BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0336.1
(1182 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF99727.1| F17L21.7 [Arabidopsis thaliana] 656 0.0
dbj|BAB10876.1| polyprotein [Arabidopsis thaliana] 637 0.0
gb|AAF02855.1| Similar to retrotransposon proteins [Arabidopsis ... 560 e-157
gb|AAD14478.1| Strong similarity to gb|AF039376 Evelknievel retr... 547 e-154
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana] 540 e-151
gb|AAK51235.1| polyprotein [Arabidopsis thaliana] 539 e-151
gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 proteas... 538 e-151
gb|AAP54850.1| putative gag-pol polyprotein [Oryza sativa (japon... 521 e-146
gb|AAP51971.1| putative copia-type polyprotein [Oryza sativa (ja... 521 e-146
emb|CAB81478.1| putative protein [Arabidopsis thaliana] gi|49720... 520 e-145
emb|CAB81170.1| retrotransposon like protein [Arabidopsis thalia... 508 e-142
emb|CAB79576.1| putative protein [Arabidopsis thaliana] gi|32692... 504 e-141
gb|AAP53905.1| putative pol polyprotein [Oryza sativa (japonica ... 477 e-132
gb|AAT39281.1| putative late blight resistance protein [Solanum ... 466 e-129
gb|AAU89779.1| gag-pol polyprotein-like [Solanum tuberosum] 459 e-127
gb|AAG51258.1| Ty1/copia-element polyprotein [Arabidopsis thalia... 445 e-123
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi... 442 e-122
gb|AAT38747.1| putative polyprotein [Solanum demissum] 436 e-120
ref|NP_916434.1| putative gag/pol polyprotein [Oryza sativa (jap... 430 e-118
gb|AAU89728.1| putative retroelement pol polyprotein-like [Solan... 427 e-117
>gb|AAF99727.1| F17L21.7 [Arabidopsis thaliana]
Length = 1534
Score = 656 bits (1693), Expect = 0.0
Identities = 434/1215 (35%), Positives = 615/1215 (49%), Gaps = 190/1215 (15%)
Query: 34 KLSDRNFLLWKQQVEPIIKAHNLHVLVQDP-EIPPRFVTERDRVAGTLNPAYSVWESKDQ 92
KL+ NFL+W++QV+ ++ ++L + +PP +T V T+NPA+ W+ +DQ
Sbjct: 126 KLTSSNFLMWRRQVQALLNGYDLTGYIDGSIVVPPATITANGAV--TVNPAFKHWQRQDQ 183
Query: 93 YLLSWLQSSLSTPVLSRMIGCAHSFQLWEKIHSFFHNQTRAKSTQLRTELRSETLGNRTI 152
+ S L ++S V + S ++W K+ + + + QLR +++ ++I
Sbjct: 184 LIYSALLGAISISVQPILSRTTTSAEIWTKLMDTYAKPSWSHIQQLRQQIKQWKKDTKSI 243
Query: 153 SEFLLQIKSIIDSLFAIGDPISPREHLDVILQGLPSDYEDLITLISTRFEEHSIDELEAL 212
EF + D L +G P+ E ++VI++GL DY+ +I I R S+ E+
Sbjct: 244 DEFFQGLVMRFDQLALLGKPMESEEQMEVIVEGLSDDYKQVIDQIQGREVPPSLTEIHEK 303
Query: 213 LLAKEARLGKYRTPSATGEISVNVALSNPQTPSSSAVSTQSASHTTSQGESQDSDPMDSY 272
LL E +L + +++ IS N A P P+++ ++++ Q + ++ +SY
Sbjct: 304 LLNHEVKL---QAAASSLPISANAASYRP--PANN--KHNNSNNYRGQNRNNNNRGANSY 356
Query: 273 DSSGHGRGSSRGRGARGRGRGRSSIQCQLCYKFGHDVWQCYHRFNPNFVPQKPPQNSPQN 332
+ + SSRG + CQ+C FGH +C
Sbjct: 357 QQPRNDQPSSRGYQGK----------CQICGVFGHSARRC-------------------- 386
Query: 333 SQWNSSPQWHSNSQWSSTPQWNSQWSAPVSSPWQHSSSQWPPRYPPAPSGYAPMASSPGV 392
S Q + +S P S + +++ W PR A Y P
Sbjct: 387 ----------------SQLQMSGAYSTPSPSQYPNATVPWQPRANMAAMSYNP------- 423
Query: 393 PYRGPAPSPMGYAQAHVAFQTSTSTPQATSPAQSWYPDSGASHHVTSESQNVHQFTPFAG 452
W DSGA+HH+T++ N+ P+ G
Sbjct: 424 ----------------------------------WLLDSGATHHLTTDLNNLALHQPYNG 449
Query: 453 QDQLFVGNGQGLPISGIGSSTLSS---GLVLNNLLHVPSITKNLVSVSKFARDNGVFFEF 509
+++ + +G LPI+ GSSTLS+ L LNN+L+VP++ KNL+SV K N V EF
Sbjct: 450 GEEVTIADGSTLPITHTGSSTLSTQSRSLALNNILYVPNLHKNLISVYKLCNANKVSVEF 509
Query: 510 HPYYCCVKSQASSKVLLQGSVGADGLYKFHEFKLSHLPVSLSAPVQHPVSVHTSVSSSGH 569
P + VK ++ LLQG D LY++ PV P P+S+ S
Sbjct: 510 FPAHFQVKDLSTGARLLQGRT-KDELYEW--------PV----PSNTPISLFAS------ 550
Query: 570 APVEQPSVVSSVCTANLWHFRLGHPSLNVLRKALQFCKIPVSNKMDVDF-CKACVMGKSH 628
P + ++ S WH RLGHPS VL+ + +PVSN F C C++ KSH
Sbjct: 551 -PTPKTTLPS-------WHSRLGHPSPPVLKSLVSQFSLPVSNSSQKHFPCSHCLINKSH 602
Query: 629 RLPSSLSTTEYTSPLELVYSDLWGPSPSPSSSGYLYYITFIDAYSRYTWIYLLKAKSEAI 688
+LP +T +PLE VYSD+W SP S + YY+ +D Y+RYTW+Y LK KS+
Sbjct: 603 KLPFYSNTIISYTPLEYVYSDVW-TSPVTSVDNFKYYLILVDHYTRYTWLYPLKQKSQVR 661
Query: 689 SAFHQFKASSELQLNAKIKALQTDWGGEFRVFPNFLKDFGIHHRLICPHTHHQNGVVERK 748
F FKA E + KI+ L +D GGEF FL GI H PHT NG+ ERK
Sbjct: 662 ETFVAFKALVENRFQTKIRTLYSDNGGEFIALRQFLLTHGISHLTSLPHTPEHNGIAERK 721
Query: 749 HRHIVDLGLSLLAHASIPLTYWDFAFSTAVYLINRLPTSSLQFDIPLYKLFKQIPDYTFL 808
HRHI++ GL+LL ASIP +YW +AF TAVYLINRLP+S L + P KLFK P+Y L
Sbjct: 722 HRHILETGLTLLTQASIPTSYWTYAFGTAVYLINRLPSSVLNNESPYSKLFKTSPNYLKL 781
Query: 809 KVFGCTCFPLMRPYNSHKLDFRSQECVFLGYSPSHRGYKCL-ASSGRIYISKDVIFDEHT 867
+VFGC+CFP +RPY +HKL+ RSQ CVFLGYS + Y CL SSGR+Y S+ V F E
Sbjct: 782 RVFGCSCFPWLRPYTNHKLERRSQPCVFLGYSLTQSAYLCLDRSSGRVYTSRHVQFVEDQ 841
Query: 868 FPY---PKLFAQNSNSPSLSPAVVLPSLPSVEHFSQPAIAQPSSSLP--------SPFLP 916
FP+ NS+ SP+ P S P + Q SSLP P
Sbjct: 842 FPFSISDTHSVSNSSPEEASPSCHQPPSRIPIQSSSPPLVQAPSSLPPLSSDSHRRPNAE 901
Query: 917 SPIASSDQN--------------------PSSTSPASAPATSEASAEI-------PSQVT 949
+ +SS N P+S+S A + S S+ I PS
Sbjct: 902 TSSSSSSTNNDVVVSKDNTQVDNRNNFIGPTSSSSAQSQNNSNPSSSIQTQNEPNPSPSP 961
Query: 950 IPTSSGQVSAPSSS---------------GNVHPMITRSKNGIVQPRVQPTLL--TVQLE 992
P +S S+PSSS N HPM TR+KN I +P+ + +LL TVQ
Sbjct: 962 TPQNSSPESSPSSSTSATSTVPNPPPPPPTNNHPMRTRAKNHITKPKTKLSLLAKTVQTR 1021
Query: 993 ---PTTVKQALAHPQWLQAMQAEFDALQKNKTWSLVPLPPGREAIGCKWVFRVKHNPDGT 1049
P TV QAL +W AM E +A +N T+ LVP P + I KW+F +K+ P+GT
Sbjct: 1022 PQIPNTVNQALRDEKWRNAMGEEINAQIRNNTFELVPPKPNQNVISTKWIFTLKYLPNGT 1081
Query: 1050 LNKYKARLVAKGFHQQPGFDYTETFSPVIKPVTIRVILTLALTNHWTIQQLDVNNAFLNG 1109
L++YKARLVA+GF QQ G Y+ETFSPV+K +TIR++L LA++ WTI+QLDVNNAFL G
Sbjct: 1082 LDRYKARLVARGFRQQYGLHYSETFSPVVKSLTIRLVLQLAVSRSWTIKQLDVNNAFLQG 1141
Query: 1110 DLAEEVYMQQPQGF-EHDK-KLVCRLHKALYGLKQAPRAWFEKLTSALVQFGFVASKCDP 1167
L +EVY+ QP GF + D+ VCRL KALYGLKQAPRAW+++L + + GF S D
Sbjct: 1142 TLTDEVYVTQPPGFIDPDRPHHVCRLKKALYGLKQAPRAWYQELRNFVCSLGFTNSLADT 1201
Query: 1168 SLFVLSKKPLVIYVL 1182
S+FV ++Y L
Sbjct: 1202 SVFVYINDIQIVYCL 1216
>dbj|BAB10876.1| polyprotein [Arabidopsis thaliana]
Length = 1429
Score = 637 bits (1642), Expect = 0.0
Identities = 421/1220 (34%), Positives = 596/1220 (48%), Gaps = 184/1220 (15%)
Query: 34 KLSDRNFLLWKQQVEPIIKAHNLHVLVQDPEIPPRFVTERDRVAGTLNPAYSVWESKDQY 93
KL+ NFL+W++QV ++ ++L V D I T + NP Y +W+ +D+
Sbjct: 6 KLTSTNFLMWRRQVHALLDGYDLAGYV-DGSIEEPHTTVTVHGVTSPNPEYKLWKRQDKL 64
Query: 94 LLSWLQSSLSTPVLSRMIGCAHSFQLWEKIHSFFHNQTRAKSTQLRTELRSETLGNRTIS 153
+ S L ++S V + S Q+W K+ + N +R Q+R +++ G+R+I
Sbjct: 65 IYSGLIGAISVAVQPLLSQATTSAQIWRKLVDTYANPSRGHKQQIREQIKQWKKGSRSID 124
Query: 154 EFLLQIKSIIDSLFAIGDPISPREHLDVILQGLPSDYEDLITLISTRFEEHSIDELEALL 213
+++L + + D L + + I + + IL GL DY +I I R SI EL L
Sbjct: 125 DYVLGLTTRFDQLALLEEAIPHEDQIAYILGGLSDDYRRVIDQIEGRDISPSITELHEKL 184
Query: 214 LAKEARLGKYRTPSATGEISVNVALSNPQTPSSSAVSTQSASHTTSQGESQDSDPMDSYD 273
+ E +L P SS T +A+ SY+
Sbjct: 185 INFELKL-------------------QAMVPDSSTPVTANAA---------------SYN 210
Query: 274 SSGHGRGSSRGRGARGRGRGRSSIQCQLCYKFGHDVWQCYHRFNPNFVPQKPPQNSPQNS 333
++ +GR + R RG QN+
Sbjct: 211 NNNNGRNN------RSSSRGN------------------------------------QNN 228
Query: 334 QWNSSPQWHSNSQWSSTPQWNSQWSAPVSSPWQHSSSQWPPRYPPAPSGYAPMASSPGVP 393
QW + S S + Q + HS+ + P SG + S G P
Sbjct: 229 QWQQNQTQQSRSNNRGSQGKGYQGRCQICGVHGHSARRCSQFQPYGGSGGSQSVPS-GYP 287
Query: 394 YRGPAPSPMGYAQAHVAFQTSTSTPQATSPAQSWYPDSGASHHVTSESQNVHQFTPFAGQ 453
G +PSPM Q T+ P W DSGA+HH+TS+ N+ P+ G
Sbjct: 288 TNGYSPSPMAPWQPRANIATAP-------PFNPWVLDSGATHHLTSDLANLSMHQPYTGG 340
Query: 454 DQLFVGNGQGLPISGIGSSTL---SSGLVLNNLLHVPSITKNLVSVSKFARDNGVFFEFH 510
+++ + +G GLPIS GS+ L S L L ++L+VP+++KNL+SV + N V EF
Sbjct: 341 EEVTIADGSGLPISHTGSALLPTPSRSLALKDILYVPNVSKNLISVYRLCNANQVSVEFF 400
Query: 511 PYYCCVKSQASSKVLLQGSVGADGLYKFHEFKLSHLPVSLSAPVQHPVSVHTSVSSSGHA 570
P + VK + LLQG + +E+ ++ +++ P T +SS
Sbjct: 401 PAHFQVKDLNTGARLLQGRTRNE----LYEWPVNQKSITILTASPSP---KTDLSS---- 449
Query: 571 PVEQPSVVSSVCTANLWHFRLGHPSLNVLRKALQFCKIPVSNKMDVDF-CKACVMGKSHR 629
WH RLGHP+L +L+ + +P+SN + C C + KSH+
Sbjct: 450 ----------------WHQRLGHPALPILKDVVSHFHLPLSNTIPKQLPCSDCSINKSHK 493
Query: 630 LPSSLSTTEYTSPLELVYSDLWGPSPSPSSSGYLYYITFIDAYSRYTWIYLLKAKSEAIS 689
LP +T + PLE +Y+D+W SP S Y YY+ +D ++RYTW+Y LK KS+
Sbjct: 494 LPFFTNTIVSSQPLEYLYTDVW-TSPCISVDNYKYYLVIVDHFTRYTWMYPLKQKSQVKD 552
Query: 690 AFHQFKASSELQLNAKIKALQTDWGGEFRVFPNFLKDFGIHHRLICPHTHHQNGVVERKH 749
F FKA E + ++I+ L +D GGEF FL GI H PHT NG+ ERKH
Sbjct: 553 VFVAFKALVENRFQSRIRTLYSDNGGEFIGLRPFLAAHGISHLTSPPHTPEHNGLAERKH 612
Query: 750 RHIVDLGLSLLAHASIPLTYWDFAFSTAVYLINRLPTSSLQFDIPLYKLFKQIPDYTFLK 809
RHIV+ GL+LL HAS+P T+W +AF+TAVYLINR+PT LQ P KLF+ P+Y L+
Sbjct: 613 RHIVETGLALLTHASLPKTFWTYAFATAVYLINRMPTEVLQGTSPYVKLFQMSPNYLKLR 672
Query: 810 VFGCTCFPLMRPYNSHKLDFRSQECVFLGYSPSHRGYKCL-ASSGRIYISKDVIFDEHTF 868
VFGC C+P +RPYN++KL+ RS CVFLGYS + Y CL ++ RIY S+ V F E +F
Sbjct: 673 VFGCLCYPWLRPYNTNKLEARSTMCVFLGYSLTQSAYLCLDIATNRIYTSRHVQFVESSF 732
Query: 869 PY--PKLFAQNSNSPSLSPAV--VLPSLPSVEHFSQPAIA-----------QPSS--SLP 911
P+ P+ +S P V+P L H + P PSS S P
Sbjct: 733 PFASPRTSETDSTQTMSQPTTTNVIPLLQRPPHIAPPTALPLCPIFHSPPHSPSSPASPP 792
Query: 912 SPFLPSPIASSDQN-----------------PSSTSPASAPATSEASAEIPSQVTIPTSS 954
S +P ASS N P+S SP + P S S T+
Sbjct: 793 SEHVPLTAASSSSNAINDDNISSTGQVSVSGPTSQSPHTTPTNQNTSPLSKSPNPTNTNQ 852
Query: 955 GQVSAPSSS-------------------------GNVHPMITRSKNGIVQPRVQPTLLTV 989
