSTWKMLYGMDINSEKGLVLVADNFGFLHLVDMRSNNKTGNAILI 313
I SSL+NLNP GW GPSTW+M+YGMD NS+KGL+LVAD+FGFLHL+D R + G+ ILI
Sbjct: 271 IGSSLLNLNPNGWNGPSTWRMIYGMDFNSDKGLLLVADSFGFLHLLDRRLKARIGDPILI 330
Query: 314 HKKNTKVVGIHCNPIEPDILLTCGNDHYARVWDIRRMETGSSIYDLKHNRVVSSAYFSPV 373
HKK +KV +HCNP +P++LL+ GNDHYAR+WD R++E S+ L H RVV+S YFSP
Sbjct: 331 HKKGSKVTSLHCNPAQPEVLLSSGNDHYARIWDTRKLEPNSAFVSLAHGRVVNSGYFSPQ 390
Query: 374 SGNKILTTSLDNRLRVWDSIFGKMDSPSREIVHSHDFNRYLTPFKAEWDPKDPSESLAVV 433
SGNKILTT DNR+RVWD IFG ++SPSREIVHSHDFNR+LTPFKAEWDPKD +E++AV+
Sbjct: 391 SGNKILTTCQDNRIRVWDYIFGNLESPSREIVHSHDFNRHLTPFKAEWDPKDHTETVAVI 450
Query: 434 GRYISENYNGAALHPIDFIDVSTGKLVAEVMDPNITTISPVNKLHPNDDILASGSSSSLF 493
GRYISENYNG ALHPIDFID STGKL+AEVMDP+ITTISPVNKLHP DDILASGSS S+F
Sbjct: 451 GRYISENYNGIALHPIDFIDTSTGKLLAEVMDPDITTISPVNKLHPRDDILASGSSRSIF 510
Query: 494 IWKPKEKSEPVHEKDESK----IVVCGRAEKKRGKKRGADTDESDNEGFNSKLKKSKFQK 549
IWKPK +S+ E++ K + G +K GK + D+SD K KK+K +
Sbjct: 511 IWKPKTESDATEERNREKAKEFVYGSGSRKKSNGKHENSSDDDSDGSCDGKKKKKAKKTR 570
Query: 550 TSKSQKTKWKLSI 562
+ + K K K +
Sbjct: 571 FTHTIKGKGKSKV 583
>dbj|BAC75824.1| UV-damaged DNA binding protein 2 [Oryza sativa (japonica
cultivar-group)]
Length = 584
Score = 709 bits (1831), Expect = 0.0
Identities = 335/554 (60%), Positives = 419/554 (75%), Gaps = 7/554 (1%)
Query: 16 ERDTDSEQSSSEEEEEALEDDEEEALEHEQEEENGVAE-IGKNEKLEVGLDANRKG-KTP 73
E D SSS +E ED EEE +++ AE GK E++ A R G K
Sbjct: 31 EEDQQEASSSSSSSDEGEEDAEEEGSGEVDDDDGEAAEPSGKEEEVSPVAAAARSGRKAS 90
Query: 74 ITLPLRKVCKVCKKPGHESGFKGATYIDCPMKPCFLCKTPG-HTTLTCPHRFSTEHGVVP 132
IT+ L+KVCKVCK GHE+GFKGA YIDCP KPCFLCK PG HTTLTCPHR + EHGV+P
Sbjct: 91 ITISLKKVCKVCKSTGHEAGFKGAVYIDCPRKPCFLCKMPGGHTTLTCPHRVAMEHGVIP 150
Query: 133 APRKKTCKPFEYVFERQLRPGIPSIKPKYVIPDQVNCAVIRYHSRRITCLEFHPTKNNII 192
A R+ T +YVF+ Q++ IP +KP+++IP+Q+ C I++H RR+TCLEFHPTKNN++
Sbjct: 151 ASRRNTNTSLDYVFQSQVKGKIPMVKPQFLIPNQLECGNIKFHQRRVTCLEFHPTKNNVL 210
Query: 193 LSGDKKGQLGVWDFVRVHEKVVYGNIHSCLLNNMKFNPTNDCMVYSASSDGTISFTDLET 252
LSGDKKG LGVWD+V++HEK+ Y ++HSC+LN+MKF+ TND ++Y+ASSDGTIS TDL+T
Sbjct: 211 LSGDKKGLLGVWDYVKLHEKITYDSVHSCILNSMKFDTTNDGLLYTASSDGTISSTDLDT 270
Query: 253 GISSSLMNLNPEGWQGPSTWKMLYGMDINSEKGLVLVADNFGFLHLVDMRSNNKTGNAIL 312
GI SSL+NLNP GW GPSTW+M+YGMD NS+KGL+LVAD+FGFLHL+D R + G+ IL
Sbjct: 271 GIGSSLLNLNPNGWNGPSTWRMIYGMDFNSDKGLLLVADSFGFLHLLDRRLKARIGDPIL 330
Query: 313 IHKKNTKVVGIHCNPIEPDILLTCGNDHYARVWDIRRMETGSSIYDLKHNRVVSSAYFSP 372
IHKK +KV +HCNP +P++LL+ GNDHYAR+WD R++E S+ L H RVV+S YFSP
Sbjct: 331 IHKKGSKVTSLHCNPAQPEVLLSSGNDHYARIWDTRKLEPNSAFVSLAHGRVVNSGYFSP 390
Query: 373 VSGNKILTTSLDNRLRVWDSIFGKMDSPSREIVHSHDFNRYLTPFKAEWDPKDPSESLAV 432
SGNKILTT DNR+RVWD IFG ++SPSREIVHSHDFNR+LTPFKAEWDPKD +E++AV
Sbjct: 391 QSGNKILTTCQDNRIRVWDYIFGNLESPSREIVHSHDFNRHLTPFKAEWDPKDHTETVAV 450
Query: 433 VGRYISENYNGAALHPIDFIDVSTGKLVAEVMDPNITTISPVNKLHPNDDILASGSSSSL 492
+GRYISENYNG ALHPIDFID STGKL+AEVMDP+ITTISPVNKLHP DDILASGSS S+
Sbjct: 451 IGRYISENYNGIALHPIDFIDTSTGKLLAEVMDPDITTISPVNKLHPRDDILASGSSRSI 510
Query: 493 FIWKPKEKSEPVHEKDESK----IVVCGRAEKKRGKKRGADTDESDNEGFNSKLKKSKFQ 548
FIWKPK +S+ E++ K + G +K GK + D+SD K KK+K
Sbjct: 511 FIWKPKTESDATEERNREKAKEFVYGSGSRKKSNGKHENSSDDDSDGSCDGKKKKKAKKT 570
Query: 549 KTSKSQKTKWKLSI 562
+ + + K K K +
Sbjct: 571 RFTHTIKGKGKSKV 584
>emb|CAF95721.1| unnamed protein product [Tetraodon nigroviridis]