Q S P +S N HPM TR+KN I +P+ + L T
Sbjct: 853 SQNSTPPTSPTTSVHQHSPTPSPLPQNPPLPPPPQNDHPMRTRAKNQITKPKTKFNLTTS 912
Query: 990 QLE-----PTTVKQALAHPQWLQAMQAEFDALQKNKTWSLVPLPPGREAIGCKWVFRVKH 1044
PTTV QAL P W AM E +A KN TW LV + I CKW+F +K+
Sbjct: 913 LTSSKPTIPTTVAQALKDPNWRNAMSEEINAQMKNHTWDLVSPEEAKHVISCKWIFTLKY 972
Query: 1045 NPDGTLNKYKARLVAKGFHQQPGFDYTETFSPVIKPVTIRVILTLALTNHWTIQQLDVNN 1104
N DG++ +YKARLVA+GF+QQ G DY+ETFSPVIK TIR +L +A+ +W+I Q+D+NN
Sbjct: 973 NVDGSIARYKARLVARGFNQQYGIDYSETFSPVIKSTTIRTVLEVAVKRNWSIHQVDINN 1032
Query: 1105 AFLNGDLAEEVYMQQPQGF-EHDK-KLVCRLHKALYGLKQAPRAWFEKLTSALVQFGFVA 1162
AFL G L EEVY+ QP GF + D+ VCRL+KALYGLKQAPRAW+++L L+Q GFV
Sbjct: 1033 AFLQGTLNEEVYVSQPPGFIDRDRPSHVCRLNKALYGLKQAPRAWYQELRRFLLQAGFVN 1092
Query: 1163 SKCDPSLFVLSKKPLVIYVL 1182
S D SLF+ ++ +YVL
Sbjct: 1093 SLADASLFIYNRHNTFMYVL 1112
>gb|AAF02855.1| Similar to retrotransposon proteins [Arabidopsis thaliana]
gi|25301689|pir||C96578 hypothetical protein T18A20.5
[imported] - Arabidopsis thaliana
Length = 1522
Score = 560 bits (1442), Expect = e-157
Identities = 331/830 (39%), Positives = 453/830 (53%), Gaps = 86/830 (10%)
Query: 409 VAFQTSTSTPQATSPAQSWYPDSGASHHVTSESQNVHQFTPFAGQDQLFVGNGQGLPISG 468
+A T T W PDS AS HVT+ + Q P+ G D + V +G LPI+
Sbjct: 308 MALATMRITDVTDHHGHEWIPDSAASAHVTNNRHVLQQSQPYHGSDSIMVADGNFLPITH 367
Query: 469 IGSSTLSSG---LVLNNLLHVPSITKNLVSVSKFARDNGVFFEFHPYYCCVKSQASSKVL 525
GS +++S + L +L P I K+L+SVSK D EF + +A+ K+L
Sbjct: 368 TGSGSIASSSGKIPLKEVLVCPDIVKSLLSVSKLTSDYPCSVEFDADSVRINDKATKKLL 427
Query: 526 LQGSVGADGLYKFHEFKLSHLPVSLSAPVQHPVSVHTSVSSSGHAPVEQPSVVSSVCTAN 585
+ G DGLY E KL L S + ++
Sbjct: 428 VMGR-NRDGLYSLEEPKLQVL----------------------------YSTRQNSASSE 458
Query: 586 LWHFRLGHPSLNVLRKALQFCKIPVSNKMDVDFCKACVMGKSHRLPSSLSTTEYTSPLEL 645
+WH RLGH + VL + I + NK+ C+AC +GKS RLP LST + PLE
Sbjct: 459 VWHRRLGHANAEVLHQLASSKSIIIINKVVKTVCEACHLGKSTRLPFMLSTFNASRPLER 518
Query: 646 VYSDLWGPSPSPSSSGYLYYITFIDAYSRYTWIYLLKAKSEAISAFHQFKASSELQLNAK 705
++ DLWGPSP+ S G+ YY+ FID YSR+TW Y LK KS+ S F F+ E QL K
Sbjct: 519 IHCDLWGPSPTSSVQGFRYYVVFIDHYSRFTWFYPLKLKSDFFSTFVMFQKLVENQLGHK 578
Query: 706 IKALQTDWGGEF--RVFPNFLKDFGIHHRLICPHTHHQNGVVERKHRHIVDLGLSLLAHA 763
IK Q D GGEF F L+D GI + CP+T QNG+ ERKHRHIV+LGLS++ +
Sbjct: 579 IKIFQCDGGGEFISSQFLKHLQDHGIQQNMSCPYTPQQNGMAERKHRHIVELGLSMIFQS 638
Query: 764 SIPLTYWDFAFSTAVYLINRLPTSSL-QFDIPLYKLFKQIPDYTFLKVFGCTCFPLMRPY 822
+PL YW +F TA ++IN LPTSSL + P KL+ + P+Y+ L+VFGC C+P +R Y
Sbjct: 639 KLPLKYWLESFFTANFVINLLPTSSLDNNESPYQKLYGKAPEYSALRVFGCACYPTLRDY 698
Query: 823 NSHKLDFRSQECVFLGYSPSHRGYKCL-ASSGRIYISKDVIFDEHTFPYPKLFAQ---NS 878
S K D RS +CVFLGY+ ++GY+CL +GRIYIS+ V+FDE+T P+ +++
Sbjct: 699 ASTKFDPRSLKCVFLGYNEKYKGYRCLYPPTGRIYISRHVVFDENTHPFESIYSHLHPQD 758
Query: 879 NSPSL-----SPAVVLPSLPSVEHFSQPAIAQPSSSLPSPFLPSPIASSDQNPSSTSPAS 933
+P L S V P+ P + +I QP ++ S P+ +A+ P+++ S
Sbjct: 759 KTPLLEAWFKSFHHVTPTQPDQSRYPVSSIPQPETTDLSA-APASVAAETAGPNASDDTS 817
Query: 934 AP-------------ATSEASAEIPSQVTIPTSSGQVSAPSSSG---------------- 964
T SA I PT+ +P+ S
Sbjct: 818 QDNETISVVSGSPERTTGLDSASIGDSYHSPTADSSHPSPARSSPASSPQGSPIQMAPAQ 877
Query: 965 -------NVHPMITRSKNGIVQPRVQPTLLTVQL---EPTTVKQALAHPQWLQAMQAEFD 1014
N H M+TR K GI +P + LLT ++ EP TV +AL HP W AMQ E
Sbjct: 878 QVQAPVTNEHAMVTRGKEGISKPNKRYVLLTHKVSIPEPKTVTEALKHPGWNNAMQEEMG 937
Query: 1015 ALQKNKTWSLVPLPPGREAIGCKWVFRVKHNPDGTLNKYKARLVAKGFHQQPGFDYTETF 1074
++ +TW+LVP P +G WVFR K + DG+L+K KARLVAKGF Q+ G DY ET+
Sbjct: 938 NCKETETWTLVPYSPNMNVLGSMWVFRTKLHADGSLDKLKARLVAKGFKQEEGIDYLETY 997
Query: 1075 SPVIKPVTIRVILTLALTNHWTIQQLDVNNAFLNGDLAEEVYMQQPQGFEHDKK--LVCR 1132
SPV++ T+R+IL +A W ++Q+DV NAFL+GDL E VYM+QP GF K VC
Sbjct: 998 SPVVRTPTVRLILHVATVLKWELKQMDVKNAFLHGDLTETVYMRQPAGFVDKSKPDHVCL 1057
Query: 1133 LHKALYGLKQAPRAWFEKLTSALVQFGFVASKCDPSLFVLSKKPLVIYVL 1182
LHK+LYGLKQ+PRAWF++ ++ L++FGF+ S DPSLFV S VI +L
Sbjct: 1058 LHKSLYGLKQSPRAWFDRFSNFLLEFGFICSLFDPSLFVYSSNNDVILLL 1107
Score = 122 bits (307), Expect = 5e-26
Identities = 83/310 (26%), Positives = 143/310 (45%), Gaps = 31/310 (10%)
Query: 31 ISEKLSDRNFLLWKQQVEPIIKAHNLHVLVQDPEIPP---RFVTERDRVAGTLNPAYSVW 87
++ L+ +N++LWK Q E + L V P R VT + + NP + W
Sbjct: 15 VTVTLNQQNYILWKSQFESFLSGQGLLGFVTGSISAPAQTRSVTHNNVTSEEPNPEFYTW 74
Query: 88 ESKDQYLLSWLQSSLSTPVLSRMIGCAHSFQLWEKIHSFFHNQTRAKSTQLRTELRSETL 147
DQ + SWL S + +LS ++ C S Q+W + + F+ + ++ +L+ L++
Sbjct: 75 HQTDQVVKSWLLGSFAEDILSVVVNCFTSHQVWLTLANHFNRVSSSRLFELQRRLQTLEK 134
Query: 148 GNRTISEFLLQIKSIIDSLFAIGDPISPREHLDVILQGLPSDYEDLITLISTRFEEH--- 204
+ T+ FL +K I D L ++G P+ + + L GL +YE + T I + +
Sbjct: 135 KDNTMEVFLKDLKHICDQLASVGSPVPEKMKIFSALNGLGREYEPIKTTIENSVDSNPSL 194
Query: 205 SIDELEALLLAKEARLGKYRT-PSATGEISVNVALSNPQTPSSSAVSTQSASHTTSQGES 263
S+DE+ + L + RL Y T P+ + ++ NV S+ H ++G+
Sbjct: 195 SLDEVASKLRGYDDRLQSYVTEPTISPHVAFNVTHSD-----------SGYYHNNNRGKG 243
Query: 264 QDSDPMDSYDSSGHGRGSSRGRG-------ARGRGRGRSSIQCQLCYKFGHDVWQCYHRF 316
+ S SG S+RGRG G G S + CQ+C K GH +C+HRF
Sbjct: 244 R------SNSGSGKSSFSTRGRGFHQQISPTSGSQAGNSGLVCQICGKAGHHALKCWHRF 297
Query: 317 NPNFVPQKPP 326
+ ++ + P
Sbjct: 298 DNSYQHEDLP 307
>gb|AAD14478.1| Strong similarity to gb|AF039376 Evelknievel retrotransposon
polyprotein from Arabidopsis arenosa. [Arabidopsis
thaliana] gi|25301711|pir||E96624 hypothetical protein
T2K10.7 [imported] - Arabidopsis thaliana
Length = 1194
Score = 547 bits (1409), Expect = e-154
Identities = 326/835 (39%), Positives = 444/835 (53%), Gaps = 105/835 (12%)
Query: 424 AQSWYPDSGASHHVTSESQNVHQFTPFAGQDQLFVGNGQGLPISGIGS---STLSSGLVL 480
A +W DSGA+HH+TS+ N+ P+ G + + + +G GL IS GS ST S L L
Sbjct: 285 ANNWLLDSGATHHITSDLNNLSLHQPYTGGEDVTIADGSGLSISHTGSALISTPSRSLAL 344
Query: 481 NNLLHVPSITKNLVSVSKFARDNGVFFEFHPYYCCVKSQASSKVLLQGSVGADGLYKFHE 540
++L+VP+I KNL+SV + N V EF P + VK + LLQG D LY++
Sbjct: 345 TDVLYVPNIHKNLISVYRMCNANKVSVEFFPAHFQVKDLKTGVQLLQGRT-KDELYEW-- 401
Query: 541 FKLSHLPVSLSAPVQHPVSVHTSVSSSGHAPVEQPSVVSSVCTANLWHFRLGHPSLNVLR 600
PV P S H P WH RLGHPSL+ L+
Sbjct: 402 ------------PVNPP-------KPSSHFTTTTPKT-----DLTSWHSRLGHPSLSTLK 437
Query: 601 KALQFCKIPVSNKMDVDF-CKACVMGKSHRLPSSLSTTEYTSPLELVYSDLWGPSPSPSS 659
+ +PVSN + F C C++ K+H+LP +T T PLE +Y DLW SP S
Sbjct: 438 VVVSQFSLPVSNSLQKQFNCSDCLLNKTHKLPFHTNTITSTQPLEYLYIDLW-TSPIVSI 496
Query: 660 SGYLYYITFIDAYSRYTWIYLLKAKSEAISAFHQFKASSELQLNAKIKALQTDWGGEFRV 719
+ YY+ +D Y+RY+W Y +K KS F FKA + KI L +D GGEF
Sbjct: 497 DNFKYYLVIVDHYTRYSWFYPIKQKSHVKDVFMTFKALVANKFQRKIIHLYSDNGGEFIA 556
Query: 720 FPNFLKDFGIHHRLICPHTHHQNGVVERKHRHIVDLGLSLLAHASIPLTYWDFAFSTAVY 779
+FL GI H PHT NG+ ERKHRHIV+ GL+LL AS+P +YW +AF+ A+Y
Sbjct: 557 LRSFLSSNGITHLTTPPHTPEHNGISERKHRHIVETGLTLLGQASMPKSYWSYAFTIAIY 616
Query: 780 LINRLPTSSLQFDIPLYKLFKQIPDYTFLKVFGCTCFPLMRPYNSHKLDFRSQECVFLGY 839
LINR+ + + P +LF Q P+Y L+VFGC CFP +RPY +HKLD R CVFLGY
Sbjct: 617 LINRMSSDVIGGISPYKRLFGQAPNYLKLRVFGCLCFPWLRPYTTHKLDDRPAPCVFLGY 676
Query: 840 SPSHRGYKCL-ASSGRIYISKDVIFDEHTFPYPK------LFAQNSNSPSLS------PA 886
S + Y CL ++GR+Y S+ V F E+T+P+ K + SN+ S++ P
Sbjct: 677 SQTQSAYLCLNRTTGRVYTSRHVQFVENTYPFTKPTLDPFTNLEESNNHSITTTVPSPPF 736
Query: 887 VVLPSLPS-VEHFSQPAIAQPSSSLPSPFLP----------------------------- 916
V LPS+P QP +QP+ S PSP P
Sbjct: 737 VQLPSVPPPTRDPHQPPPSQPAPS-PSPLSPPSMSSPVMTSSPQFSSNRDSTTLHGDYSH 795
Query: 917 ------------SPIASSDQNPSSTSPASAPATS-----------EASAEIPSQVTIPTS 953
PI S + S + P S+P+ S +S+ P+ + P+
Sbjct: 796 VDYGLSSPSNPPGPITSPTTSKSPSEPTSSPSHSNQPNKTPPNSPSSSSSSPTPIPSPSP 855
Query: 954 SGQVSAPSSSGNVHPMITRSKNGIVQPRVQPTLLTV----QLEPTTVKQALAHPQWLQAM 1009
S P N H M TR+KN I +P + TL PTTV +AL P W AM
Sbjct: 856 QSSNSPPPPPQNQHSMRTRAKNNITKPIKKLTLAATPKGKSKIPTTVAEALRDPNWRNAM 915
Query: 1010 QAEFDALQKNKTWSLVPLPPGREAIGCKWVFRVKHNPDGTLNKYKARLVAKGFHQQPGFD 1069
EF+A +N T+ LVP P + +G +W+F +K+NPDG++N+YKAR +AKGFHQQ G D
Sbjct: 916 SEEFNAGLRNSTYDLVPPKPHQNFVGTRWIFTIKYNPDGSINRYKARFLAKGFHQQHGLD 975
Query: 1070 YTETFSPVIKPVTIRVILTLALTNHWTIQQLDVNNAFLNGDLAEEVYMQQPQGFEHDKK- 1128
Y+ TFSPVIK T++ +L +A++ W I+QLD+NNAFL G L E+VY+ QP GF + +
Sbjct: 976 YSNTFSPVIKSTTVQTVLDIAVSRSWDIRQLDINNAFLQGRLTEDVYVAQPPGFINPDRP 1035
Query: 1129 -LVCRLHKALYGLKQAPRAWFEKLTSALVQFGFVASKCDPSLFVLSKKPLVIYVL 1182
VC L KAL+GLKQAPRAW+++L L+ GF S + SLF+ IY+L
Sbjct: 1036 NYVCHLKKALHGLKQAPRAWYQELRGFLLTCGFTNSVANTSLFIRQHNKDYIYIL 1090
Score = 85.5 bits (210), Expect = 1e-14
Identities = 61/244 (25%), Positives = 113/244 (46%), Gaps = 10/244 (4%)
Query: 34 KLSDRNFLLWKQQVEPIIKAHNLHVLVQDPEIPPRFVTERDRVAGTLNPAYSVWESKDQY 93
KL+ N+++W +QV ++ ++L + P + V+ NPAY W+ +D+
Sbjct: 30 KLTPTNYIMWNRQVHALLDGYDLAGYIDGSVTAPSEMITTAGVSAA-NPAYKFWKRQDKL 88
Query: 94 LLSWLQSSLST---PVLSRMIGCAHSFQLWEKIHSFFHNQTRAKSTQLRTELRSETLGNR 150
+ S + +++T P+LSR A ++WEK+ S + + Q+R ++ + G +
Sbjct: 89 IYSAILGTITTTIQPLLSRSNTAA---EIWEKLKSIYATPSWGHIQQMRQHIKQWSKGTK 145
Query: 151 TISEFLLQIKSIIDSLFAIGDPISPREHLDVILQGLPSDYEDLITLISTRFEEHSIDELE 210
TI+E+ + D L +G P+ E ++ +L GL DY+ ++ R + ++ EL
Sbjct: 146 TITEYFQGHTTRFDELALLGKPLEHAEQIEFLLGGLSEDYKSVVDQTEIRDKPPTLTELL 205
Query: 211 ALLLAKEARL--GKYRTPSATGEISVNVALSNPQTPSSSAVSTQSASHTTSQGESQDSDP 268
LL +EA+L TPS N + + + SH +S SQ S P
Sbjct: 206 EKLLNREAKLMCAAATTPSLPATAHAANYKGNSNNNQYNNNNRNNKSHGSSY-NSQQSIP 264
Query: 269 MDSY 272
+
Sbjct: 265 ASPF 268
>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1466
Score = 540 bits (1391), Expect = e-151
Identities = 320/794 (40%), Positives = 445/794 (55%), Gaps = 66/794 (8%)
Query: 406 QAHVAFQTSTSTPQATSPAQSWYPDSGASHHVTSESQNVHQFTPFAGQDQLFVGNGQGLP 465
Q+ V Q ++ + + WYPDS A+ H+T+ + + T + G D + VG+G LP
Sbjct: 303 QSEVPTQAFSALRVSDETGKEWYPDSAATAHITASTSGLQNATTYEGNDAVLVGDGTYLP 362
Query: 466 ISGIGSSTLSSG---LVLNNLLHVPSITKNLVSVSKFARDN--GVFFEFHPYYCCVKSQA 520
I+ +GS+T+SS + LN +L P+I K+L+SVSK D GV+F+ + C+
Sbjct: 363 ITHVGSTTISSSKGTIPLNEVLVCPAIQKSLLSVSKLCDDYPCGVYFDANK--VCIIDLT 420
Query: 521 SSKVLLQGSVGADGLYKFHEFKLSHLPVSLSAPVQHPVSVHTSVSSSGHAPVEQPSVVSS 580
+ KV+ +G +GLY + V+L + Q S+ T
Sbjct: 421 TQKVVSKGPRN-NGLYMLENSEF----VALYSNRQCAASMET------------------ 457
Query: 581 VCTANLWHFRLGHPSLNVLRKALQFCKIPVSNKMDVDFCKACVMGKSHRLPSSLSTTEYT 640
WH RLGH + +L++ L +I V+ C+ C MGKS RL S
Sbjct: 458 ------WHHRLGHSNSKILQQLLTRKEIQVNKSRTSPVCEPCQMGKSTRLQFFSSDFRAL 511
Query: 641 SPLELVYSDLWGPSPSPSSSGYLYYITFIDAYSRYTWIYLLKAKSEAISAFHQFKASSEL 700
PL+ V+ DLWGPSP S+ G+ YY F+D +SR++W + L+ KS+ IS F ++ E
Sbjct: 512 KPLDRVHCDLWGPSPVVSNQGFKYYAVFVDDFSRFSWFFPLRMKSKFISVFIAYQKLVEN 571
Query: 701 QLNAKIKALQTDWGGEF--RVFPNFLKDFGIHHRLICPHTHHQNGVVERKHRHIVDLGLS 758
QL KIK Q+D GGEF ++ GIHHR+ CP+T QNGV ERKHRH+V+LGLS
Sbjct: 572 QLGTKIKEFQSDGGGEFTSNKLKEHFREHGIHHRISCPYTPQQNGVAERKHRHLVELGLS 631
Query: 759 LLAHASIPLTYWDFAFSTAVYLINRLPTSSLQFDIPLYKLFKQIPDYTFLKVFGCTCFPL 818
+L H+ PL +W AF TA YL N LP+S L+ P LF+Q DYT L+VFG C+P
Sbjct: 632 MLYHSHTPLKFWVEAFFTANYLSNLLPSSVLKEISPYETLFQQKVDYTPLRVFGTACYPC 691
Query: 819 MRPYNSHKLDFRSQECVFLGYSPSHRGYKCL-ASSGRIYISKDVIFDEHTFPYPKLFAQN 877
+RP +K D RS +CVFLGY ++GY+CL +G++YIS+ VIFDE FP+ + +
Sbjct: 692 LRPLAKNKFDPRSLQCVFLGYHNQYKGYRCLYPPTGKVYISRHVIFDEAQFPFKEKY--- 748
Query: 878 SNSPSLSPAVVLPSLPSVEHFSQPAIAQPSSSL-PSPFLPSPIASSDQNP---------- 926
SL P L + +H + PSS L P +P+A+S+ P
Sbjct: 749 ---HSLVPKYQTTLLQAWQHTDLTPPSVPSSQLQPLARQMTPMATSENQPMMNYETEEAV 805
Query: 927 SSTSPASAPATSEASAEIPSQVTIPTSSGQ----VSAPSSSGNVHPMITRSKNGIVQPRV 982
+ S+ +E++ E +V P + Q S N+HPMITRSK+GI +P
Sbjct: 806 NVNMETSSDEETESNDEFDHEVA-PVLNDQNEDNALGQGSLENLHPMITRSKDGIQKPNP 864
Query: 983 QPTLLTVQL---EPTTVKQALAHPQWLQAMQAEFDALQKNKTWSLVPLPPGREAIGCKWV 1039
+ L+ + EP T+ A+ HP W A+ E D + TWSLVP + KWV
Sbjct: 865 RYALIVSKSSFDEPKTITTAMKHPSWNAAVMDEIDRIHMLNTWSLVPATEDMNILTSKWV 924
Query: 1040 FRVKHNPDGTLNKYKARLVAKGFHQQPGFDYTETFSPVIKPVTIRVILTLALTNHWTIQQ 1099
F+ K PDGT++K KARLVAKGF Q+ G DY ETFSPV++ TIR++L A N W ++Q
Sbjct: 925 FKTKLKPDGTIDKLKARLVAKGFDQEEGVDYLETFSPVVRTATIRLVLDTATANEWPLKQ 984
Query: 1100 LDVNNAFLNGDLAEEVYMQQPQGFEHDKK--LVCRLHKALYGLKQAPRAWFEKLTSALVQ 1157
LDV+NAFL+G+L E V+M QP GF K VCRL KALYGLKQAPRAWF+ ++ L+
Sbjct: 985 LDVSNAFLHGELQEPVFMFQPSGFVDPNKPNHVCRLTKALYGLKQAPRAWFDTFSNFLLD 1044
Query: 1158 FGFVASKCDPSLFV 1171
FGF S DPSLFV
Sbjct: 1045 FGFECSTSDPSLFV 1058
Score = 120 bits (301), Expect = 3e-25
Identities = 91/332 (27%), Positives = 146/332 (43%), Gaps = 41/332 (12%)
Query: 12 PASPLPPHRFKLPSLSTYTISEKLSDRNFLLWKQQVEPIIKAHNLHVLVQDPEIPP---R 68
PA P P + S++ KL+D N+LLWK Q E ++ + L V PP R
Sbjct: 3 PAYPFPDNVHVSSSVTL-----KLNDSNYLLWKTQFESLLSSQKLIGFVNGVVTPPAQTR 57
Query: 69 FVTERDRVAGTLNPAYSVWESKDQYLLSWLQSSLSTPVLSRMIGCAHSFQLWEKIHSFFH 128
V D + NP Y W DQ + SWL +LS VL + S Q+W + F+
Sbjct: 58 LVVNDDVTSEVPNPQYEDWFCTDQLVRSWLFGTLSEEVLGHVHNLTTSRQIWISLAENFN 117
Query: 129 NQTRAKSTQLRTELRSETLGNRTISEFLLQIKSIIDSLFAIGDPISPREHLDVILQGLPS 188
+ A+ LR L+ T ++++S + K I DSL +IG P+ + L GL
Sbjct: 118 KSSIAREFSLRRNLQLLTKKDKSLSVYCRDFKIICDSLSSIGKPVEESMKIFGFLNGLGR 177
Query: 189 DYEDLITLISTRFEEHSIDELEALLLAKEARLGKYRTPSATGEISVNVALSNPQTPSSSA 248
+Y+ + T+I + + ++ + K ++ T ++ ++A + ++ S +
Sbjct: 178 EYDPITTVIQSSLSKLPAPTFNDVISEVQGFDSKLQSYDDTVSVNPHLAFNTERSNSGA- 236
Query: 249 VSTQSASHTTSQGESQDSDPMDSYDSSGHGR-GSSRGRGARG-RGRGRSSIQ-------- 298
P + +S G GR G +RGRG RGRG S Q
Sbjct: 237 -------------------PQYNSNSRGRGRSGQNRGRGGYSTRGRGFSQHQSASPSSGQ 277
Query: 299 ---CQLCYKFGHDVWQCYHRFNPNFVPQKPPQ 327
CQ+C + GH +CY+RF+ N+ + P Q
Sbjct: 278 RPVCQICGRIGHTAIKCYNRFDNNYQSEVPTQ 309
>gb|AAK51235.1| polyprotein [Arabidopsis thaliana]
Length = 1453
Score = 539 bits (1389), Expect = e-151
Identities = 313/806 (38%), Positives = 440/806 (53%), Gaps = 73/806 (9%)
Query: 412 QTSTSTPQATSPAQSWYPDSGASHHVTSESQNVHQFTPFAGQDQLFVGNGQGLPISGIGS 471
Q +S + S + W PDS A+ HVTS + N+ +P+ G D + VG+G LPI+ +GS
Sbjct: 310 QAFSSLRVSDSSGKEWVPDSAATAHVTSSTNNLQAASPYNGSDTVLVGDGAYLPITHVGS 369
Query: 472 STLSSG---LVLNNLLHVPSITKNLVSVSKFARDN--GVFFEFHPYYCCVKSQASSKVLL 526
+T+SS L LN +L P I K+L+SVSK D GV+F+ + C+ + KV+
Sbjct: 370 TTISSDSGTLPLNEVLVCPDIQKSLLSVSKLCDDYPCGVYFDANKV--CIIDINTQKVVS 427
Query: 527 QGSVGADGLYKFHEFKLSHLPVSLSAPVQHPVSVHTSVSSSGHAPVEQPSVVSSVCTANL 586
+G ++GLY Q V+ +++ + + +
Sbjct: 428 KGP-RSNGLYVLEN--------------QEFVAFYSNRQCAA--------------SEEI 458
Query: 587 WHFRLGHPSLNVLRKALQFCKIPVSNKMDVDFCKACVMGKSHRLPSSLSTTEYTSPLELV 646
WH RLGH + +L++ +I + C+ C MGKS +L S + L +
Sbjct: 459 WHHRLGHSNSRILQQLKSSKEISFNKSRMSPVCEPCQMGKSSKLQFFSSNSRELDLLGRI 518
Query: 647 YSDLWGPSPSPSSSGYLYYITFIDAYSRYTWIYLLKAKSEAISAFHQFKASSELQLNAKI 706
+ DLWGPSP S G+ YY+ F+D YSRY+W Y LKAKS+ + F F+ E Q N KI
Sbjct: 519 HCDLWGPSPVVSKQGFKYYVVFVDDYSRYSWFYPLKAKSDFFAVFVAFQNLVENQFNTKI 578
Query: 707 KALQTDWGGEF--RVFPNFLKDFGIHHRLICPHTHHQNGVVERKHRHIVDLGLSLLAHAS 764
K Q+D GGEF + L D GI HR+ CP+T QNG+ ERKHRH V+LGLS++ H+
Sbjct: 579 KVFQSDGGGEFTSNLMKKHLTDCGIQHRISCPYTPQQNGIAERKHRHFVELGLSMMFHSH 638
Query: 765 IPLTYWDFAFSTAVYLINRLPTSSLQFDIPLYKLFKQIPDYTFLKVFGCTCFPLMRPYNS 824
PL +W AF TA +L N LP+ SL PL L KQ P+Y L+VFG C+P +RP
Sbjct: 639 TPLQFWVEAFFTASFLSNMLPSPSLGNVSPLEALLKQKPNYAMLRVFGTACYPCLRPLGE 698
Query: 825 HKLDFRSQECVFLGYSPSHRGYKCL-ASSGRIYISKDVIFDEHTFPYPK----------- 872
HK + RS +CVFLGY+ ++GY+CL +GR+YIS+ VIFDE TFP+ +
Sbjct: 699 HKFEPRSLQCVFLGYNSQYKGYRCLYPPTGRVYISRHVIFDEETFPFKQKYQFLVPQYES 758
Query: 873 --LFAQNSNSPSLSPAVVLPSLPSVEHFSQPAIAQPSS---------SLPSPFLPSPIAS 921
L A S+ P +++ P E ++A+P S + L + +
Sbjct: 759 SLLSAWQSSIPQADQSLI----PQAEEGKIESLAKPPSIQKNTIQDTTTQPAILTEGVLN 814
Query: 922 SDQNPSSTSPASAPATSEASAEIPSQVTIPTSSGQVSAPSSSGNVHPMITRSKNGIVQPR 981
++ S + +E + + + P N HPM TRSK GI +
Sbjct: 815 EEEEEDSFEETETESLNEETHTQNDEAEVTVEEEVQQEPE---NTHPMTTRSKAGIHKSN 871
Query: 982 VQPTLLTVQL---EPTTVKQALAHPQWLQAMQAEFDALQKNKTWSLVPLPPGREAIGCKW 1038
+ LLT + EP ++ +AL HP W A+ E + TWSLV +GC+W
Sbjct: 872 TRYALLTSKFSVEEPKSIDEALNHPGWNNAVNDEMRTIHMLHTWSLVQPTEDMNILGCRW 931
Query: 1039 VFRVKHNPDGTLNKYKARLVAKGFHQQPGFDYTETFSPVIKPVTIRVILTLALTNHWTIQ 1098
VF+ K PDG+++K KARLVAKGFHQ+ G DY ETFSPV++ TIR++L +A W I+
Sbjct: 932 VFKTKLKPDGSVDKLKARLVAKGFHQEEGLDYLETFSPVVRTATIRLVLDVATAKGWNIK 991
Query: 1099 QLDVNNAFLNGDLAEEVYMQQPQGFEHDKK--LVCRLHKALYGLKQAPRAWFEKLTSALV 1156
QLDV+NAFL+G+L E VYM QP GF +K VCRL KALYGLKQAPRAWF+ +++ L+
Sbjct: 992 QLDVSNAFLHGELKEPVYMLQPPGFVDQEKPSYVCRLTKALYGLKQAPRAWFDTISNYLL 1051
Query: 1157 QFGFVASKCDPSLFVLSKKPLVIYVL 1182
FGF SK DPSLF K + +L
Sbjct: 1052 DFGFSCSKSDPSLFTYHKNGKTLVLL 1077
Score = 107 bits (267), Expect = 2e-21
Identities = 83/307 (27%), Positives = 131/307 (42%), Gaps = 35/307 (11%)
Query: 30 TISEKLSDRNFLLWKQQVEPIIKAHNLHVLVQDPEIPPRF---VTERDRVAGTLNPAYSV 86
+++ KL+D N+LLWK Q E ++ H L V PP V D NP Y
Sbjct: 16 SVTLKLNDSNYLLWKTQFESLLSCHKLIGFVNGGITPPPRTLNVVTGDTSVDVANPQYES 75
Query: 87 WESKDQYLLSWLQSSLSTPVLSRMIGCAHSFQLWEKIHSFFHNQTRAKSTQLRTELRSET 146
W DQ + SWL +LS VL + S +W + F+ + A+ LR L+ +
Sbjct: 76 WFCTDQLIRSWLFGTLSEEVLGYVHNLQTSRDIWISLAENFNKSSVAREFTLRRTLQLLS 135
Query: 147 LGNRTISEFLLQIKSIIDSLFAIGDPISPREHLDVILQGLPSDYEDLITLISTRFEEHSI 206
++T+S + + ++ D+L +IG P+ + L GL +Y+ + T+I
Sbjct: 136 KKDKTLSAYCREFIAVCDALSSIGKPVDESMKIFGFLNGLGREYDPITTVI--------- 186
Query: 207 DELEALLLAKEARLGKYRTPSATGEIS-VNVALSNPQTPSSSAVSTQSASHTTSQGESQD 265
++ L K P+ IS V Q+ S + + T + E D
Sbjct: 187 ----------QSSLSKISPPTFRDVISEVKGFDVKLQSYEESVTANPHMAFNTQRSEYTD 236
Query: 266 SDPMDSYDSSGHGRGSSRGR-GARGRGRGRSSIQ-----------CQLCYKFGHDVWQCY 313
+ + G G +RGR G RGRG S Q CQ+C + GH +CY
Sbjct: 237 NYTSGNRGKGRGGYGQNRGRSGYSTRGRGFSQHQTNSNNTGERPVCQICGRTGHTALKCY 296
Query: 314 HRFNPNF 320
+RF+ N+
Sbjct: 297 NRFDHNY 303
>gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 protease homolog from
Arabidopsis thaliana BAC gb|AF080119 and is a member of
the reverse transcriptase family PF|00078
gi|25301706|pir||C86438 hypothetical protein F28K20.17 -
Arabidopsis thaliana
Length = 1415
Score = 538 bits (1387), Expect = e-151
Identities = 311/777 (40%), Positives = 439/777 (56%), Gaps = 64/777 (8%)
Query: 425 QSWYPDSGASHHVTSESQNVHQFTPFAGQDQLFVGNGQGLPISGIGSSTLSSG---LVLN 481
+ W+PDS A+ HVTS + + T + G D + VG+G LPI+ GS+T+ S + LN
Sbjct: 320 KEWHPDSAATAHVTSSTNGLQSATEYEGDDAVLVGDGTYLPITHTGSTTIKSSNGKIPLN 379
Query: 482 NLLHVPSITKNLVSVSKFARDN--GVFFEFHPYYCCVKSQASSKVLLQGSVGADGLYKFH 539
+L VP+I K+L+SVSK D GV+F+ + C+ + KV+ G +GLY
Sbjct: 380 EVLVVPNIQKSLLSVSKLCDDYPCGVYFDANKV--CIIDLQTQKVVTTGP-RRNGLYVLE 436
Query: 540 EFKLSHLPVSLSAPVQHPVSVHTSVSSSGHAPVEQPSVVSSVCTANLWHFRLGHPSLNVL 599
Q V+++++ + T +WH RLGH + L
Sbjct: 437 N--------------QEFVALYSNRQCAA--------------TEEVWHHRLGHANSKAL 468