Length = 485
Score = 169 bits (428), Expect = 2e-40
Identities = 112/386 (29%), Positives = 187/386 (48%), Gaps = 19/386 (4%)
Query: 177 RRITCLEFHPTKNNIILSGDKKGQLGVWDFVR-VHEKVVYGNIHSCLLNNMKFNPTNDCM 235
RR+TCLE+HPT+ + + K G L +WD++R + GN + MKF P +
Sbjct: 98 RRVTCLEWHPTRPTTLAAASKGGDLYLWDYMRPAKANFIQGNGAGDSIGGMKFCPMDPSK 157
Query: 236 VYSASSDGTISFTDLETGISSSLMNLNPEGWQGPSTWKMLYGMDINSEKGLVLVADNFGF 295
+Y AS +G + E G + +++ N + + +D++ + +++ DN G
Sbjct: 158 IYVASGEGRLDLMSFE-GCTPTVLATNVDSYHDNHVCFWFCCVDVSVSRQMLVTGDNVGQ 216
Query: 296 LHLVDMRSNNKTGNAILIHKKN-TKVVGIHCNPIEPDILLTCGNDHYARVWDIRRMETGS 354
L L+ + G I K + KV N +L T DH ++WD+R M+
Sbjct: 217 LLLLSL-----DGQKIFKEKLHKAKVTHAEFNSRCDWLLATASVDHTVKLWDLRNMKDKK 271
Query: 355 S-IYDLKHNRVVSSAYFSPVSGNKILTTSLDNRLRVWDSIFGKMDSPSREIVHSHDFNRY 413
S +++L H + V+SAYF+P+ +K+LTT +++RV+ S +P + I H H ++
Sbjct: 272 SFLHELPHEKAVNSAYFNPLDCSKLLTTDQYDQIRVYSS--SDWSTPQQIIRHPHRHFQH 329
Query: 414 LTPFKAEWDPKDPSESLAVVGRYISENYNGAALHPIDFIDVSTGKLVAEVMDPNITTISP 473
LTP KA W P L V GRY + +D D +T +LV ++ DP + I
Sbjct: 330 LTPIKATWHPV---YDLIVAGRYPDNRICLSDKRTVDLYDANTAELVCQLQDPTVAGIKS 386
Query: 474 VNKLHPNDDILASGSSSSLFIWKPKEKSEPVHEKDESKIVVCGRAEKKRGK---KRGADT 530
+NK +P D++ SG ++ +W E E++E+ + GR RG+ +RG
Sbjct: 387 INKFNPLGDVIGSGMGVTVVLWNRNESLLNQLEEEETSTPMGGRGNHWRGEQPPRRGRGG 446
Query: 531 DESDNEGFNSKLKKSKFQKTSKSQKT 556
D G +K K + +KT KT
Sbjct: 447 PSGD--GKTTKRKLASPEKTGARSKT 470
>emb|CAG32076.1| hypothetical protein [Gallus gallus]
Length = 507
Score = 164 bits (414), Expect = 9e-39
Identities = 119/390 (30%), Positives = 197/390 (50%), Gaps = 28/390 (7%)
Query: 177 RRITCLEFHPTKNNIILSGDKKGQLGVWDF-VRVHEKVVYGNIHSCLLNNMKFNPTNDCM 235
RR+TCLE+HPT + + G K G + +WD+ V + G L ++KF+P
Sbjct: 125 RRVTCLEWHPTHPSTVAVGSKGGDIILWDYEVLTKTCFIKGKGPGDSLGDIKFSPYEAVK 184
Query: 236 VYSASSDGTISFTDLETGISSSLMNLNPE-GWQGPSTWKMLYGMDINSEKGLVLVADNFG 294
+Y AS DGT+S DLE G + +++ P+ G + + +D+++ V+ DN G
Sbjct: 185 LYVASGDGTLSLQDLE-GRAVQVISRAPDCGHENHNVCCWYCSVDVSASCRAVVTGDNLG 243
Query: 295 FLHLVDMRSNNKTGNAILIHKKNTKVVGIHCNPIEPDILLTCGNDHYARVWDIRRMETGS 354
++V + ++ + + +HKK KV + N +L T D ++WD+R ++ +
Sbjct: 244 --NVVLLSTSGEEIWKLKLHKK--KVTHVEFNSRCEWLLATASVDQTVKIWDLRNIKDKA 299
Query: 355 S-IYDLKHNRVVSSAYFSPVSGNKILTTSLDNRLRVWDSIFGKMDSPSREIVHSHDFNRY 413
+ ++ L H++ V++AYFSP G K+L+T N +RV+ P I H H ++
Sbjct: 300 NFLHVLPHDKPVNAAYFSPTDGAKLLSTDQRNEIRVYSC--SDWTKPQHLIPHPHRQFQH 357
Query: 414 LTPFKAEWDPKDPSESLAVVGRYISENYNGAA---LHPIDFIDVSTGKLVAEVMDPNITT 470
LTP KA W P+ L VVGRY + G L +D D +TG++V ++ DPN +
Sbjct: 358 LTPIKATWHPR---YDLIVVGRYPDPKFPGYTVNELRTVDIFDGNTGEMVCQLYDPNASG 414
Query: 471 ISPVNKLHPNDDILASGSSSSLFIWKPKE---KSEPVHEKDESKIVVCGRAEKKRGKKRG 527
I +NK +P D LASG ++ IW +E K + K ++ + R+ +RG +R
Sbjct: 415 IISLNKFNPMGDTLASGMGFNILIWSREEMVMKKQEHLLKAMTEQGIGSRSLSRRGGQRQ 474
Query: 528 ADTDES---------DNEGFNSKLKKSKFQ 548
A+ S + E +K K SK Q
Sbjct: 475 ANPGTSKLKAKLLSWEVEEMGTKTKDSKSQ 504
>gb|AAH80928.1| Ddb2-prov protein [Xenopus tropicalis]
gi|56118492|ref|NP_001008203.1| ddb2-prov protein
[Xenopus tropicalis]
Length = 501
Score = 162 bits (409), Expect = 3e-38
Identities = 119/393 (30%), Positives = 191/393 (48%), Gaps = 29/393 (7%)
Query: 177 RRITCLEFHPTKNNIILSGDKKGQLGVWDFVRVHEKVVYGNIHSCLLNNMKFNPTNDCMV 236
RR+T LE+HPT N + G K G + +WD+ ++ ++ G + MKF+P N +