Query: 600 RKALQFCKIPVSNKMDVDFCKACVMGKSHRLPSSLSTTEYTSPLELVYSDLWGPSPSPSS 659
+ I ++ C+ C MGKS RLP +S + PL+ ++ DLWGPSP S+
Sbjct: 469 QHLQNSKAIQINKSRTSPVCEPCQMGKSSRLPFLISDSRVLHPLDRIHCDLWGPSPVVSN 528
Query: 660 SGYLYYITFIDAYSRYTWIYLLKAKSEAISAFHQFKASSELQLNAKIKALQTDWGGEF-- 717
G YY F+D YSRY+W Y L KSE +S F F+ E QLN KIK Q+D GGEF
Sbjct: 529 QGLKYYAIFVDDYSRYSWFYPLHNKSEFLSVFISFQKLVENQLNTKIKVFQSDGGGEFVS 588
Query: 718 RVFPNFLKDFGIHHRLICPHTHHQNGVVERKHRHIVDLGLSLLAHASIPLTYWDFAFSTA 777
L + GIHHR+ CP+T QNG+ ERKHRH+V+LGLS+L H+ P +W +F TA
Sbjct: 589 NKLKTHLSEHGIHHRISCPYTPQQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFFTA 648
Query: 778 VYLINRLPTSSLQFDIPLYKLFKQIPDYTFLKVFGCTCFPLMRPYNSHKLDFRSQECVFL 837
Y+INRLP+S L+ P LF + PDY+ L+VFG C+P +RP +K D RS +CVFL
Sbjct: 649 NYIINRLPSSVLKNLSPYEALFGEKPDYSSLRVFGSACYPCLRPLAQNKFDPRSLQCVFL 708
Query: 838 GYSPSHRGYKCL-ASSGRIYISKDVIFDEHTFPYPKLFAQNSNSPSLSPAVVLPSLPSVE 896
GY+ ++GY+C +G++YIS++VIF+E P+ + + SL P P L + +
Sbjct: 709 GYNSQYKGYRCFYPPTGKVYISRNVIFNESELPFKEKY------QSLVPQYSTPLLQAWQ 762
Query: 897 HFSQPAIAQPSSSLPSPFLPSPI-----ASSDQNPSSTSPASAPATSEASAEI-PSQVTI 950
H I+ P++ P PI A S T P + E+ P I
Sbjct: 763 HNKISEISVPAA--PVQLFSKPIDLNTYAGSQVTEQLTDPEPTSNNEGSDEEVNPVAEEI 820
Query: 951 PTSSGQVSAPSSSGNVHPMITRSKNGIVQPRVQPTLLTVQL---EPTTVKQALAHPQWLQ 1007
+ QV N H M TRSK GI +P + L+T ++ EP T+ A+ HP W +
Sbjct: 821 AANQEQVI------NSHAMTTRSKAGIQKPNTRYALITSRMNTAEPKTLASAMKHPGWNE 874
Query: 1008 AMQAEFDALQKNKTWSLVPLPPGREAIGCKWVFRVKHNPDGTLNKYKARLVAKGFHQQPG 1067
A+ E + + TWSLVP + KWVF+ K +PDG+++K KARLVAKGF Q+ G
Sbjct: 875 AVHEEINRVHMLHTWSLVPPTDDMNILSSKWVFKTKLHPDGSIDKLKARLVAKGFDQEEG 934
Query: 1068 FDYTETFSPVIKPVTIRVILTLALTNHWTIQQLDVNNAFLNGDLAEEVYMQQPQGFEHDK 1127
DY ETFSPV++ TIR++L ++ + W I+QLDV+NAFL+G+L E V+M QP GF +
Sbjct: 935 VDYLETFSPVVRTATIRLVLDVSTSKGWPIKQLDVSNAFLHGELQEPVFMYQPSGFIDPQ 994
Query: 1128 K--LVCRLHKALYGLKQAPRAWFEKLTSALVQFGFVASKCDPSLFVLSKKPLVIYVL 1182
K VCRL KA+YGLKQAPRAWF+ ++ L+ +GFV SK DPSLFV + ++Y+L
Sbjct: 995 KPTHVCRLTKAIYGLKQAPRAWFDTFSNFLLDYGFVCSKSDPSLFVCHQDGKILYLL 1051
Score = 115 bits (288), Expect = 9e-24
Identities = 92/339 (27%), Positives = 149/339 (43%), Gaps = 47/339 (13%)
Query: 28 TYTISEKLSDRNFLLWKQQVEPIIKAHNLHVLVQDPEIPP---RFVTERDRVAGTLNPAY 84
T +++ KL+D N+LLWK Q E ++ + L V P R V + + NP Y
Sbjct: 14 TSSVTLKLTDSNYLLWKTQFESLLSSQKLIGFVNGAVNAPSQSRLVVNGEVTSEEPNPLY 73
Query: 85 SVWESKDQYLLSWLQSSLSTPVLSRMIGCAHSFQLWEKIHSFFHNQTRAKSTQLRTELRS 144
W DQ + SWL +LS VL + + S Q+W + F+ + A+ LR L+
Sbjct: 74 ESWFCTDQLVRSWLFGTLSEEVLGHVHNLSTSRQIWVSLAENFNKSSVAREFSLRQNLQL 133
Query: 145 ETLGNRTISEFLLQIKSIIDSLFAIGDPISPREHLDVILQGLPSDYEDLITLISTRFEEH 204
+ + S + + K+I D+L +IG P+ + L GL DY+ + T+I
Sbjct: 134 LSKKEKPFSVYCREFKTICDALSSIGKPVDESMKIFGFLNGLGRDYDPITTVI------- 186
Query: 205 SIDELEALLLAKEARLGKYRTPSATGEISVNVALSNPQTPSSSAVSTQSASHTTSQ---- 260
++ L K TP + N +S Q S S + A+ T
Sbjct: 187 ------------QSSLSKLPTP------TFNDVVSEVQGFDSKLQSYEEAASVTPHLAFN 228
Query: 261 -GESQDSDPMDSYDSSGHGR-GSSRGRGARG-RGRGRSSIQ-----------CQLCYKFG 306
S+ P + + G GR G ++GRG RGRG S Q CQ+C + G
Sbjct: 229 IERSESGSPQYNPNQKGRGRSGQNKGRGGYSTRGRGFSQHQSSPQVSGPRPVCQICGRTG 288
Query: 307 HDVWQCYHRFNPNFVPQKPPQNSPQNSQWNSSPQWHSNS 345
H +CY+RF+ N+ + ++ + S ++ +WH +S
Sbjct: 289 HTALKCYNRFDNNYQAEIQAFSTLRVSD-DTGKEWHPDS 326
>gb|AAP54850.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37536522|ref|NP_922563.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|13310887|gb|AAG13591.2| putative gag/pol polyprotein
[Oryza sativa]
Length = 1417
Score = 521 bits (1343), Expect = e-146
Identities = 385/1201 (32%), Positives = 559/1201 (46%), Gaps = 157/1201 (13%)
Query: 7 PPPPPPASPLPPHRFKLPSLSTYTISEKLSDRNFLLWKQQVEPIIKAHNLHVLVQDPEIP 66
P P P S L + S + L N+ W+ E ++ L VQ+P
Sbjct: 18 PVPAPSTSVLQTVNIR----SHVPVVLDLDVSNYSQWRCSFESVLGKFGLEAHVQEPP-- 71
Query: 67 PRFVTERDRVAGTLNPAYSVWESKDQYLLSWLQSSLSTPVLSRMIGC-AHSFQLWEKIHS 125
L+ + W D +++WL +S++ V + A +F +W I
Sbjct: 72 ------------ALDLRTAEWRRADHCVVNWLHNSIAKNVFDVVYKPRASAFTVWSDIEG 119
Query: 126 FFHNQTRAKSTQLRTELRSETLGNRTISEFLLQIKSIIDSLFAIGDPISPREHLDVILQG 185
F + +S L TE RS G+ TI+++ ++K + D L I P+S + +L+G
Sbjct: 120 VFRDNAVQRSVYLETEFRSINQGDMTITQYTAKLKQLADGLRDINMPVSEPSQVLNLLRG 179
Query: 186 LPSDYEDLITLISTRFEEHSIDELEALLLAKEARLGKYRTPSATGEISVNVALSNPQTPS 245
L + + L I+ R H+ + LL E ++ ++ + GE
Sbjct: 180 LNTKFRSLRASIADRNPPHTFMTARSYLLLAELQM-QHDAKAEAGE-------------- 224
Query: 246 SSAVSTQSASHTTSQGESQDSDPMDSYDSSGHGRGSSRGRGARGRGRGRSSIQCQLCYKF 305
+ T S+S T+ D++G R RG+ RGRG G
Sbjct: 225 ALYAGTGSSSGTS--------------DTTGQPRPKGRGK-RRGRGGGAP---------- 259
Query: 306 GHDVWQCYHRFNPNFVPQKPPQNSPQNSQWNSSPQ--WHSNSQWSSTPQWNSQWSAPVSS 363
P P P + P W N W + AP +
Sbjct: 260 ------------PGGAPSTPGGGAGAGHDGQPRPPAPWGYNPWTGFVQAWPFPFRAPGAG 307
Query: 364 ------PWQHSSSQWP----PRYPPAPSGYAPMASSPGVPYRGPAPSPMGYAQAHVAFQT 413
P+Q + P PPA SPGV G + Y+ A
Sbjct: 308 VLGPRPPFQAQQAMTAQHLLPALPPA---------SPGVHSTGAWDNSALYSALQSAGVA 358
Query: 414 STSTPQATSPAQSWYPDSGASHHVTSESQNVHQFTPFAGQDQLFVGNGQGLPISGIGSS- 472
+T+ P A W+ D+GAS H++S + P + VGNG LP++ S+
Sbjct: 359 TTTPPSAAD----WFLDTGASAHMSSTPGILAHPRPLPFSSCITVGNGAKLPVTHTASTH 414
Query: 473 --TLSSGLVLNNLLHVPSITKNLVSVSKFARDNGVFFEFHPYYCCVKSQASSKVLLQGSV 530
T S+ L L+N+L P + KNL+SV K RDN V EF P +K + V L+
Sbjct: 415 IPTSSTDLHLHNVLVSPPLIKNLISVKKLTRDNNVSIEFDPTGFSIKDLQTQVVKLRCDS 474
Query: 531 GADGLYKFHEFKLSHLPVSLSAPVQHPVSVHTSVSSSGHAPVEQPSVVSSVCTANLWHFR 590
D LY P+ L +P H +S +S PSV WH R
Sbjct: 475 PGD-LY----------PLRLPSP--HALSATSS-----------PSVEH-------WHLR 503
Query: 591 LGHPSLNVLRKALQFCKIPVSNKMDVDFCKACVMGKSHRLPSSLSTTEYTSPLELVYSDL 650
LGHP L K L NK C AC +G + RLP S+++ P +LV++D+
Sbjct: 504 LGHPGSASLSKVLGSFDFQC-NKSAPHHCSACHVGTNVRLPFHSSSSQTLFPFQLVHTDV 562
Query: 651 WGPSPSPSSSGYLYYITFIDAYSRYTWIYLLKAKSEAISAFHQFKASSELQLNAKIKALQ 710
W SP S+SGY YY+ F+D ++ Y W + ++ KSE F A + Q + ALQ
Sbjct: 563 W-TSPIYSNSGYKYYVVFLDDFTHYIWTFPVRNKSEVFHTVRSFFAYAHTQFGLPVLALQ 621
Query: 711 TDWGGEFRVFP--NFLKDFGIHHRLICPHTHHQNGVVERKHRHIVDLGLSLLAHASIPLT 768
TD G E+ + + L G RL CP++ QNG ER R I D ++L H++ PL+
Sbjct: 622 TDNGKEYDSYALRSLLSLHGAVLRLSCPYSSQQNGKAERILRTINDYVRTMLVHSAAPLS 681
Query: 769 YWDFAFSTAVYLINRLPTSSLQFDIPLYKLFKQIPDYTFLKVFGCTCFPLMRPYNSHKLD 828
+W A TA +LINR P + P L P Y L+VFGC C+P HKL
Sbjct: 682 FWAEALQTATHLINRRPCRATGSLTPYQLLLGAPPTYDHLRVFGCLCYPNTIATAPHKLS 741
Query: 829 FRSQECVFLGYSPSHRGYKCLAS-SGRIYISKDVIFDEHTFPYPKLFAQNSNSPSLSPAV 887
RS CVF+GY HRGY+C S R++ S+ V F E FP+ ++PS P+
Sbjct: 742 PRSLACVFIGYPADHRGYRCYDMVSRRVFTSRHVTFVEDVFPF-------RDAPSPRPSA 794
Query: 888 VLPSLPSVEHFSQPAIAQPSSSLPSPFLPSPIASSDQNPSSTSPASAPATSEASAEIPSQ 947
P +H + P+ P+ + +P+ ++ + +++ P+ PA+S S+ P+
Sbjct: 795 P----PPPDHGDDTIVLLPA---PAQHVVTPVGTAPAHDAASPPS--PASSTPSSAAPAH 845
Query: 948 VTIPTSSGQVSAPSSSGNV-HPMITRSKNGIVQPRVQPTLL---TVQLEPTTVKQALAHP 1003
P S + S+P+S+ H M TR++ GI +P + + T+ P++V+ AL P
Sbjct: 846 DVAPPPSPETSSPASASPPRHAMTTRARAGISKPNPRYAMTATSTLSPTPSSVRAALRDP 905
Query: 1004 QWLQAMQAEFDALQKNKTWSLVPLPPGREAIGCKWVFRVKHNPDGTLNKYKARLVAKGFH 1063
W AMQAEFDAL N+TW+LVP PPG I KWVF+ K + DG+L+KYKAR V +GF+
Sbjct: 906 NWRAAMQAEFDALLANRTWTLVPRPPGARIITGKWVFKTKLHADGSLDKYKARWVVRGFN 965
Query: 1064 QQPGFDYTETFSPVIKPVTIRVILTLALTNHWTIQQLDVNNAFLNGDLAEEVYMQQPQGF 1123
Q+PG D+ ETFSPV+KP TIR +LTL + W QLDV+NAFL+G L E V QQP GF
Sbjct: 966 QRPGVDFGETFSPVVKPATIRTVLTLISSKQWPAHQLDVSNAFLHGHLQERVLCQQPTGF 1025
Query: 1124 EHDKKL--VCRLHKALYGLKQAPRAWFEKLTSALVQFGFVASKCDPSLFVLSKKPLVIYV 1181
E + VC L ++LYGL+QAPRAWF++ GFV S+ DPSLFVL + Y+
Sbjct: 1026 EDAARPADVCLLSRSLYGLRQAPRAWFKRFADHATSLGFVQSRADPSLFVLRRGSDTAYL 1085
Query: 1182 L 1182
L
Sbjct: 1086 L 1086
>gb|AAP51971.1| putative copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530764|ref|NP_919684.1| putative
copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|20042923|gb|AAM08751.1| Putative
copia-type polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1803
Score = 521 bits (1341), Expect = e-146
Identities = 385/1201 (32%), Positives = 560/1201 (46%), Gaps = 157/1201 (13%)
Query: 7 PPPPPPASPLPPHRFKLPSLSTYTISEKLSDRNFLLWKQQVEPIIKAHNLHVLVQDPEIP 66
P P P S L + S + L N+ W+ E ++ L VQ+P
Sbjct: 18 PVPAPSTSVLQTVNIR----SHVPVVLDLDVSNYSQWRCSFESVLGKFGLEAHVQEPP-- 71
Query: 67 PRFVTERDRVAGTLNPAYSVWESKDQYLLSWLQSSLSTPVLSRMIGC-AHSFQLWEKIHS 125
L+ + W D +++WL +S++ V + A +F +W I
Sbjct: 72 ------------ALDLRTAEWRRADHCVVNWLHNSIAKNVFDVVYKPRASAFTVWSDIEG 119
Query: 126 FFHNQTRAKSTQLRTELRSETLGNRTISEFLLQIKSIIDSLFAIGDPISPREHLDVILQG 185
F + +S L TE RS G+ TI+++ ++K + D L I P+S + +L+G
Sbjct: 120 VFRDNAVQRSVYLETEFRSINQGDMTITQYTAKLKQLADGLRDINMPVSEPSQVLNLLRG 179
Query: 186 LPSDYEDLITLISTRFEEHSIDELEALLLAKEARLGKYRTPSATGEISVNVALSNPQTPS 245
L + + L I+ R H+ + LL E ++ ++ + GE
Sbjct: 180 LNTKFRSLRASIADRNPPHTFMTARSYLLLAELQM-QHDAKAEAGE-------------- 224
Query: 246 SSAVSTQSASHTTSQGESQDSDPMDSYDSSGHGRGSSRGRGARGRGRGRSSIQCQLCYKF 305
+ T S+S T+ D++G R RG+ RGRG G
Sbjct: 225 ALYAGTGSSSGTS--------------DTTGQPRPKGRGK-RRGRGGGAP---------- 259
Query: 306 GHDVWQCYHRFNPNFVPQKPPQNSPQNSQWNSSPQ--WHSNSQWSSTPQWNSQWSAPVSS 363
P P P + P W N W + AP +
Sbjct: 260 ------------PGGAPSTPGGGAGAGHDGQPRPPAPWGYNPWTGFVQAWPFPFRAPGAG 307