Sbjct: 122 RRVTTLEWHPTHPNTVAVGSKGGDIILWDYEELNNTLIPGIGAGGCITGMKFDPFNPNQL 181
Query: 237 YSASSDGTISFTDLETGISSSLMNLNPEGWQGPSTWKMLY-GMDINSEKGLVLVADNFGF 295
Y++S G+ D N + + W M Y +D+++E+ V+ DN G
Sbjct: 182 YTSSVAGSTVLQDFS--------GRNIQTFTNTEDWAMWYCSLDVSAERQCVVTGDNVG- 232
Query: 296 LHLVDMRSNNKTGNAILIHKKNTKVVGIHCNPIEPDILLTCGNDHYARVWDIRRMETGSS 355
++V + + K + +HKK KV + NP +L + D ++WD+R ++ SS
Sbjct: 233 -NVVLLETCGKEIWKLRLHKK--KVTHVEFNPRCDWLLASASVDQTVKLWDLRNIKDKSS 289
Query: 356 -IYDLKHNRVVSSAYFSPVSGNKILTTSLDNRLRVWDSIFGKMDSPSREIVHSHDFNRYL 414
+Y L H R V+SAYFSP G K+LTT + +RV+ + P I H H ++L
Sbjct: 290 YLYTLPHARGVNSAYFSPWDGAKLLTTDQHSEIRVYSAC--DWAKPQHIIPHPHRQFQHL 347
Query: 415 TPFKAEWDPKDPSESLAVVGRY---ISENYNGAALHPIDFIDVSTGKLVAEVMDPNITTI 471
T KA W P+ L VVGRY + Y L +D D G +V ++ DP + I
Sbjct: 348 TAIKATWHPR---YDLIVVGRYPDPLFPGYMSDELRTVDVFDGQKGNIVCQLYDPYASGI 404
Query: 472 SPVNKLHPNDDILASGSSSSLFIWKPK----EKSEPVHEKDESKIVVCGRAE--KKRGKK 525
+NK +P D+LASG ++ IW + K E + + K V GR E R
Sbjct: 405 VSLNKFNPMGDLLASGMGFNILIWSREILLMMKQEEMMKALREKGVSVGRKELPNSRLPH 464
Query: 526 RGADTDESDNEGFNSKLKKSK-FQKTSKSQKTK 557
A ++ N+G ++ K++ +++SK K K
Sbjct: 465 SSAPREKPGNKGSTTESSKTRTVRESSKRGKHK 497
>ref|XP_421110.1| PREDICTED: similar to damage-specific DNA binding protein 2 - human
[Gallus gallus]
Length = 512
Score = 155 bits (392), Expect = 3e-36
Identities = 112/376 (29%), Positives = 185/376 (48%), Gaps = 32/376 (8%)
Query: 177 RRITCLEFHPTKNNIILSGDKKGQLGVWDF-VRVHEKVVYGNIHSCLLNNMKFNPTNDCM 235
RR+TCLE+HPT + + G K G + +WD+ V + G + MKFNP N
Sbjct: 125 RRVTCLEWHPTHPSTVAVGSKGGDIILWDYEVLTKTCFIKGMGAGGAITGMKFNPFNPSQ 184
Query: 236 VYSASSDGTISFTDLETGISSSLMNLNPEGWQGPSTWKMLY-GMDINSEKGLVLVADNFG 294
+Y++S G+ + D G +S + + W Y +D+++ V+ DN G
Sbjct: 185 LYTSSVAGSTTLQDFN-GNTSRVFTIT-------ENWDCWYCSVDVSASCRAVVTGDNLG 236
Query: 295 FLHLVDMRSNNKTGNAILIHKKNTKVVGIHCNPIEPDILLTCGNDHYARVWDIRRMETGS 354
++V + ++ + + +HKK KV + N +L T D ++WD+R ++ +
Sbjct: 237 --NVVLLSTSGEEIWKLKLHKK--KVTHVEFNSRCEWLLATASVDQTVKIWDLRNIKDKA 292
Query: 355 S-IYDLKHNRVVSSAYFSPVSGNKILTTSLDNRLRVWDSIFGKMDSPSREIVHSHDFNRY 413
+ ++ L H++ V++AYFSP G K+L+T N +RV+ P I H H ++
Sbjct: 293 NFLHVLPHDKPVNAAYFSPTDGAKLLSTDQRNEIRVYSC--SDWTKPQHLIPHPHRQFQH 350
Query: 414 LTPFKAEWDPKDPSESLAVVGRYISENYNGAA---LHPIDFIDVSTGKLVAEVMDPNITT 470
LTP KA W P+ L VVGRY + G L +D D +TG++V ++ DPN +
Sbjct: 351 LTPIKATWHPR---YDLIVVGRYPDPKFPGYTVNELRTVDIFDGNTGEMVCQLYDPNASG 407
Query: 471 ISPVNKLHPNDDILASGSSSSLFIWKPKEKSEPVHEKDESKIVVCGRAEKKRGKKRGAD- 529
I +NK +P D LASG ++ IW + E V +K E ++ E+ G + D
Sbjct: 408 IISLNKFNPMGDTLASGMGFNILIW---SREEMVMKKQEH--LLKAMTEQGIGSRTNLDY 462
Query: 530 ---TDESDNEGFNSKL 542
+ + + NSKL
Sbjct: 463 IFRGQKGEEDAENSKL 478
>pir||I38909 damage-specific DNA binding protein 2 - human
Length = 427
Score = 147 bits (372), Expect = 7e-34
Identities = 103/333 (30%), Positives = 166/333 (48%), Gaps = 32/333 (9%)
Query: 177 RRITCLEFHPTKNNIILSGDKKGQLGVWDF-VRVHEKVVYGNIHSCLLNNMKFNPTNDCM 235
RR T L +HPT + + G K G + +W+F ++ + G + +KFNP N
Sbjct: 112 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQ 171
Query: 236 VYSASSDGTISFTDLETGI-----SSSLMNLNPEGWQGPSTWKMLYGMDINSEKGLVLVA 290
Y++S +GT D + I SS +N+ W +D+++ +V+
Sbjct: 172 FYASSMEGTTRLQDFKGNILRVFASSDTINI----------W--FCSLDVSASSRMVVTG 219
Query: 291 DNFGFLHLVDMRSNNKTGNAILIHKKNTKVVGIHCNPIEPDILLTCGNDHYARVWDIRRM 350
DN G + L++M + K + +HKK KV + NP L T D ++WD+R++
Sbjct: 220 DNVGNVILLNM--DGKELWNLRMHKK--KVTHVALNPCCDWFLATASVDQTVKIWDLRQV 275
Query: 351 ETGSS-IYDLKHNRVVSSAYFSPVSGNKILTTSLDNRLRVWDSIFGKMDSPSREIVHSHD 409
+S +Y L H V++A FSP G ++LTT + +RV+ + + D P R I H H
Sbjct: 276 RGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSA--SQWDCPLRLIPHPHR 332
Query: 410 FNRYLTPFKAEWDPKDPSESLAVVGRYISENYNGAA---LHPIDFIDVSTGKLVAEVMDP 466
++LTP KA W P+ +L VVGRY N+ L ID D ++GK++ ++ DP
Sbjct: 333 HFQHLTPIKAAWHPR---YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP 389
Query: 467 NITTISPVNKLHPNDDILASGSSSSLFIWKPKE 499
+ IS +N+ +P D LAS + IW +E
Sbjct: 390 ESSGISSLNEFNPMGDTLASAMGYHILIWSQEE 422
>gb|AAK16810.1| damage-specific DNA-binding protein 2 [Mus musculus]
gi|29150251|ref|NP_082395.2| damage specific DNA binding
protein 2 [Mus musculus]
Length = 432
Score = 145 bits (366), Expect = 3e-33
Identities = 102/338 (30%), Positives = 170/338 (50%), Gaps = 25/338 (7%)
Query: 177 RRITCLEFHPTKNNIILSGDKKGQLGVWDFVRVHEKVVY--GNIHSCLLNNMKFNPTNDC 234
RR T L +HPT + + G K G + +W+F + +K ++ G + +KFN N
Sbjct: 112 RRTTSLAWHPTHPSTLAVGSKGGDIMIWNF-GIKDKPIFLKGIGAGGSITGLKFNHLNTN 170
Query: 235 MVYSASSDGTISFTDLETGISSSLMNLNPEGWQGPSTWKMLYGMDINSEKGLVLVADNFG 294
+++S +GT D + I + N S +D++++ +V+ DN G
Sbjct: 171 QFFASSMEGTTRLQDFKGNILRVYTSSN-------SCKVWFCSLDVSAKSRVVVTGDNMG 223
Query: 295 FLHLVDMRSNNKTGNAILIHKKNTKVVGIHCNPIEPDILLTCGNDHYARVWDIRRMETGS 354
H++ + ++ K + +HKK KV + NP +L T D ++WD+R+++
Sbjct: 224 --HVILLSTDGKELWNLRMHKK--KVAHVALNPCCDWLLATASIDQTVKIWDLRQIKGKD 279
Query: 355 S-IYDLKHNRVVSSAYFSPVSGNKILTTSLDNRLRVWDSIFGKMDSPSREIVHSHDFNRY 413
S +Y L H V++A FSP G ++LTT +N +RV+ + + DSP I H H ++
Sbjct: 280 SFLYSLPHRHPVNAACFSP-DGARLLTTDQNNEIRVYSA--SQWDSPLNLISHPHRHFQH 336
Query: 414 LTPFKAEWDPKDPSESLAVVGRYISENYNGAA---LHPIDFIDVSTGKLVAEVMDPNITT 470
LTP KA W + +L VVGRY N L ID D S+GK++ ++ DP +
Sbjct: 337 LTPIKATWHSR---HNLIVVGRYPDPNLKSCVPYELRTIDVFDGSSGKMMCQLYDPGYSG 393
Query: 471 ISPVNKLHPNDDILASGSSSSLFIWKPKEK-SEPVHEK 507
I+ +N+ +P D LAS + IW +E S+ HE+
Sbjct: 394 ITSLNEFNPMGDTLASTMGYHILIWSQEEDGSQKDHER 431
>gb|AAP35803.1| damage-specific DNA binding protein 2, 48kDa [Homo sapiens]
gi|60655475|gb|AAX32301.1| damage-specific DNA binding
protein 2 [synthetic construct]
gi|27979316|gb|AAO25655.1| damage-specific DNA binding
protein 2, 48kDa [Homo sapiens]
gi|12652689|gb|AAH00093.1| Damage-specific DNA binding
protein 2 (48kD) [Homo sapiens]
gi|12230033|sp|Q92466|DDB2_HUMAN DNA damage binding
protein 2 (Damage-specific DNA binding protein 2) (DDB
p48 subunit) (DDBb) (UV-damaged DNA-binding protein 2)
(UV-DDB 2) gi|1536966|gb|AAB07897.1| DDBb p48
gi|4557515|ref|NP_000098.1| damage-specific DNA binding
protein 2 (48kD) [Homo sapiens]
Length = 427
Score = 145 bits (365), Expect = 4e-33
Identities = 102/333 (30%), Positives = 165/333 (48%), Gaps = 32/333 (9%)
Query: 177 RRITCLEFHPTKNNIILSGDKKGQLGVWDF-VRVHEKVVYGNIHSCLLNNMKFNPTNDCM 235
RR T L +HPT + + G K G + +W+F ++ + G + +KFNP N
Sbjct: 112 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQ 171
Query: 236 VYSASSDGTISFTDLETGI-----SSSLMNLNPEGWQGPSTWKMLYGMDINSEKGLVLVA 290
Y++S +GT D + I SS +N+ W +D+++ +V+
Sbjct: 172 FYASSMEGTTRLQDFKGNILRVFASSDTINI----------W--FCSLDVSASSRMVVTG 219