Query: 364 ------PWQHSSSQWP----PRYPPAPSGYAPMASSPGVPYRGPAPSPMGYAQAHVAFQT 413
P+Q + P PPA SPGV G + Y+ A
Sbjct: 308 VLGPRPPFQAQQAMTAQHLLPALPPA---------SPGVHSTGAWDNSALYSALQSAGVA 358
Query: 414 STSTPQATSPAQSWYPDSGASHHVTSESQNVHQFTPFAGQDQLFVGNGQGLPISGIGSS- 472
+T+ P A W+ D+GAS H++S + P + VGNG LP++ S+
Sbjct: 359 TTTPPSAAD----WFLDTGASAHMSSTPGILAHPRPLPFSSCITVGNGAKLPVTHTASTH 414
Query: 473 --TLSSGLVLNNLLHVPSITKNLVSVSKFARDNGVFFEFHPYYCCVKSQASSKVLLQGSV 530
T S+ L L+N+L P + KNL+SV K RDN V EF P +K + V L+
Sbjct: 415 IPTSSTDLHLHNVLVSPPLIKNLISVKKLTRDNNVSIEFDPTGFSIKDLQTQVVKLRCDS 474
Query: 531 GADGLYKFHEFKLSHLPVSLSAPVQHPVSVHTSVSSSGHAPVEQPSVVSSVCTANLWHFR 590
D LY P+ L +P H +S +S PSV WH R
Sbjct: 475 PGD-LY----------PLRLPSP--HALSATSS-----------PSVEH-------WHLR 503
Query: 591 LGHPSLNVLRKALQFCKIPVSNKMDVDFCKACVMGKSHRLPSSLSTTEYTSPLELVYSDL 650
LGHP L K L NK C AC +G + RLP S+++ P +LV++D+
Sbjct: 504 LGHPGSASLSKVLGSFDFQC-NKSAPHHCSACHVGTNVRLPFHSSSSQTLFPFQLVHTDV 562
Query: 651 WGPSPSPSSSGYLYYITFIDAYSRYTWIYLLKAKSEAISAFHQFKASSELQLNAKIKALQ 710
W SP S+SGY YY+ F+D ++ Y W + ++ KSE F A + Q + ALQ
Sbjct: 563 W-TSPIYSNSGYKYYVVFLDDFTHYIWTFPVRNKSEVFHTVRSFFAYAHTQFGLPVLALQ 621
Query: 711 TDWGGEFRVFP--NFLKDFGIHHRLICPHTHHQNGVVERKHRHIVDLGLSLLAHASIPLT 768
TD G E+ + + L G RL CP++ QNG ER R I D ++L H++ PL+
Sbjct: 622 TDNGKEYDSYALRSLLSLHGAVLRLSCPYSSQQNGKAERILRTINDCVRTMLVHSAAPLS 681
Query: 769 YWDFAFSTAVYLINRLPTSSLQFDIPLYKLFKQIPDYTFLKVFGCTCFPLMRPYNSHKLD 828
+W A TA++LINR P + P L P Y L+VFGC C+P HKL
Sbjct: 682 FWAEALQTAMHLINRRPCRATGSLKPYQLLLGAPPTYDHLRVFGCLCYPNTIATAPHKLS 741
Query: 829 FRSQECVFLGYSPSHRGYKCLAS-SGRIYISKDVIFDEHTFPYPKLFAQNSNSPSLSPAV 887
RS CVF+GY HRGY+C S R++ S+ V F E FP+ ++PS P+
Sbjct: 742 PRSLACVFIGYPADHRGYRCYDMVSRRVFTSRHVTFVEDVFPF-------RDAPSPRPSA 794
Query: 888 VLPSLPSVEHFSQPAIAQPSSSLPSPFLPSPIASSDQNPSSTSPASAPATSEASAEIPSQ 947
P +H + P+ P+ + +P+ ++ + +++ P+ PA+S S+ P+
Sbjct: 795 P----PPPDHGDDTIVLLPA---PAQHVVTPVGTAPAHDAASPPS--PASSTPSSAAPAH 845
Query: 948 VTIPTSSGQVSAPSSSGNV-HPMITRSKNGIVQPRVQPTLL---TVQLEPTTVKQALAHP 1003
P S + S+P+S+ H M TR++ GI +P + + T+ P++V+ AL P
Sbjct: 846 DVAPPPSPETSSPASASPPRHAMTTRARAGISKPNPRYAMTATSTLSPTPSSVRVALRDP 905
Query: 1004 QWLQAMQAEFDALQKNKTWSLVPLPPGREAIGCKWVFRVKHNPDGTLNKYKARLVAKGFH 1063
W AMQAEFDAL N+TW+LVP PPG I KWVF+ K + DG+L+KYKAR V +GF+
Sbjct: 906 NWRAAMQAEFDALLANRTWTLVPRPPGARIITGKWVFKTKLHADGSLDKYKARWVVRGFN 965
Query: 1064 QQPGFDYTETFSPVIKPVTIRVILTLALTNHWTIQQLDVNNAFLNGDLAEEVYMQQPQGF 1123
Q+PG D+ ETFSPV+KP TIR +LTL + W QLDV+NAFL+G L E V QQP GF
Sbjct: 966 QRPGVDFGETFSPVVKPATIRTVLTLISSKQWPAHQLDVSNAFLHGHLQERVLCQQPTGF 1025
Query: 1124 EHDKKL--VCRLHKALYGLKQAPRAWFEKLTSALVQFGFVASKCDPSLFVLSKKPLVIYV 1181
E + VC L ++LYGL+QAPRAWF++ GFV S+ DPSLFVL + Y+
Sbjct: 1026 EDAARPADVCLLSRSLYGLRQAPRAWFKRFADHATSLGFVQSRADPSLFVLRRGSDTAYL 1085
Query: 1182 L 1182
L
Sbjct: 1086 L 1086
>emb|CAB81478.1| putative protein [Arabidopsis thaliana] gi|4972079|emb|CAB43904.1|
putative protein [Arabidopsis thaliana]
gi|7444467|pir||T08945 hypothetical protein F25O24.20 -
Arabidopsis thaliana
Length = 1415
Score = 520 bits (1338), Expect = e-145
Identities = 316/824 (38%), Positives = 451/824 (54%), Gaps = 84/824 (10%)
Query: 410 AFQTSTSTPQATSPAQSWYPDSGASHHVTSESQNVHQFTPFAGQDQLFVGNGQGLPISGI 469
AF + Q ++P W DSGA+ H+T+ + + P++G+D + VGN LPI+ I
Sbjct: 279 AFAAMRVSDQKSNP---WVTDSGATSHITNSTSQLQSAQPYSGEDSVIVGNSDFLPITHI 335
Query: 470 GSSTLSSG---LVLNNLLHVPSITKNLVSVSKFARDNGVFFEFHPYYCCVKSQASSKVLL 526
GS+ L+S L L ++L P+ITK+L+SVSK D EF VK + + ++L
Sbjct: 336 GSAVLTSNQGNLPLRDVLVCPNITKSLLSVSKLTSDYPCVIEFDSDGVIVKDKLTKQLLT 395
Query: 527 QGSVGADGLYKFHEFKLSHLPVSLSAPVQHPVSVHTSVSSSGHAPVEQPSVVSSVCTANL 586
+G+ D LY K SS A ++ +
Sbjct: 396 KGTRHND-LYLLENPKFM-----------------ACYSSRQQATSDE-----------V 426
Query: 587 WHFRLGHPSLNVLRKALQFCKIPVSNKMDVDFCKACVMGKSHRLPSSLSTTEYTSPLELV 646
WH RLGHP+ +VL++ L+ I +S K C AC MGK +LP + S + LE V
Sbjct: 427 WHMRLGHPNQDVLQQLLRNKAIVIS-KTSHSLCDACQMGKICKLPFASSDFVSSRLLERV 485
Query: 647 YSDLWGPSPSPSSSGYLYYITFIDAYSRYTWIYLLKAKSEAISAFHQFKASSELQLNAKI 706
+ DLWGP+P SS G+ YY+ FID YSR+TW Y L+ KS+ S F F+ E Q KI
Sbjct: 486 HCDLWGPAPVVSSQGFRYYVIFIDNYSRFTWFYPLRLKSDFFSVFLTFQKMVENQCQQKI 545
Query: 707 KALQTDWGGEF--RVFPNFLKDFGIHHRLICPHTHHQNGVVERKHRHIVDLGLSLLAHAS 764
+ Q D GGEF F + L + GI + CP+T QNG+ ERKHRHI +LG S++
Sbjct: 546 ASFQCDGGGEFISNQFVSHLAECGIRQLISCPYTPQQNGIAERKHRHITELGSSMMFQGK 605
Query: 765 IPLTYWDFAFSTAVYLINRLPTSSLQFDIPLYK-LFKQIPDYTFLKVFGCTCFPLMRPYN 823
+P W AF T+ +L N LP+S L+ Y+ L + P YT L+VFGC C+P +RPY
Sbjct: 606 VPQFLWVEAFYTSNFLCNLLPSSVLKDQKSPYEVLMGKAPVYTSLRVFGCACYPNLRPYA 665
Query: 824 SHKLDFRSQECVFLGYSPSHRGYKCL-ASSGRIYISKDVIFDEHTFPYPKLFA---QNSN 879
S+K D +S CVF GY+ ++GYKC +G+IYI++ V+FDE F + +++ +N
Sbjct: 666 SNKFDPKSLLCVFTGYNEKYKGYKCFHPPTGKIYINRHVLFDESKFLFSDIYSDKVSGTN 725
Query: 880 SPSLSP------AVVLPSLPSVEHFSQPAIA--------------------QPSSSLP-S 912
S +S +P+ P V S A + S+P
Sbjct: 726 STLVSAWQSNFLPKSIPATPEVLDISNTAASFSDEQGEFSGAVGGGGCGCTADLDSVPIG 785
Query: 913 PFLPSPIASSDQNPSSTSPASAPAT---------SEASAEIPSQVTIPTSSGQVSAPSSS 963
LPS + +P +P S+ + SE S S V ++ +A +++
Sbjct: 786 NSLPSSPVTQQNSPQPETPISSAGSGNDAEDSELSENSENSESSVFSEATTETEAADNTN 845
Query: 964 GNVHPMITRSKNGIVQPRVQPTLLTVQLE---PTTVKQALAHPQWLQAMQAEFDALQKNK 1020
HPMITRSK+GI +P + + TV+ P TVK AL P W AM E+D+ ++
Sbjct: 846 DQSHPMITRSKSGIFKPNPKYAMFTVKSNYPVPKTVKTALKDPGWTDAMGEEYDSFEETH 905
Query: 1021 TWSLVPLPPGREAIGCKWVFRVKHNPDGTLNKYKARLVAKGFHQQPGFDYTETFSPVIKP 1080
TW LVP +GC+WVF+ K DGTL++ KARLVAKG+ Q+ G DY ET+SPV++
Sbjct: 906 TWDLVPPDSFITPLGCRWVFKTKLKADGTLDRLKARLVAKGYEQEEGVDYMETYSPVVRT 965
Query: 1081 VTIRVILTLALTNHWTIQQLDVNNAFLNGDLAEEVYMQQPQGFEHDKK--LVCRLHKALY 1138
T+R IL +A N W I+QLDV NAFL+GDL E VYM QP GFE+ + VC+L+KA+Y
Sbjct: 966 ATVRTILHVATINKWEIKQLDVKNAFLHGDLKETVYMYQPPGFENQDRPDYVCKLNKAIY 1025
Query: 1139 GLKQAPRAWFEKLTSALVQFGFVASKCDPSLFVLSKKPLVIYVL 1182
GLKQAPRAWF+K ++ L++FGF+ + DPSLFV K ++++L
Sbjct: 1026 GLKQAPRAWFDKFSTFLLEFGFICTYSDPSLFVFLKGRDLMFLL 1069
Score = 90.1 bits (222), Expect = 4e-16
Identities = 68/298 (22%), Positives = 124/298 (40%), Gaps = 45/298 (15%)
Query: 28 TYTISEKLSDRNFLLWKQQVEPIIKAHNLHVLVQDPEIPP---RFVTERDRVAGTLNPAY 84
++ ++ KLS N+LLWK Q E + L V P R + D+V NP +
Sbjct: 14 SHYVTLKLSTANYLLWKIQFETWLNNQRLLGFVTGANPCPNATRSIRNGDQVTEATNPDF 73
Query: 85 SVWESKDQYLLSWLQSSLSTPVLSRMIGCAHSFQLWEKIHSFFHNQTRAKSTQLRTELRS 144
W DQ ++ WL SLS L + G S ++W + ++ + ++ + L+ L
Sbjct: 74 LTWVQNDQKIMGWLLGSLSEDALRSVYGLHTSREVWFSLAKKYNRVSASRKSDLQRRLNP 133
Query: 145 ETLGNRTISEFLLQIKSIIDSLFAIGDPISPREHLDVILQGLPSDYEDLITLISTRFEEH 204
+ +++ E+L +K I D L +IG P+ E + +L GL +Y + T+I + +
Sbjct: 134 VSKNEKSMLEYLNCVKQICDQLDSIGCPVPENEKIFGVLNGLGQEYMLVSTMIKGSMDTY 193
Query: 205 --SIDELEALLLAKEARLGKYRTPSATGEISVNVALSNPQTPSSSAVSTQSASHTTSQGE 262
S +++ L+ + +L G+
Sbjct: 194 PMSFEDVVFKLINFDDKL--------------------------------------QNGQ 215
Query: 263 SQDSDPMDSYDSSGHGRGSSRGRGARGRGRGRSSIQCQLCYKFGHDVWQCYHRFNPNF 320
S + ++Y + G G G+ R + CQ+C K+GH ++C+ RF+ F
Sbjct: 216 SGGNRGRNNYTTKGRGFPQQISSGSPSDSGTRPT--CQICNKYGHSAYKCWKRFDHAF 271
>emb|CAB81170.1| retrotransposon like protein [Arabidopsis thaliana]
gi|4539447|emb|CAB40035.1| retrotransposon like protein
[Arabidopsis thaliana] gi|7444419|pir||T04204
hypothetical protein T4F9.150 - Arabidopsis thaliana
Length = 1515
Score = 508 bits (1309), Expect = e-142
Identities = 320/840 (38%), Positives = 445/840 (52%), Gaps = 102/840 (12%)
Query: 410 AFQTSTSTPQATSPAQSWYPDSGASHHVTSESQNVHQFTPFAGQDQLFVGNGQGLPISGI 469
AF + Q + + W PDS A+ H+T+ + + ++G D + VGNG LPI+ I
Sbjct: 307 AFAAMRVSDQNQASSHEWLPDSAATAHITNTTDGLQNSQTYSGDDSVIVGNGDFLPITHI 366
Query: 470 GSSTLSSG---LVLNNLLHVPSITKNLVSVSKFARDNGVFFEFHPYYCCVKSQASSKVLL 526
G+ L+ L L ++L P ITK+L+SVSK D F F +K + + ++L
Sbjct: 367 GTIPLNISQGTLPLEDVLVCPGITKSLLSVSKLTDDYPCSFTFDSDSVVIKDKRTQQLLT 426
Query: 527 QGSVGADGLYKFHEFKLSHLPVSLSAPVQHPVSVHTSVSSSGHAPVEQPSVVSSVCTANL 586
QG+ GLY V P Q S S +
Sbjct: 427 QGNKHK-GLY-----------VLKDVPFQTYYSTRQQSSDD-----------------EV 457
Query: 587 WHFRLGHPSLNVLRKALQFCKIPVSNKMDVDFCKACVMGKSHRLPSSLSTTEYTSPLELV 646
WH RLGHP+ VL+ ++ K V NK + C+AC MGK RLP S + PLE +
Sbjct: 458 WHQRLGHPNKEVLQHLIK-TKAIVVNKTSSNMCEACQMGKVCRLPFVASEFVSSRPLERI 516
Query: 647 YSDLWGPSPSPSSSGYLYYITFIDAYSRYTWIYLLKAKSEAISAFHQFKASSELQLNAKI 706
+ DLWGP+P S+ G+ YY+ FID YSR+TW Y LK KS+ S F F+ E Q KI
Sbjct: 517 HCDLWGPAPVTSAQGFQYYVIFIDNYSRFTWFYPLKLKSDFFSVFVLFQQLVENQYQHKI 576
Query: 707 KALQTDWGGEF--RVFPNFLKDFGIHHRLICPHTHHQNGVVERKHRHIVDLGLSLLAHAS 764
Q D GGEF F L GI + CPHT QNG+ ER+HR++ +LGLSL+ H+
Sbjct: 577 AMFQCDGGGEFVSYKFVAHLASCGIKQLISCPHTPQQNGIAERRHRYLTELGLSLMFHSK 636
Query: 765 IPLTYWDFAFSTAVYLINRLPTSSLQFDIPLYKLFKQIPD-YTFLKVFGCTCFPLMRPYN 823
+P W AF T+ +L N LP+S+L + Y++ P YT L+VFG C+P +RPY
Sbjct: 637 VPHKLWVEAFFTSNFLSNLLPSSTLSDNKSPYEMLHGTPPVYTALRVFGSACYPYLRPYA 696
Query: 824 SHKLDFRSQECVFLGYSPSHRGYKCL-ASSGRIYISKDVIFDEHTFPYPKLFAQ---NSN 879
+K D +S CVFLGY+ ++GY+CL +G++YI + V+FDE FPY +++Q S
Sbjct: 697 KNKFDPKSLLCVFLGYNNKYKGYRCLHPPTGKVYICRHVLFDERKFPYSDIYSQFQTISG 756
Query: 880 SP-------SLSPAVVLPSLPS--VEHFSQPAIAQPSSSLPSPFL--------------- 915
SP S + PS VE P+ A SSS+P+
Sbjct: 757 SPLFTAWQKGFSSTALSRETPSTNVEDIIFPS-ATVSSSVPTGCAPNIAETATAPDVDVA 815