Query: 291 DNFGFLHLVDMRSNNKTGNAILIHKKNTKVVGIHCNPIEPDILLTCGNDHYARVWDIRRM 350
DN G + L++M + K + +HKK KV + NP L T D ++WD+R++
Sbjct: 220 DNVGNVILLNM--DGKELWNLRMHKK--KVTHVALNPCCDWFLATASVDQTVKIWDLRQV 275
Query: 351 ETGSS-IYDLKHNRVVSSAYFSPVSGNKILTTSLDNRLRVWDSIFGKMDSPSREIVHSHD 409
+S +Y L H V++A FSP G ++LTT + +RV+ + + D P I H H
Sbjct: 276 RGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSA--SQWDCPLGLIPHPHR 332
Query: 410 FNRYLTPFKAEWDPKDPSESLAVVGRYISENYNGAA---LHPIDFIDVSTGKLVAEVMDP 466
++LTP KA W P+ +L VVGRY N+ L ID D ++GK++ ++ DP
Sbjct: 333 HFQHLTPIKAAWHPR---YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP 389
Query: 467 NITTISPVNKLHPNDDILASGSSSSLFIWKPKE 499
+ IS +N+ +P D LAS + IW +E
Sbjct: 390 ESSGISSLNEFNPMGDTLASAMGYHILIWSQEE 422
>gb|AAP36872.1| Homo sapiens damage-specific DNA binding protein 2, 48kDa
[synthetic construct] gi|61372712|gb|AAX43896.1|
damage-specific DNA binding protein 2 [synthetic
construct] gi|61372705|gb|AAX43895.1| damage-specific
DNA binding protein 2 [synthetic construct]
Length = 428
Score = 145 bits (365), Expect = 4e-33
Identities = 102/333 (30%), Positives = 165/333 (48%), Gaps = 32/333 (9%)
Query: 177 RRITCLEFHPTKNNIILSGDKKGQLGVWDF-VRVHEKVVYGNIHSCLLNNMKFNPTNDCM 235
RR T L +HPT + + G K G + +W+F ++ + G + +KFNP N
Sbjct: 112 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQ 171
Query: 236 VYSASSDGTISFTDLETGI-----SSSLMNLNPEGWQGPSTWKMLYGMDINSEKGLVLVA 290
Y++S +GT D + I SS +N+ W +D+++ +V+
Sbjct: 172 FYASSMEGTTRLQDFKGNILRVFASSDTINI----------W--FCSLDVSASSRMVVTG 219
Query: 291 DNFGFLHLVDMRSNNKTGNAILIHKKNTKVVGIHCNPIEPDILLTCGNDHYARVWDIRRM 350
DN G + L++M + K + +HKK KV + NP L T D ++WD+R++
Sbjct: 220 DNVGNVILLNM--DGKELWNLRMHKK--KVTHVALNPCCDWFLATASVDQTVKIWDLRQV 275
Query: 351 ETGSS-IYDLKHNRVVSSAYFSPVSGNKILTTSLDNRLRVWDSIFGKMDSPSREIVHSHD 409
+S +Y L H V++A FSP G ++LTT + +RV+ + + D P I H H
Sbjct: 276 RGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSA--SQWDCPLGLIPHPHR 332
Query: 410 FNRYLTPFKAEWDPKDPSESLAVVGRYISENYNGAA---LHPIDFIDVSTGKLVAEVMDP 466
++LTP KA W P+ +L VVGRY N+ L ID D ++GK++ ++ DP
Sbjct: 333 HFQHLTPIKAAWHPR---YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP 389
Query: 467 NITTISPVNKLHPNDDILASGSSSSLFIWKPKE 499
+ IS +N+ +P D LAS + IW +E
Sbjct: 390 ESSGISSLNEFNPMGDTLASAMGYHILIWSQEE 422
>ref|XP_242065.3| PREDICTED: similar to damage-specific DNA-binding protein 2 [Rattus
norvegicus]
Length = 534
Score = 136 bits (342), Expect = 2e-30
Identities = 96/316 (30%), Positives = 159/316 (49%), Gaps = 24/316 (7%)
Query: 177 RRITCLEFHPTKNNIILSGDKKGQLGVWDFVRVHEKVVY--GNIHSCLLNNMKFNPTNDC 234
RR T L +HPT + + G K G + +W+F + +K ++ G + +KFN N
Sbjct: 180 RRTTSLAWHPTHPSTLAVGSKGGDIMIWNF-GIKDKPIFLKGIGAGGSITGLKFNHLNTN 238
Query: 235 MVYSASSDGTISFTDLETGISSSLMNLNPEGWQGPSTWKMLYGMDINSEKGLVLVADNFG 294
+++S +GT D + I + N S +D++++ +V+ DN G
Sbjct: 239 QFFASSMEGTTRLQDFKGNILRIYTSSN-------SCKVWFCSLDVSAKSRVVVTGDNMG 291
Query: 295 FLHLVDMRSNNKTGNAILIHKKNTKVVGIHCNPIEPDILLTCGNDHYARVWDIRRMETGS 354
H++ ++ K + +HKK KV + NP +L T D ++WD+R+++
Sbjct: 292 --HVILTNTDGKELWNLRMHKK--KVAHVALNPCCDWLLATASIDQTVKIWDLRQIKGKD 347
Query: 355 S-IYDLKHNRVVSSAYFSPVSGNKILTTSLDNRLRVWDSIFGKMDSPSREIVHSHDFNRY 413
S ++ L H V+SA FSP G ++LTT +N +RV+ + + DSP I H H ++
Sbjct: 348 SFLFSLPHRHPVNSACFSP-DGARLLTTDQNNEIRVYSA--SQWDSPLSLISHPHRHFQH 404
Query: 414 LTPFKAEWDPKDPSESLAVVGRYISENYNGAA---LHPIDFIDVSTGKLVAEVMDPNITT 470
LTP KA W + +L VVGRY N L ID D S+GK++ ++ DP +
Sbjct: 405 LTPIKATWHSR---HNLIVVGRYPDPNLKSCVPYELRTIDVFDGSSGKMMCQLYDPGYSG 461
Query: 471 ISPVNKLHPNDDILAS 486
I+ +N+ +P D LAS
Sbjct: 462 ITSLNEFNPMGDTLAS 477
>dbj|BAD12559.1| damage-specific DNA binding protein 2 splicing variant D3 [Homo
sapiens]
Length = 363
Score = 127 bits (319), Expect = 9e-28
Identities = 89/286 (31%), Positives = 143/286 (49%), Gaps = 31/286 (10%)
Query: 223 LNNMKFNPTNDCMVYSASSDGTISFTDLETGI-----SSSLMNLNPEGWQGPSTWKMLYG 277
+ +KFNP N Y++S +GT D + I SS +N+ W
Sbjct: 95 ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINI----------W--FCS 142
Query: 278 MDINSEKGLVLVADNFGFLHLVDMRSNNKTGNAILIHKKNTKVVGIHCNPIEPDILLTCG 337
+D+++ +V+ DN G + L++M + K + +HKK KV + NP L T
Sbjct: 143 LDVSASSRMVVTGDNVGNVILLNM--DGKELWNLRMHKK--KVTHVALNPCCDWFLATAS 198
Query: 338 NDHYARVWDIRRMETGSS-IYDLKHNRVVSSAYFSPVSGNKILTTSLDNRLRVWDSIFGK 396
D ++WD+R++ +S +Y L H V++A FSP G ++LTT + +RV+ + +
Sbjct: 199 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSA--SQ 255
Query: 397 MDSPSREIVHSHDFNRYLTPFKAEWDPKDPSESLAVVGRYISENYNGAA---LHPIDFID 453
D P I H H ++LTP KA W P+ +L VVGRY N+ L ID D
Sbjct: 256 WDCPLGLIPHPHRHFQHLTPIKAAWHPR---YNLIVVGRYPDPNFKSCTPYELRTIDVFD 312
Query: 454 VSTGKLVAEVMDPNITTISPVNKLHPNDDILASGSSSSLFIWKPKE 499
++GK++ ++ DP + IS +N+ +P D LAS + IW +E
Sbjct: 313 GNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQEE 358
>ref|XP_230512.2| PREDICTED: similar to hypothetical protein FLJ12973 [Rattus
norvegicus]
Length = 621
Score = 116 bits (291), Expect = 2e-24
Identities = 94/319 (29%), Positives = 149/319 (46%), Gaps = 29/319 (9%)
Query: 179 ITCLEFHPTK-NNIILSGDKKGQLGVWDFVRVHEKVVYGNI-HSCLLNNMKFNPTNDCMV 236
I+ + HP+ ++ +G K GQ+G+WD + E Y HS ++ + F+PTN +
Sbjct: 314 ISSVAIHPSGVRTLVAAGSKSGQVGLWDLTQQSEDGAYAFCPHSQPVSCLSFSPTNPAHL 373
Query: 237 YSASSDGTISFTDLETGISSSLMNLNPEGWQGPSTWKMLYGMDINSEKGLVLVADNFGFL 296
S S DGT+ D T + + + L D + +LV G L
Sbjct: 374 LSLSYDGTVRCGDFSTAVFEEVYR---------NERNSLSSFDFLDDASTLLVGHWSGHL 424
Query: 297 HLVDMRSNNKTGNAILIHKKNTKVVGIHCNPIEPDILLTCGNDHYARVWDIRRMETGSS- 355
LVD R+ T I+ K+ +H +P+ +T G V+D+R +++G S
Sbjct: 425 SLVDRRTPG-TSYEKFINSSLEKIRTVHVHPLSRQYFITAGLRD-VHVYDVRCLKSGKSQ 482
Query: 356 --IYDLKHNRVVSSAYFSPVSGNKILTTSLDNRLRVWDSIFGKMDSP-SREIVHSHDFNR 412
I +H++ ++SAYFSPV+GN+++TT D +LRV+DS P I H+ R
Sbjct: 483 PLISLTEHSKSIASAYFSPVTGNRVVTTCADCKLRVFDSSSLSSQFPLVSTIRHNTITGR 542
Query: 413 YLTPFKAEWDPKDPSESLAVVGRYISENYNGAALHPIDF-IDVSTGKLVAEVMDPNITTI 471
+LT F+A WDPK E V G+ HP + TGK V + ++
Sbjct: 543 WLTRFQAVWDPK--QEDCFTV---------GSMAHPRRVEVFHETGKNVHSFGGECLVSV 591
Query: 472 SPVNKLHPNDDILASGSSS 490
++ +HP ILA G+ S
Sbjct: 592 CSLSVMHPTRYILAGGNCS 610
>gb|AAH94676.1| 5830411K18Rik protein [Mus musculus] gi|63492305|ref|XP_357252.3|
PREDICTED: hypothetical protein LOC241627 [Mus musculus]
Length = 524
Score = 113 bits (283), Expect = 1e-23
Identities = 93/319 (29%), Positives = 156/319 (48%), Gaps = 29/319 (9%)
Query: 179 ITCLEFHPTK-NNIILSGDKKGQLGVWDFVRVHEKVVYG-NIHSCLLNNMKFNPTNDCMV 236
I+ + HP++ ++ +G K GQ+G+WD + E +Y HS ++ + F+PTN +
Sbjct: 217 ISSVALHPSEVRTLVAAGAKSGQIGLWDLTQQSEDAMYVFYAHSRYVSCLSFSPTNPAHL 276
Query: 237 YSASSDGTISFTDLETGISSSLMNLNPEGWQGPSTWKMLYGMDINSEKGLVLVADNFGFL 296