Query: 916 --------PSPIAS-----------SDQNPSSTSPASAPATSEASAEIPSQVTI------ 950
PSPI S SDQN ST T+ +SA P + +
Sbjct: 816 AAHDMVVPPSPITSTSLPTQPEESTSDQNHYSTD----SETAISSAMTPQSINVSLFEDS 871
Query: 951 ---PTSSGQVSAPSSSGNVHPMITRSKNGIVQPRVQPTLLTVQL---EPTTVKQALAHPQ 1004
P S S ++ HPMITR+K+GI +P + L +V+ EP +VK+AL
Sbjct: 872 DFPPLQSVISSTTAAPETSHPMITRAKSGITKPNPKYALFSVKSNYPEPKSVKEALKDEG 931
Query: 1005 WLQAMQAEFDALQKNKTWSLVPLPPGREAIGCKWVFRVKHNPDGTLNKYKARLVAKGFHQ 1064
W AM E + + TW LVP +GCKWVF+ K N DG+L++ KARLVA+G+ Q
Sbjct: 932 WTNAMGEEMGTMHETDTWDLVPPEMVDRLLGCKWVFKTKLNSDGSLDRLKARLVARGYEQ 991
Query: 1065 QPGFDYTETFSPVIKPVTIRVILTLALTNHWTIQQLDVNNAFLNGDLAEEVYMQQPQGFE 1124
+ G DY ET+SPV++ T+R IL +A N W+++QLDV NAFL+ +L E V+M QP GFE
Sbjct: 992 EEGVDYVETYSPVVRSATVRSILHVATINKWSLKQLDVKNAFLHDELKETVFMTQPPGFE 1051
Query: 1125 HDKK--LVCRLHKALYGLKQAPRAWFEKLTSALVQFGFVASKCDPSLFVLSKKPLVIYVL 1182
+ VC+L KA+Y LKQAPRAWF+K +S L+++GF+ S DPSLFV K V+++L
Sbjct: 1052 DPSRPDYVCKLKKAIYDLKQAPRAWFDKFSSYLLKYGFICSFSDPSLFVYLKGRDVMFLL 1111
Score = 103 bits (257), Expect = 3e-20
Identities = 71/281 (25%), Positives = 128/281 (45%), Gaps = 26/281 (9%)
Query: 70 VTERDRVAGTLNPAYSVWESKDQYLLSWLQSSLSTPVLSRMIGCAHSFQLWEKIHSFFHN 129
VT+ D + N + W DQ + +W+ SLS L +IG + ++W + F+
Sbjct: 55 VTKDDIQSEEANQEFLKWTRIDQLVKAWIFGSLSEEALKVVIGLNSAQEVWLGLARRFNR 114
Query: 130 QTRAKSTQLRTELRSETLGNRTISEFLLQIKSIIDSLFAIGDPISPREHLDVILQGLPSD 189
+ + L+ L + + +T+ +L ++K+I D L +IG P++ +E + +L GL +
Sbjct: 115 FSTTRKYDLQKRLGTCSKAGKTMDAYLSEVKNICDQLDSIGFPVTEQEKIFGVLNGLGKE 174
Query: 190 YEDLITLISTRFEEHSIDE-----LEALLLAKEARLGKYRTPSATGEISVNVALSNPQTP 244
YE + T+I EHS+D + ++ K T +A E++ ++A ++
Sbjct: 175 YESIATVI-----EHSLDVYPGPCFDDVVYKLTTFDDKLSTYTANSEVTPHLAFYTDKSY 229
Query: 245 SSSAVSTQSASHTTSQGESQDSDPMDSYDSSGHGRGSSRGRGARGRGRGRSSIQCQLCYK 304
SS ++ + G + SY S G G G G+ S CQ+C K
Sbjct: 230 SS------RGNNNSRGGRYGNFRGRGSYSSRGRGFHQQFGSGSNNGSGNGSKPTCQICRK 283
Query: 305 FGHDVWQCYHRFNPNFVPQKPP----------QNSPQNSQW 335
+GH ++CY RF N++P+ P QN + +W
Sbjct: 284 YGHSAFKCYTRFEENYLPEDLPNAFAAMRVSDQNQASSHEW 324
>emb|CAB79576.1| putative protein [Arabidopsis thaliana] gi|3269282|emb|CAA19715.1|
putative protein [Arabidopsis thaliana]
gi|7444417|pir||T05745 hypothetical protein M4I22.20 -
Arabidopsis thaliana
Length = 1318
Score = 504 bits (1297), Expect = e-141
Identities = 315/798 (39%), Positives = 428/798 (53%), Gaps = 111/798 (13%)
Query: 427 WYPDSGASHHVTSESQNVHQFTPFAGQDQLFVGNGQGLPISGIGSSTL--SSGLV-LNNL 483
W PDS A+ HVT+ +++ Q P+ G D + V +G LPI+ GS+ L SSG V L ++
Sbjct: 177 WLPDSAATAHVTNSPRSLQQSQPYHGTDAIMVDDGNYLPITHTGSTNLASSSGTVPLTDV 236
Query: 484 LHVPSITKNLVSVSKFARDNGVFFEFHPYYCCVKSQASSKVLLQGSVGADGLYKFHEFKL 543
L PSITK+L+S+SK +D EF V +A+ K+LL GS DGLY + K
Sbjct: 237 LVCPSITKSLLSMSKLTQDFPCTVEFEYDGVRVNDKATKKLLLMGS-NRDGLYCLKDDK- 294
Query: 544 SHLPVSLSAPVQHPVSVHTSVSSSGHAPVEQPSVVSSVCTANLWHFRLGHPSLNVLRKAL 603
Q T S+ +WH RLGHP +L+
Sbjct: 295 -----------QFQAFFSTRQRSASD---------------EVWHRRLGHPHPQILQ--- 325
Query: 604 QFCKIPVSNKMDVDFCKACVMGKSHRLPSSLSTTEYTSPLELVYSDLWGPSPSPSSSGYL 663
PLE V+ DLWGP+ S G+
Sbjct: 326 --------------------------------------PLERVHCDLWGPTTITSVQGFR 347
Query: 664 YYITFIDAYSRYTWIYLLKAKSEAISAFHQFKASSELQLNAKIKALQTDWGGEF--RVFP 721
YY FID YSR++WIY LK KS+ + F F E QL+ KI Q D GGEF F
Sbjct: 348 YYAVFIDHYSRFSWIYPLKLKSDFYNIFLAFHKLVENQLSQKISVFQCDGGGEFVSHKFL 407
Query: 722 NFLKDFGIHHRLICPHTHHQNGVVERKHRHIVDLGLSLLAHASIPLTYWDFAFSTAVYLI 781
L+ GI +L CPHT QNG+ ERKHRH+V+LGLS+L + +P +W AF TA +LI
Sbjct: 408 QHLQSHGIQQQLSCPHTPQQNGLAERKHRHLVELGLSMLFQSHVPHKFWVEAFFTANFLI 467
Query: 782 NRLPTSSLQFDI-PLYKLFKQIPDYTFLKVFGCTCFPLMRPYNSHKLDFRSQECVFLGYS 840
N LPTS+L+ I P KL+ + PDYT L+ FG CFP +R Y +K + S +CVFLGY+
Sbjct: 468 NLLPTSALKESISPYEKLYDKKPDYTSLRSFGSACFPTLRDYAENKFNPCSLKCVFLGYN 527
Query: 841 PSHRGYKCL-ASSGRIYISKDVIFDEHTFPYPKLFAQ---NSNSPSLSPAVVLPSLPSVE 896
++GY+CL +GR+YIS+ VIFDE +P+ + +P L+ + P+
Sbjct: 528 EKYKGYRCLYPPTGRLYISRHVIFDESVYPFSHTYKHLHPQPRTPLLAAWLRSSDSPAPS 587
Query: 897 HFSQPAIAQP---SSSLP------SPFLPS--PIASSDQNPSSTSPASAPATSEASAEIP 945
+ P+ P S+ P +P LP+ PI+S + T+ S SE + +
Sbjct: 588 TSTSPSSRSPLFTSADFPPLPQRKTPLLPTLVPISSVSHASNITTQQSPDFDSERTTDFD 647
Query: 946 S----------------QVTIPTSSGQVSAPSSSGNVHPMITRSKNGIVQPRVQPTLLTV 989
S + TI +S V +S NVHPM+TR+K GI +P + L+
Sbjct: 648 SASIGDSSHSSQAGSDSEETIQQASVNVHQTHASTNVHPMVTRAKVGISKPNPRYVFLSH 707
Query: 990 QL---EPTTVKQALAHPQWLQAMQAEFDALQKNKTWSLVPLPPGREAIGCKWVFRVKHNP 1046
++ EP TV AL HP W AM E + +TWSLVP +G KWVFR K +
Sbjct: 708 KVSYPEPKTVTAALKHPGWTGAMTEEIGNCSETQTWSLVPYKSDMHVLGSKWVFRTKLHA 767
Query: 1047 DGTLNKYKARLVAKGFHQQPGFDYTETFSPVIKPVTIRVILTLALTNHWTIQQLDVNNAF 1106
DGTLNK KAR+VAKGF Q+ G DY ET+SPV++ T+R++L LA +W I+Q+DV NAF
Sbjct: 768 DGTLNKLKARIVAKGFLQEEGIDYLETYSPVVRTPTVRLVLHLATALNWDIKQMDVKNAF 827
Query: 1107 LNGDLAEEVYMQQPQGFEHDKK--LVCRLHKALYGLKQAPRAWFEKLTSALVQFGFVASK 1164
L+GDL E VYM QP GF K VC LHK++YGLKQ+PRAWF+K ++ L++FGF SK
Sbjct: 828 LHGDLKETVYMTQPAGFVDPSKPDHVCLLHKSIYGLKQSPRAWFDKFSTFLLEFGFFCSK 887
Query: 1165 CDPSLFVLSKKPLVIYVL 1182
DPSLF+ + +I +L
Sbjct: 888 SDPSLFIYAHNNNLILLL 905
Score = 39.3 bits (90), Expect = 0.80
Identities = 19/77 (24%), Positives = 41/77 (52%)
Query: 137 QLRTELRSETLGNRTISEFLLQIKSIIDSLFAIGDPISPREHLDVILQGLPSDYEDLITL 196
+L+ L++ + ++T+ +L +K+I D L ++G P++ + + L GL +YE + T
Sbjct: 49 ELQRRLQNVSKRDKTMDAYLNDLKNICDQLASVGSPVTEKMKIFAALNGLGREYEPIKTT 108
Query: 197 ISTRFEEHSIDELEALL 213
I + LE ++
Sbjct: 109 IENSMDTQPGPSLENVI 125
>gb|AAP53905.1| putative pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37534632|ref|NP_921618.1| putative pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1688
Score = 477 bits (1227), Expect = e-132
Identities = 307/799 (38%), Positives = 419/799 (52%), Gaps = 76/799 (9%)
Query: 414 STSTPQATSPAQSWYPDSGASHHVTSESQNVHQFTPFAGQDQLFVGNGQGLPISGIGSST 473
ST TP A+ P W DSGAS H++ + + + NG ++ GS +
Sbjct: 174 STVTPIASQP---WILDSGASFHMSFDDSWLTSCRLVKNGATVHTANGTLCKVTHQGSIS 230
Query: 474 LSSGLVLNNLLHVPSITKNLVSVSKFARDNGVFFEFHPYYCCVKSQASSKVLLQGSVGAD 533
S + N+ VP ++ NL+SV + D F F C V+ + + V+ G
Sbjct: 231 -SPQFTVPNVSLVPKLSMNLISVGQLT-DTNCFVGFDDTSCFVQDRHTGAVIGTG----- 283
Query: 534 GLYKFHEFKLS---HLPVSLSAPVQHPVSVHTSVSSSGHAPVEQPSVVSSVCTA-NLWHF 589
H K S ++ SLS P SSS + P + S+ C + WH
Sbjct: 284 -----HRQKRSCGLYILDSLSLP-----------SSSTNTPSVYSPMCSTACKSFPQWHH 327
Query: 590 RLGH---PSLNVLRKALQFCKIPVSNKMDVDFCKACVMGKSHRLPSSLSTTEYTSPLELV 646
RLGH L L +PV CK C +GK +LP ST+ + P +LV
Sbjct: 328 RLGHLCGSRLATLINQGVLGSVPVDTTF---VCKGCKLGKQVQLPYPSSTSRSSRPFDLV 384
Query: 647 YSDLWGPSPSPSSSGYLYYITFIDAYSRYTWIYLLKAKSEAISAFHQFKASSELQLNAKI 706
+SD+WG SP PS G+ YY+ F+D YSRYTWIY +K +S+ IS + F Q ++ I
Sbjct: 385 HSDVWGKSPFPSKGGHNYYVIFVDDYSRYTWIYFMKHRSQLISIYQSFAQMIHTQFSSAI 444
Query: 707 KALQTDWGGEF--RVFPNFLKDFGIHHRLICPHTHHQNGVVERKHRHIVDLGLSLLAHAS 764
+ ++D GGE+ F FL G +L CP H QNGV ERKHRHI++ +LL +
Sbjct: 445 RIFRSDSGGEYMSNAFREFLVSQGTLPQLSCPGAHAQNGVAERKHRHIIETARTLLIASF 504
Query: 765 IPLTYWDFAFSTAVYLINRLPTSSLQFDIPLYKLFKQIPDYTFLKVFGCTCFPLMRPYNS 824
+P +W A STAVYLIN P+SSLQ P LF P Y L+VFGCTC+ L+ P
Sbjct: 505 VPAHFWAEAISTAVYLINMQPSSSLQGRSPGEVLFGSPPRYDHLRVFGCTCYVLLAPRER 564
Query: 825 HKLDFRSQECVFLGYSPSHRGYKCL-ASSGRIYISKDVIFDEHTFPYPKLFAQNSNSPSL 883
KL +S ECVFLGYS H+GY+C S+ RI IS+DV FDE+ F ++N PS
Sbjct: 565 TKLTAQSVECVFLGYSLEHKGYRCYDPSARRIRISRDVTFDENK----PFFYSSTNQPS- 619
Query: 884 SPA-----VVLPSLPSVEHF-SQPAIAQPSS---SLPSP-FLPSPIASSDQNPSSTSPAS 933
SP + LP +PS E S P PS S+PSP ++P P S +P S P+
Sbjct: 620 SPENSISFLYLPPIPSPESLPSSPITPSPSPIPPSVPSPTYVPPPPPSPSPSPVSPPPSH 679
Query: 934 APATSEASAEIPSQVTIPTS----SGQVSAPSSSGNVHPMIT-----------------R 972
PA+S + +PS +T+ T S + P+ S P + R
Sbjct: 680 IPASS-SPPHVPSTITLDTFPFHYSRRPKIPNESQPSQPTLEDPTCSVDDSSPAPRYNLR 738
Query: 973 SKNGIVQPRVQPTLLTVQLEPTTVKQALAHPQWLQAMQAEFDALQKNKTWSLVPLPPGRE 1032
+++ + P ++ V EP+T ++A+ P W AM E AL++ TW +VPLP
Sbjct: 739 ARDALRAPNRDDFVVGVVFEPSTYQEAIVLPHWKLAMSEELAALERTNTWDVVPLPSHAV 798
Query: 1033 AIGCKWVFRVKHNPDGTLNKYKARLVAKGFHQQPGFDYTETFSPVIKPVTIRVILTLALT 1092
I CKWV++VK DG + +YKARLVA+GF Q G DY ETF+PV T+R ++ +A T
Sbjct: 799 PITCKWVYKVKTKSDGQVERYKARLVARGFQQAHGRDYDETFAPVAHMTTVRTLIAVAAT 858
Query: 1093 NHWTIQQLDVNNAFLNGDLAEEVYMQQPQGFEHDKKLVCRLHKALYGLKQAPRAWFEKLT 1152
WTI Q+DV NAFL+GDL EEVYM P G E V RL +ALYGLKQAPRAWF + +
Sbjct: 859 RSWTISQMDVKNAFLHGDLHEEVYMHPPPGVEAPPGHVFRLRRALYGLKQAPRAWFARFS 918
Query: 1153 SALVQFGFVASKCDPSLFV 1171
S ++ GF S DP+LF+
Sbjct: 919 SVVLAAGFSPSDHDPALFI 937
>gb|AAT39281.1| putative late blight resistance protein [Solanum demissum]
Length = 1630
Score = 466 bits (1198), Expect = e-129
Identities = 300/827 (36%), Positives = 420/827 (50%), Gaps = 138/827 (16%)
Query: 420 ATSPAQS--WYPDSGASHHVTSESQNVHQFTPFAGQDQLFVGNGQGLPISGIGSSTLSSG 477
A SP Q W D+GA+HH+ S +QN + G +++ +G+G +PIS G++ LS+
Sbjct: 277 ARSPTQQAPWIVDTGATHHMASNAQNFTDVHTYHGPEEIAMGDGNTIPISHTGNTNLSAS 336
Query: 478 ---LVLNNLLHVPSITKNLVSVSKFARDNGVFFEFHPYYCCVKSQASSKVLLQGSVGADG 534
L N L SI NL+SVSKF RDN EF P+ CVK ++ L +G DG
Sbjct: 337 NQQFKLLNTLCSHSIKNNLLSVSKFCRDNHTSIEFFPFSYCVKDLSTGAPLFRGQ-NRDG 395
Query: 535 LYKFHEFKLSHLPVSLSAPVQHPVSVHTSVSSSGHAPVEQPSVVSSVCTANLWHFRLGHP 594
LY++ + S+ H P Q +VV + +LWH RLGHP
Sbjct: 396 LYEW------------------------PLGSAHHTP--QCNVVVPL---HLWHRRLGHP 426
Query: 595 SLNVLRKALQFCKIPVSNKMDVDFCKACVMGKSHRLPSSLSTTEYTSPLELVYSDLWGPS 654
+ L +PVS+ C +C K HRLP S ++ + PL+++Y+DLWGPS
Sbjct: 427 NHRTLNMIFHQFSLPVSHSRTASICNSCYSNKMHRLPFSENSLQSQRPLQIIYTDLWGPS 486
Query: 655 PSPSSSGYLYYITFIDAYSRYTWIYLLKAKSEAISAFHQFKASSELQLNAKIKALQTDWG 714
P S YY F+D YS+Y ++ +K+K E + F E + KI +L TD G
Sbjct: 487 PVLSIDNKRYYALFVDQYSKYMCLFTIKSKKEVLDVFQALHPLLERRFQTKIMSLYTDGG 546
Query: 715 GEFRVFPNFLKDFGIHHRLICPHTHHQNGVVERKHRHIVDLGLSLLAHASIPLTYWDFAF 774
GEF+ ++LK GI H + P+T + VER+H+H+V+ +LL AS+P ++W FA
Sbjct: 547 GEFQGLSSYLKIQGIEHLVTPPYTPQRVASVERRHKHVVETAKTLLHQASLPSSFWSFAC 606
Query: 775 STAVYLINRLPTSSLQFDIPLYKLFKQIPDYTFLKVFGCTCFPLMRPYNSHKLDFRSQEC 834
AVYLINRL T +LQ P LF + P Y L+VFGC C+P ++PY +KL+ +S C
Sbjct: 607 HQAVYLINRLTTPNLQNKCPYEILFHEAPKYESLRVFGCLCYPWLKPYAKNKLEPKSTPC 666
Query: 835 VFLGYSPSHRGYKCLAS-SGRIYISKDVIFDEHTFPYPKLFAQNSNSPSLS--------- 884
V+LG+S H ++C ++Y+S+DV F E T+P+ +F N S
Sbjct: 667 VYLGFSTKHYCHQCFDPVKNKLYLSRDVQFLEDTYPFHNIFLNLKNQQSTDSWEICYDVL 726
Query: 885 PAVVLPS-----------LP--SVEHFSQPAIAQP-------SSSLPSPFLPSPIA---- 920
P PS LP S+ S PA ++ S +L SP LP I
Sbjct: 727 PVTNKPSSFDSCHTLPDALPVYSLLPNSMPARSEGVSIASGNSQTLSSPSLPHTITPPPD 786
Query: 921 ------------SSDQNPSSTS---PASAPAT---SEASAEIPSQVTIPTSSGQVSAPSS 962
+ Q PS++ P+ P T S++SA SQ T+ + S P
Sbjct: 787 YTQPQPLITYQRKNHQQPSTSVLPLPSPIPPTNLPSQSSANNSSQPTLALAPSDPS-PVV 845
Query: 963 SGNVHPMITRSKNGIVQPRVQPTLLTVQLE----PTTVKQALAHPQWLQAMQAEFDALQK 1018
+ + HPM+TRSK +QP+ + VQL P T KQA HP W +AM AEFDAL +
Sbjct: 846 TTSSHPMVTRSKTNSLQPK--QFSVNVQLSSSFVPHTYKQACPHPHWREAMHAEFDALVR 903
Query: 1019 NKTWSLVPLPPGREAIGCKWVFRVKHNPDGTLNKYKARLVAKGFHQQPGFDYTETFSPVI 1078
N TW LVP+ + PV+
Sbjct: 904 NWTWDLVPVTHSMNVV----------------------------------------DPVV 923
Query: 1079 KPVTIRVILTLALTNHWTIQQLDVNNAFLNGDLAEEVYMQQPQGFEHDKKL---VCRLHK 1135
KP+TIR++LT+ +W I Q+DVNNAFL G L EEVYM+QP GFE D+ L VC+L+K
Sbjct: 924 KPITIRLVLTIVTQYNWPIHQIDVNNAFLQGSLEEEVYMRQPPGFE-DQSLSTHVCKLNK 982
Query: 1136 ALYGLKQAPRAWFEKLTSALVQFGFVASKCDPSLFVLSKKPLVIYVL 1182
+YGLKQAPRAW+ +L S L+ GFV S+ D SLF+L +YVL
Sbjct: 983 VIYGLKQAPRAWYNELKSYLLTVGFVKSQSDSSLFILHNFGFTVYVL 1029
Score = 60.5 bits (145), Expect = 3e-07
Identities = 71/316 (22%), Positives = 122/316 (38%), Gaps = 58/316 (18%)
Query: 40 FLLWKQQVEPIIKAHNL--HVLVQDPEIPPRFVTERDRVAGTLNPAYSVWESKDQYLLSW 97
F LWK QV +++ HNL H+ P P R V + ++ NPA+ W +DQ + +
Sbjct: 35 FSLWKAQVSMLMRGHNLFGHLNGSRPA-PARTVAQNNQ--DIENPAFVSWYRQDQLIQNA 91
Query: 98 LQSSLSTPVLSRMIGCAHSFQLWEKIHSFFHNQTRAKSTQLRTELRSETLGNRTISEFLL 157
+ +S+ +++ ++ + S W+ +H+ + AK +Q R
Sbjct: 92 ILASVDPNLIATVVAASISQAAWDALHTAY-----AKKSQTR------------------ 128
Query: 158 QIKSIIDSLFAIGDPISPREHLDVILQGLPSDYEDLITLISTRFEEHSIDELEALLLAKE 217
I P+S E + IL GL + ++ I R S EL LL E
Sbjct: 129 -----------IFTPMSNEELIVKILTGLGPKFREISAAIRARDSAISYPELYEKLLDHE 177
Query: 218 ARLGKYRTPSATGEISVNVALSNPQTPSSSAVSTQSASHTTSQGESQDSDPMDSYDSSGH 277
I A TP ++A++ Q H S +S +++
Sbjct: 178 L------------FIKHEEAKKPLLTPITAAIAQQINMHPRQGNTSNRRSNANSPNTNQS 225
Query: 278 GRGS-SRGRGARGRGRGRSSIQCQLCYKFGHDVWQC------YHRFNPNFVPQKPPQNSP 330
R SR + R +++CQLC + GH C + + N+ + P Q +P
Sbjct: 226 RRAQPSRAGNNNQQQRYDHTLKCQLCDRLGHSAKVCRSQSHDHIQARANYAARSPTQQAP 285
Query: 331 QNSQWNSSPQWHSNSQ 346
++ SN+Q
Sbjct: 286 WIVDTGATHHMASNAQ 301
>gb|AAU89779.1| gag-pol polyprotein-like [Solanum tuberosum]
Length = 1212
Score = 459 bits (1180), Expect = e-127
Identities = 335/1174 (28%), Positives = 517/1174 (43%), Gaps = 206/1174 (17%)
Query: 30 TISEKLSDRNFLLWKQQVEPIIKAHNLHVLVQDPEIPPRFVTERDRVAGTLNPAYSVWES 89
+ S + + +N+ W+ Q + + L + + P T+ W+
Sbjct: 8 SFSVRFTGKNYSSWEFQFQLFVTGKELWGYIDGSDPAPTDATKLGE-----------WKI 56
Query: 90 KDQYLLSWLQSSLSTPVLSRMIGCAHSFQLWEKIHSFFHNQTRAKSTQLRTELRSETLGN 149
KD +++W+ S+ ++ + +W+ + ++ A+ QL E+ + + G
Sbjct: 57 KDARVMTWILGSIDPLIVLNLRPYKTVKAMWDYLQKVYNQDNSARRFQLEYEIANYSQGG 116
Query: 150 RTISEFLLQIKSIIDSLFAIGDPISPREHLDVI------------LQGLPSDYEDLITLI 197
+ ++ +++ I P E L VI L L SD+E + + +
Sbjct: 117 LFVQDYFSGFQNLWAEFTDIVYAKIPTESLSVIQAVHEQSKRDQFLMKLRSDFESIRSNL 176
Query: 198 STRFEEHSIDELEALLLAKEARLGKYRTPSATGEISVNVALSNPQTPSSSAVSTQSASHT 257
R S+D LL +E RL +++V A
Sbjct: 177 MNRDPSPSLDVCFRELLREEQRLVTQNVFKKENDVTVAFA-------------------- 216
Query: 258 TSQGESQDSDPMDSYDSSGHGRGSSRGRGARGRGRGRSSIQCQLCYKFGHDVWQCYHRFN 317
+QG +G+GR S QC C ++GH C +F
Sbjct: 217 -AQG--------------------------KGKGRDMSRTQCYSCKEYGHIASNCSKKFY 249
Query: 318 PNFVPQ-----KPPQNSPQNSQWNSSPQWHSNSQWSSTPQWNSQWSAPVSSPWQHSSSQW 372
N+ Q K PQN + N+ + A ++ +SS
Sbjct: 250 -NYCKQQGHIIKECPMRPQNRRINA-------------------FQARINGSTDDNSSL- 288
Query: 373 PPRYPPAPSGYAPMASSPGVPYRGPAPSPMGYAQAHVAFQTSTSTPQATSPAQSWYPDSG 432
G +P Q V+ ++ + W DSG
Sbjct: 289 -----------------------GQVLTPEMVQQMIVSAFSALGLQGNDVTSNFWIVDSG 325
Query: 433 ASHHVTSESQNVHQFTPFAGQDQLFVGNGQGLPISGIGSSTLSSGLVLNNLLHVPSITKN 492
AS+H+T+ + + + G Q+ + NG LPI+ +G T + N+ P ++ +
Sbjct: 326 ASNHMTNSTSILKNVRKYQGPSQIQIANGSNLPITKVGDITPT----FKNVFVSPKLSTS 381
Query: 493 LVSVSKFARDNGVFFEFHPYYCCVKSQASSKVLLQGSVGADGLYKFHEFKLSHL-PVSLS 551
L+SV + DN F C V+ Q S ++ +G K+ L P+ S
Sbjct: 382 LISVGQLV-DNNCDVNFSRNGCLVQDQVSGTIIAKGP------------KVGRLFPIHFS 428
Query: 552 APVQHPVSVHTSVSSSGHAPVEQPSVVSSVCTANLWHFRLGHPSLNVLRKALQFCKIPVS 611
P PV + S+ +WH RLGHP+ VL +
Sbjct: 429 IP-----------------PVLSFACTSTASKTEVWHKRLGHPNSVVLSHISNSGLLGNK 471
Query: 612 NKMDVDF--CKACVMGKSHRLPSSLSTTEYTSPLELVYSDLWGPSPSPSSSGYLYYITFI 669
NK V C C +GKS LP + T ++++SD+WG SP S + + Y++TFI
Sbjct: 472 NKFSVASIDCSTCKLGKSKTLPFPNFGSRATKCFDVIHSDVWGISPIISHAHFKYFMTFI 531
Query: 670 DAYSRYTWIYLLKAKSEAISAFHQFKASSELQLNAKIKALQTDWGGEFRV--FPNFLKDF 727
D YSR+TW+Y L++KSE S F F A E Q + IK L++D GGE+ F FL D
Sbjct: 532 DDYSRFTWVYFLRSKSEVFSMFKTFLAYIETQFSTCIKLLRSDSGGEYMSYEFKKFLLDK 591
Query: 728 GIHHRLICPHTHHQNGVVERKHRHIVDLGLSLLAHASIPLTYWDFAFSTAVYLINRLPTS 787
GI + CP+T QNGV ERK+RH++D+ +LL +S+P YW A STAVYLINRLP+
Sbjct: 592 GIVSQHSCPYTPQQNGVAERKNRHLLDVTRTLLIESSVPSKYWVEALSTAVYLINRLPSK 651
Query: 788 SLQFDIPLYKLFKQIPDYTFLKVFGCTCFPLMRPYNSHKLDFRSQECVFLGYSPSHRGYK 847
L + P ++L+ Q P+Y+ FGC CF + P +KL +S +C F+GYS S +G+
Sbjct: 652 VLNLESPYFRLYHQNPNYSDFHTFGCVCFVHLPPSQCNKLSVQSTKCAFMGYSTSQKGFI 711
Query: 848 CL-ASSGRIYISKDVIFDEHTFPYPKLFAQNSNSPSLSPAVVLPSLPSVEHFS------- 899
C S + IS++V+F E+ + +P + +S SP L L S S + F
Sbjct: 712 CYDPCSHKFRISRNVVFFENQYFFPTIVDLSSVSPLLPTFEDLSS--SFKRFKPGFVYER 769
Query: 900 -QPAIAQPSSSLPSPFLPSPIASSDQNPSSTSPASAPATSEASAEIPSQVTIPTSSGQVS 958
+P + P++ P P +N S + P S + P+ ++ +S
Sbjct: 770 RRPTLPYPNTDPPPETAPQ---LESENSSRSGPLEPTRRSTRVSRTPNWYGFSSTLSNIS 826
Query: 959 APSSSGNVHPMITRSKNGIVQPRVQPTLLTVQLEPTTVKQALAHPQWLQAMQAEFDALQK 1018
PS QA H W +AM+ E AL++
Sbjct: 827 VPSC---------------------------------YSQASKHECWQKAMEEELLALKE 853
Query: 1019 NKTWSLVPLPPGREAIGCKWVFRVKHNPDGTLNKYKARLVAKGFHQQPGFDYTETFSPVI 1078
N TW +V P IGCKWV+ +K + DGTL++YKARLV G Q+ G DY ETF+PV
Sbjct: 854 NDTWDIVSCPSNVRPIGCKWVYSIKLHSDGTLDRYKARLVVLGNRQEYGVDYEETFAPVA 913
Query: 1079 KPVTIRVILTLALTNHWTIQQLDVNNAFLNGDLAEEVYMQQPQG-FEHDKKLVCRLHKAL 1137
K T+R I+ +A + +W++ Q DV NAFL+GDL E++YM+ P F VC+L ++L
Sbjct: 914 KMTTVRTIIAIAASQNWSLYQKDVKNAFLHGDLKEDIYMKPPPDLFSSPTSDVCKLKRSL 973
Query: 1138 YGLKQAPRAWFEKLTSALVQFGFVASKCDPSLFV 1171
YGLKQAPRAWF+K S L+QF F SK D SLF+
Sbjct: 974 YGLKQAPRAWFDKFRSTLLQFSFELSKYDSSLFL 1007
>gb|AAG51258.1| Ty1/copia-element polyprotein [Arabidopsis thaliana]
gi|25403501|pir||H86486 protein Ty1/copia-element
polyprotein [imported] - Arabidopsis thaliana
Length = 1152
Score = 445 bits (1144), Expect = e-123
Identities = 339/1143 (29%), Positives = 526/1143 (45%), Gaps = 136/1143 (11%)
Query: 81 NPAYSVWESKDQYLLSWLQSSLSTPVLSRMIGCAHSFQLWEKIHSFFHNQTRAKSTQLRT 140
+P Y W + L+ WL +SL V + ++ +WE + + + ++ QL+
Sbjct: 78 SPDYPRWLQTNSMLVGWLYASLDPQVQKSISVVDNARVMWESLRTRYSVGNASRVHQLKY 137
Query: 141 ELRSETLGNRTISEFLLQIKSIIDSLFAIGDPISPREHLDVILQGLPSDYEDLITLISTR 200
++ + +T + + ++K + D L DYE L+T R
Sbjct: 138 DIVACRQDGQTAANYFGKLKVMWDDL---------------------DDYEPLLTCCCNR 176
Query: 201 ---------FEEHSIDELEALLLAKEA-RLGKYRTPSATGEISVNVALSNPQTPSSSAVS 250
+ + + L+ +A + G RT + G +S + +S S
Sbjct: 177 PSCTHRVRQSQRRDHERIHQFLMGLDAAKFGTSRT-NILGRLSRDDNISLDSIYSEIIAE 235
Query: 251 TQSASHTTSQGESQDSDPMDSYDSSGHGRGSSRGRGARGR-GRGRSSIQCQLCYKFGHDV 309
+ + T S+ E D+ G G A R + C C + H
Sbjct: 236 ERHLTITRSKEERVDAV----------GFAVQTGVNAIASVTRVNNMGPCTHCGRSNHSA 285
Query: 310 WQCYHRFN-PNFVPQKPPQNSPQNSQWNSS-PQWHSNSQWSSTPQWNSQWSAPVSSPWQH 367
C+ P + +K S + SS P+ +S N+Q S P SS +
Sbjct: 286 DTCFKLHGVPEWYTEKYGDTSSGRGRGRSSTPRGRGRGHGNSYKANNAQTSHPSSSASEF 345
Query: 368 SSSQWPPRYPPAPSGYAPMASSPGVPYRGPAPSPMGYAQAHVAFQTSTSTPQATSPAQ-- 425
S PGV + + + T+TS+ + +
Sbjct: 346 SDI-------------------PGV-----SKEAWSAIRNLLKQDTATSSEKLSGKTNCV 381
Query: 426 SWYPDSGASHHVTSESQNVHQFTPFAGQDQLFVGNGQGLPISGIGSSTLSSGLVLNNLLH 485
+ DSGASHH+T + + + + N + + G+ L + + L ++L
Sbjct: 382 DFLIDSGASHHMTGFLDLLTEIYEIP-HSVVVLPNAKHTIATKKGTLILGANMKLTHVLF 440
Query: 486 VPSITKNLVSVSKFARDNGVFFEFHPYYCCVKSQASSKVLLQGSVGADGLYKFHEFKLSH 545
VP ++ L+SV++ R+ F F C ++ + +SK+L+ ++G+Y H
Sbjct: 441 VPDLSCTLISVARLLRELHCFAIFTDKVCVIQDR-TSKMLIGVGTESNGVY--------H 491