S S DGT+ D + + + EG PS++ L ++ +LV G L
Sbjct: 277 LSLSYDGTLRCGDFSSAVFEEVYR--NEG-NSPSSFDFL------NDSSSLLVGHWDGHL 327
Query: 297 HLVDMRSNNKTGNAILIHKKNTKVVGIHCNPIEPDILLTCGNDHYARVWDIRRMETGSS- 355
LVD R+ T + K+ +H +P+ +T G V+D R +++ S
Sbjct: 328 SLVDRRTPG-TSYEKFFNSSLEKIRTVHVHPLSRQYFVTAGLRD-VHVYDARFLKSRGSQ 385
Query: 356 --IYDLKHNRVVSSAYFSPVSGNKILTTSLDNRLRVWDSIFGKMDSPSREIV-HSHDFNR 412
I +H++ ++SAYFSPV+GN+++TT D +LRV+DS P + H+ R
Sbjct: 386 PLISLTEHSKSIASAYFSPVTGNRVVTTCADCKLRVFDSSSISSQLPLLSTIRHNTVTGR 445
Query: 413 YLTPFKAEWDPKDPSESLAVVGRYISENYNGAALHPIDF-IDVSTGKLVAEVMDPNITTI 471
+LT F+A WDPK E +V G+ HP + +GK V + + ++
Sbjct: 446 WLTRFQAVWDPK--QEDCFIV---------GSMDHPRRVEVFHESGKNVHSLWGECLVSV 494
Query: 472 SPVNKLHPNDDILASGSSS 490
++ +HP ILA G+SS
Sbjct: 495 CSLSAVHPTRYILAGGNSS 513
>ref|XP_597573.1| PREDICTED: similar to DNA damage binding protein 2 (Damage-specific
DNA binding protein 2) (DDB p48 subunit) (DDBb)
(UV-damaged DNA-binding protein 2) (UV-DDB 2), partial
[Bos taurus]
Length = 226
Score = 107 bits (268), Expect = 8e-22
Identities = 70/213 (32%), Positives = 115/213 (53%), Gaps = 14/213 (6%)
Query: 278 MDINSEKGLVLVADNFGFLHLVDMRSNNKTGNAILIHKKNTKVVGIHCNPIEPDILLTCG 337
+D++ + +V+ DN G + L++M + +HKK KV + NP +L T
Sbjct: 6 LDVSVKSRVVVTGDNVGHVILLNMDGRELWN--LRMHKK--KVTHVALNPCCDWLLATAS 61
Query: 338 NDHYARVWDIRRMETGSS-IYDLKHNRVVSSAYFSPVSGNKILTTSLDNRLRVWDSIFGK 396
D ++WD+R++ SS ++ L H V++A+FSP G ++LTT + +RV+ + +
Sbjct: 62 VDQTVKIWDLRQVRGKSSFLHSLPHRHPVNAAHFSP-DGAQLLTTDQKSEIRVYSAC--Q 118
Query: 397 MDSPSREIVHSHDFNRYLTPFKAEWDPKDPSESLAVVGRYISENYNGAALH---PIDFID 453
D P I H H ++LTP KA W P+ +L VVGRY N+ + H ID D
Sbjct: 119 WDCPPSLIPHPHRHFQHLTPIKASWHPR---YNLIVVGRYPDPNFKSCSPHELRTIDVFD 175
Query: 454 VSTGKLVAEVMDPNITTISPVNKLHPNDDILAS 486
S+GK++ ++ DP + I +N+ +P D LAS
Sbjct: 176 GSSGKIMYQLYDPESSGIMSLNEFNPMGDTLAS 208
>ref|XP_544653.1| PREDICTED: similar to hypothetical protein FLJ12973 [Canis
familiaris]
Length = 635
Score = 105 bits (262), Expect = 4e-21
Identities = 90/316 (28%), Positives = 144/316 (45%), Gaps = 32/316 (10%)
Query: 185 HPTK-NNIILSGDKKGQLGVWDFVRVHEK--VVYGNIHSCLLNNMKFNPTNDCMVYSASS 241
HP++ ++ +G K GQ+G+WD ++ V HS ++ + F+P N + S S
Sbjct: 330 HPSEIRTLVAAGAKSGQVGLWDLTHQSKEDGVYVFQPHSQPVSCLYFSPANPAHILSLSY 389
Query: 242 DGTISFTDLETGISSSLMNLNPEGWQGPSTWKMLYGMDINSEKGLVLVADNF-GFLHLVD 300
DGT+ D I + + D E L+ ++ G + LVD
Sbjct: 390 DGTLRCGDFSRAIFEEVYRDERSSFSS---------FDFLGEDASTLIVGHWNGNISLVD 440
Query: 301 MRSNNKTGNAILIHKKNTKVVGIHCNPIEPDILLTCGNDHYARVWDIRRMETGSS---IY 357
R+ T LI+ K+ +H +P+ +T G ++D R + S I
Sbjct: 441 RRTPG-TSYEKLINSSLRKIRTVHVHPVHRQYFITAGLRD-THIYDTRHLNPRGSQPLIS 498
Query: 358 DLKHNRVVSSAYFSPVSGNKILTTSLDNRLRVWDSIFGKMDSP-SREIVHSHDFNRYLTP 416
+H + ++SAYFSP++GNK++TT D +LR++DS + P I H+ R+LT
Sbjct: 499 LTEHTKSIASAYFSPLTGNKVVTTCADCKLRIFDSSCISSEIPLLTTIRHNTITGRWLTR 558
Query: 417 FKAEWDPKDPSESLAVVGRYISENYNGAALHPIDF-IDVSTGKLVAEVMDPN-ITTISPV 474
F+A WDPK E +V G+ HP I TGK V + ++ +
Sbjct: 559 FQAVWDPK--QEDCIIV---------GSMAHPRRVEIFHETGKQVHSFFGGECLVSVCSI 607
Query: 475 NKLHPNDDILASGSSS 490
N +HP ILA G+SS
Sbjct: 608 NAMHPTRYILAGGNSS 623
>dbj|BAB14369.1| unnamed protein product [Homo sapiens] gi|13376367|ref|NP_079184.1|
WD repeat domain 76 [Homo sapiens]
gi|30704556|gb|AAH51855.1| Hypothetical protein FLJ12973
[Homo sapiens]
Length = 626
Score = 102 bits (253), Expect = 4e-20
Identities = 91/332 (27%), Positives = 149/332 (44%), Gaps = 31/332 (9%)
Query: 179 ITCLEFHPTKNNIILS-GDKKGQLGVWDFVRVHEK--VVYGNIHSCLLNNMKFNPTNDCM 235
I + HP++ +++ G K GQ+G+ D + ++ V + HS ++ + F+P N
Sbjct: 316 IFSMALHPSETRTLVAVGAKFGQVGLCDLTQQPKEDGVYVFHPHSQPVSCLYFSPANPAH 375
Query: 236 VYSASSDGTISFTDLETGISSSLMNLNPEGWQGPSTWKMLYGMDINSEKGLVLVADNF-G 294
+ S S DGT+ D I + + D +E L+ ++ G
Sbjct: 376 ILSLSYDGTLRCGDFSRAIFEEVYRNERSSFSS---------FDFLAEDASTLIVGHWDG 426
Query: 295 FLHLVDMRSNNKTGNAILIHKKNTKVVGIHCNPIEPDILLTCGNDHYARVWDIRRMETGS 354
+ LVD R+ T L K+ +H +P+ +T G ++D RR+ +
Sbjct: 427 NMSLVDRRTPG-TSYEKLTSSSMGKIRTVHVHPVHRQYFITAGLRD-THIYDARRLNSRR 484
Query: 355 S---IYDLKHNRVVSSAYFSPVSGNKILTTSLDNRLRVWDSIFGKMDSPSREIVHSHDF- 410
S I +H + ++SAYFSP++GN+++TT D LR++DS P + + F
Sbjct: 485 SQPLISLTEHTKSIASAYFSPLTGNRVVTTCADCNLRIFDSSCISSKIPLLTTIRHNTFT 544
Query: 411 NRYLTPFKAEWDPKDPSESLAVVGRYISENYNGAALHPIDF-IDVSTGKLVAEVMDPNIT 469
R+LT F+A WDPK E +V G+ HP I TGK V +
Sbjct: 545 GRWLTRFQAMWDPK--QEDCVIV---------GSMAHPRRVEIFHETGKRVHSFGGEYLV 593
Query: 470 TISPVNKLHPNDDILASGSSSSLFIWKPKEKS 501
++ +N +HP ILA G+SS EKS
Sbjct: 594 SVCSINAMHPTRYILAGGNSSGKIHVFMNEKS 625
>ref|XP_523063.1| PREDICTED: hypothetical protein XP_523063 [Pan troglodytes]
Length = 625
Score = 100 bits (248), Expect = 2e-19
Identities = 89/329 (27%), Positives = 148/329 (44%), Gaps = 31/329 (9%)
Query: 182 LEFHPTKNNIILS-GDKKGQLGVWDFVRVHEK--VVYGNIHSCLLNNMKFNPTNDCMVYS 238
+ HP++ +++ G K GQ+G+ D + ++ V + HS ++ + F+P N + S
Sbjct: 318 MALHPSETRTLVAVGAKFGQVGLCDLTQQPKEDGVYVFHPHSQPVSCLYFSPANPAHILS 377
Query: 239 ASSDGTISFTDLETGISSSLMNLNPEGWQGPSTWKMLYGMDINSEKGLVLVADNF-GFLH 297
S DGT+ D I + + D +E L+ ++ G +
Sbjct: 378 LSYDGTLRCGDFSRAIFEEVYRNERSSFSS---------FDFLAEDASTLIVGHWDGNMS 428
Query: 298 LVDMRSNNKTGNAILIHKKNTKVVGIHCNPIEPDILLTCGNDHYARVWDIRRMETGSS-- 355
LVD R+ T L K+ +H +P+ +T G ++D R++ + S
Sbjct: 429 LVDRRTPG-TSYEKLTSSSMGKIRTVHVHPVHRQYFITAGLRD-THIYDARQLNSRRSQP 486
Query: 356 -IYDLKHNRVVSSAYFSPVSGNKILTTSLDNRLRVWDSIFGKMDSPSREIVHSHDF-NRY 413
I +H + ++SAYFSP++GN+++TT D LR++DS P + + F R+
Sbjct: 487 LISLTEHTKSIASAYFSPLTGNRVVTTCADCNLRIFDSSCISSKIPLLTTIRHNTFTGRW 546
Query: 414 LTPFKAEWDPKDPSESLAVVGRYISENYNGAALHPIDF-IDVSTGKLVAEVMDPNITTIS 472
LT F+A WDPK E +V G+ HP I TGK V + ++
Sbjct: 547 LTRFQAMWDPK--QEDCVIV---------GSMAHPRRVEIFHETGKRVHSFGGEYLVSVC 595
Query: 473 PVNKLHPNDDILASGSSSSLFIWKPKEKS 501
+N +HP ILA G+SS EKS
Sbjct: 596 SINAMHPTRYILAGGNSSGKIHVFMNEKS 624
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.315 0.134 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,059,310,742
Number of Sequences: 2540612
Number of extensions: 49843865
Number of successful extensions: 345778
Number of sequences better than 10.0: 3213
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 2222
Number of HSP's that attempted gapping in prelim test: 298073
Number of HSP's gapped (non-prelim): 21818
length of query: 564
length of database: 863,360,394
effective HSP length: 133
effective length of query: 431
effective length of database: 525,458,998
effective search space: 226472828138
effective search space used: 226472828138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 78 (34.7 bits)
Lotus: description of TM0346.11