Query: 546 LPVSLSAPVQHPVSVHTSVSSSGHAPVEQPSVVSSVCTANLWHFRLGHPSLNVLRKALQF 605
L Q V TS + VV LWH RLGHPS VL L
Sbjct: 492 L--------QRAEVVATSAN-----------VVKWKTNKALWHMRLGHPSSKVLSSVLPS 532
Query: 606 CKIPVSNKMDVD-FCKACVMGKSHRLPSSLSTTEYTSPLELVYSDLWGPSPSPSSSGYLY 664
+ S D+ C CV K R S S + ++ D+WGP SS G Y
Sbjct: 533 LEDFDSCSSDLKTICDVCVRAKQTRASFSESFNKAEECFSFIHYDVWGPYKHASSCGAHY 592
Query: 665 YITFIDAYSRYTWIYLLKAKSEAISAFHQFKASSELQLNAKIKALQTDWGGEFRVFPNFL 724
++T +D +SR WI+L+ AKSE S QF A + Q N ++K ++++ G EF ++
Sbjct: 593 FLTIVDDHSRAVWIHLMLAKSEVASLLQQFIAMASRQFNKQVKTVRSNNGTEFMSLKSYF 652
Query: 725 KDFGIHHRLICPHTHHQNGVVERKHRHIVDLGLSLLAHASIPLTYWDFAFSTAVYLINRL 784
+ GI H++ C +TH QNG VERKHRHI+++ SLL A +P+++W+ + TA YLINR
Sbjct: 653 AERGIVHQISCVYTHQQNGRVERKHRHILNVARSLLFQAELPISFWEESVLTAAYLINRT 712
Query: 785 PTSSLQFDIPLYKLFKQIPDYTFLKVFGCTCFPLMRPYNSHKLDFRSQECVFLGYSPSHR 844
PT L P L+ Q P Y L+VFG CF K R ++C+F+GY +
Sbjct: 713 PTPILDGKTPYKILYSQPPSYASLRVFGSLCFARKHTGRLDKFQERGRKCIFVGYPHGQK 772
Query: 845 GYKCLASSGRI-YISKDVIFDEHTFPYPKLFAQNSNSPSL-SPAVVLPS--LPSVEHFSQ 900
G++ +I ++S+DV+F E FP FA N + SPA V+PS LP + F
Sbjct: 773 GWRIYDIESQIFFVSRDVVFQEDIFP----FADKKNKDTFSSPAAVIPSPILPYDDEFLD 828
Query: 901 -------------PAIAQPSSSLPSPFLPSPIASSDQNPSSTSPASAPATSEASAEIPSQ 947
PAI + S PS SPI ++ P++ SP E
Sbjct: 829 IYQIGDVPATNPLPAIIDVNDSPPS----SPIITA--TPAAASPPPLRRGLRQRQENVRL 882
Query: 948 VTIPTSSGQVSAPSSSGN-----VHPMITRSKNGIVQPRVQPTLLTVQL--EPTTVKQAL 1000
T S Q + + + ++PM I P Q L + + P T QA+
Sbjct: 883 KDYQTYSAQCESTQTLSDNIGTCIYPMANYVSGEIFSPSNQHFLAAISMVDPPQTYNQAI 942
Query: 1001 AHPQWLQAMQAEFDALQKNKTWSLVPLPPGREAIGCKWVFRVKHNPDGTLNKYKARLVAK 1060
+W A+ E DAL+ TW + LP G +AIG KWVFR+K+N +GT+ +YKARLVA
Sbjct: 943 REKEWRNAVFFEVDALEDQGTWDITKLPQGVKAIGSKWVFRIKYNSNGTVERYKARLVAL 1002
Query: 1061 GFHQQPGFDYTETFSPVIKPVTIRVILTLALTNHWTIQQLDVNNAFLNGDLAEEVYMQQP 1120
G HQ+ G D+T+TF+PV+K T+R++L +A W + Q+DV+NAFL+GDL E++YM+ P
Sbjct: 1003 GNHQKEGIDFTKTFAPVVKMQTVRLLLDVAAAKDWELHQMDVHNAFLHGDLKEDIYMKPP 1062
Query: 1121 QGFE-HDKKLVCRLHKALYGLKQAPRAWFEKLTSALVQFGFVASKCDPSLFVLSKKPLVI 1179
GF+ D LVC+L K++YGLKQAPR WFEKL+++L++FGF SK D SLF + V+
Sbjct: 1063 PGFKTTDPSLVCKLKKSIYGLKQAPRCWFEKLSTSLLKFGFTQSKKDYSLFTSIRGSKVL 1122
Query: 1180 YVL 1182
+V+
Sbjct: 1123 HVI 1125
>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301694|pir||E84535 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1454
Score = 442 bits (1136), Expect = e-122
Identities = 342/1192 (28%), Positives = 548/1192 (45%), Gaps = 155/1192 (13%)
Query: 11 PPASPLPPHRFKLPSLSTYTISEKLSDRNFLLWKQQVEPIIKAHNLHVLVQDPEIPPRFV 70
P SP H P L+ IS +L + N+ W + + A N + P
Sbjct: 57 PTQSPFFLHSADHPGLNI--ISHRLDETNYGDWSVAMLISLDAKNKTGFIDGTLSRP--- 111
Query: 71 TERDRVAGTLNPAYSVWESKDQYLLSWLQSSLSTPVLSRMIGCAHSFQLWEKIHSFFHNQ 130
+ LN + +W + + SWL +S+S + ++ + +W ++S F+
Sbjct: 112 -----LESDLN--FRLWSRCNSMVKSWLLNSVSPQIYRSILRMNDASDIWRDLNSRFNVT 164
Query: 131 TRAKSTQLRTELRSETLGNRTISEFLLQIKSI---IDSLFAIGDPISPREHLDVILQGLP 187
++ L E++ G ++SE+ ++K++ +DS A+ +P + + + + +
Sbjct: 165 NLPRTYNLTQEIQDFRQGTLSLSEYYTRLKTLWDQLDSTEALDEPCTCGKAMRLQQK--- 221
Query: 188 SDYEDLITLISTRFEEHSIDELEALLLAKEARLGKYRTPSATGEISVNVALSNPQTPSSS 247
++ ++ ++ E ++I + ++AK+A PS GE+ + N Q S+
Sbjct: 222 AEQAKIVKFLAGLNESYAI--VRRQIIAKKA------LPSL-GEVYHILDQDNSQQSFSN 272
Query: 248 AVSTQSASHTTSQGESQDSDPMDSYDSSGHGRGSSRGRGARGRGRGRSSIQCQLCYKFGH 307
V+ +A + +S DP Y +G +G C + GH
Sbjct: 273 VVAPPAAFQVSEITQSPSMDPTVCYVQNGPNKGRPI---------------CSFYNRVGH 317
Query: 308 DVWQCY--HRFNPNFVP--------QKPPQ---NSPQNSQWNSSPQWHSNSQWSSTPQWN 354
+CY H F P F P QKP N ++S+ N+S + + + + +
Sbjct: 318 IAERCYKKHGFPPGFTPKGKAGEKLQKPKPLAANVAESSEVNTSLE---SMVGNLSKEQL 374
Query: 355 SQWSAPVSSPWQHSSSQWPPRYPPAPSGYAPMASSPGVPYRGPAPSPMGYAQAHVAFQTS 414
Q+ A SS Q++ PS YA ++S G SP Y+ F
Sbjct: 375 QQFIAMFSSQLQNTP----------PSTYATASTSQS-DNLGICFSPSTYS-----FIGI 418
Query: 415 TSTPQATSPAQSWYPDSGASHHVTSESQNVHQFTPFAGQDQLFVGNGQGLPISGIGSSTL 474
+ + T + +W DSGA+HHV S +++ + + + G + ISG+G+ L
Sbjct: 419 LTVARHTLSSATWVIDSGATHHV-SHDRSLFSSLDTSVLSAVNLPTGPTVKISGVGTLKL 477
Query: 475 SSGLVLNNLLHVPSITKNLVSVSKFARDNGVFFEFHPYYCCVKSQASSKVLLQGSVGADG 534
+ ++L N+L +P NL+S+S D G F C ++ ++L QG A+
Sbjct: 478 NDDILLKNVLFIPEFRLNLISISSLTDDIGSRVIFDKNSCEIQDLIKGRMLGQGRRVAN- 536
Query: 535 LYKFHEFKLSHLPVSLSAPVQHPVSVHTSVSSSGHAPVEQPSVVSSVCTANLWHFRLGHP 594
L L V +Q V++V ++WH RLGH
Sbjct: 537 --------LYLLDVG-----------------------DQSISVNAVVDISMWHRRLGHA 565
Query: 595 SLNVLRKALQFCKIPVSNKMDVDFCKACVMGKSHRLPSSLSTTEYTSPLELVYSDLWGPS 654
SL L DFC C + K +L S +L++ D+WGP
Sbjct: 566 SLQRLDAISDSLGTTRHKNKGSDFCHVCHLAKQRKLSFPTSNKVCKEIFDLLHIDVWGPF 625
Query: 655 PSPSSSGYLYYITFIDAYSRYTWIYLLKAKSEAISAFHQFKASSELQLNAKIKALQTDWG 714
+ GY Y++T +D +SR TW+YLLK KSE ++ F F E Q K+KA+++D
Sbjct: 626 SVETVEGYKYFLTIVDDHSRATWMYLLKTKSEVLTVFPAFIQQVENQYKVKVKAVRSDNA 685
Query: 715 GEFRVFPNFLKDFGIHHRLICPHTHHQNGVVERKHRHIVDLGLSLLAHASIPLTYWDFAF 774
E + F +F + GI CP T QN VVERKH+HI+++ +L+ + +PL+ W
Sbjct: 686 PELK-FTSFYAEKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSQVPLSLWGDCV 744
Query: 775 STAVYLINRLPTSSLQFDIPLYKLFKQIPDYTFLKVFGCTCFPLMRPYNSHKLDFRSQEC 834
TAV+LINR P+ L P L P Y L+ FGC C+ P HK RS+ C
Sbjct: 745 LTAVFLINRTPSQLLMNKTPYEILTGTAPVYEQLRTFGCLCYSSTSPKQRHKFQPRSRAC 804
Query: 835 VFLGYSPSHRGYKCL-ASSGRIYISKDVIFDEHTFPYPKLFAQNSNSPSLSPAVVLPSLP 893
+FLGY ++GYK + S ++IS++V F E FP A+N S S S + P +P
Sbjct: 805 LFLGYPSGYKGYKLMDLESNTVFISRNVQFHEEVFP----LAKNPGSES-SLKLFTPMVP 859
Query: 894 SVEHFSQPAIAQPSSSLPSPFLPSPIASSDQNPSSTSPASAPA--------TSEASAEIP 945
PSS LPS I+ SS PA T ++ + P
Sbjct: 860 VSSGIISDTTHSPSS------LPSQISDLPPQISSQRVRKPPAHLNDYHCNTMQSDHKYP 913
Query: 946 SQVTIPTSSGQVSAPSSSGNVHPMITRSKNGIVQPRVQPTLLTVQLEPTTVKQALAHPQW 1005
+S+ S + P N I + + PT +A +W
Sbjct: 914 -----------ISSTISYSKISPSHMCYINNITKIPI----------PTNYAEAQDTKEW 952
Query: 1006 LQAMQAEFDALQKNKTWSLVPLPPGREAIGCKWVFRVKHNPDGTLNKYKARLVAKGFHQQ 1065
+A+ AE A++K TW + LP G++A+GCKWVF +K DG L +YKARLVAKG+ Q+
Sbjct: 953 CEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGNLERYKARLVAKGYTQK 1012
Query: 1066 PGFDYTETFSPVIKPVTIRVILTLALTNHWTIQQLDVNNAFLNGDLAEEVYMQQPQGFEH 1125
G DYT+TFSPV K TI+++L ++ + W ++QLDV+NAFLNG+L EE++M+ P+G+
Sbjct: 1013 EGLDYTDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFLNGELEEEIFMKIPEGYAE 1072
Query: 1126 DK------KLVCRLHKALYGLKQAPRAWFEKLTSALVQFGFVASKCDPSLFV 1171
K +V RL +++YGLKQA R WF+K +S+L+ GF + D +LF+
Sbjct: 1073 RKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKTHGDHTLFL 1124
>gb|AAT38747.1| putative polyprotein [Solanum demissum]
Length = 1336
Score = 436 bits (1120), Expect = e-120
Identities = 353/1194 (29%), Positives = 554/1194 (45%), Gaps = 163/1194 (13%)
Query: 23 LPSLSTYTISEKLSDRNFLLWKQQVEPIIKA-HNLHVLVQDPEIPPRFVTERDRVAGTLN 81
+P+LS T S KL+ N+L W +++ +++ L+QDP +
Sbjct: 12 VPALSKITDS-KLNGSNYLDWSRKIRIYLRSVEKDDHLIQDPPT---------------D 55
Query: 82 PAYSVWESKDQYLLSWLQSSLSTPVLSRMIGCAHSFQLW---EKIHSFFHNQTRAKSTQL 138
A W D L+ + +S+ V+ + C +L E ++S N +R
Sbjct: 56 DAKKAWLRDDARLILQIINSIDNEVVGLVNHCEFVKELMDYLEYLYSGKGNLSRIYEVS- 114
Query: 139 RTELRSETLGNRTISEFLLQIKSIIDSL-----FAIGDPI--SPREHLDVI--LQGLPSD 189
+ RSE ++++ + ++ K + L F+ + + RE + ++ L GLPS+
Sbjct: 115 KAFYRSEKEA-KSLTTYFMEFKKTYEELNVLLPFSTDIKVQQAQREQMAIMSFLAGLPSE 173
Query: 190 YEDLITLISTRFEEHSIDELEALLLAKEARLGKYRTPS--ATGEISVNVA----LSNPQT 243
+E + I + E S+ ++ + +L E+ +T A G N A +N
Sbjct: 174 FETAKSQILSSSEITSLKDVFSQVLRTESTPANQQTNVLVAKGGGGRNNAGRWNNNNDAG 233
Query: 244 PSSSAVSTQSASHTTSQGESQDSDPMDSYDSSGH-GRGSSRGRGARGRGRGRSSIQCQLC 302
++ + +H G+ ++ +++ + G ++ G GR + C+ C
Sbjct: 234 KWNNNKDGEKWNHNNDAGKWNHNNDAGRWNNKNNVGVWNNNKEGNNDAGRWNNDNTCRYC 293
Query: 303 YKFGHDVWQCYHRFNPNFVPQKPPQNSPQNSQWNSSPQWHSNSQWSSTPQWNSQWSAPVS 362
+ GH C K Q Q +Q +A V+
Sbjct: 294 KEPGHIRRNC-----------KKLQLHNQQTQ-----------------------TAAVA 319
Query: 363 SPWQHSSSQWPPRYPPAPSGYAPMASSPGVPYRGPAPSPMGYAQAHVAFQTSTSTPQATS 422
+ +S P + YA + Y+ P+P + +S+S
Sbjct: 320 A-----TSSSPSTVTISADEYARLTK-----YQESMPAPSLNESGNKCLISSSS------ 363
Query: 423 PAQSWYPDSGASHHVTSESQNVHQFTPFAGQDQLFVGNGQGLPISGIGSSTLSSGLVLNN 482
+W DSGA+ H+T + +F + + +G I G G+ +S + L++
Sbjct: 364 ---NWIIDSGATDHMTGNPKFFSKFQAHKVPSSVTIVDGSSYTIEGSGTVNHTSSITLSS 420
Query: 483 LLHVPSITKNLVSVSKFARDNGVFFEFHPYYCCVKSQASSKVLLQGSVGADGLYKFHEFK 542
+L +PS NL+SVSK ++ F +P +C + + +++ + V +DGLY E+
Sbjct: 421 VLGLPSHAFNLISVSKLTKELKCFVSLYPDHCLFQDLMTKQIIGKRHV-SDGLYILDEWT 479
Query: 543 LSHLPVSLSAPVQHPVSVHTSVSSSGHAPVEQPSVVSSVCTANLWHFRLGHPSLNVLRKA 602
P SV SS+ + H RLGHPSL VL+K
Sbjct: 480 --------------PPSV----------------ACSSIVSPFEAHCRLGHPSLPVLKKL 509
Query: 603 L-QFCKIPVSNKMDVDFCKACVMGKSHRLPSSLSTTEYTS-PLELVYSDLWGPSPSPSSS 660
QF +P +D C++C K HR+ S + + ELV+SD+WGP P S
Sbjct: 510 CPQFHNVP-----SID-CESCHFAKHHRISLSPRNNKRANFAFELVHSDVWGPCPVVSKV 563
Query: 661 GYLYYITFIDAYSRYTWIYLLKAKSEAISAFHQFKASSELQLNAKIKALQTDWGGEF--R 718
G+ Y++TF+D +SR TWIY +K +SE S F F A + Q NA + L++D EF
Sbjct: 564 GFRYFVTFMDDFSRMTWIYFMKNRSEVFSHFSNFCAEIKTQFNASVHILRSDNAREFMSA 623
Query: 719 VFPNFLKDFGIHHRLICPHTHHQNGVVERKHRHIVDLGLSLLAHASIPLTYWDFAFSTAV 778
F N++ +GI H+ C T QNGV ERK+RH+++ LL +P +W STA
Sbjct: 624 SFQNYMNQYGILHQSSCVDTPSQNGVAERKNRHLLETARVLLFQMKVPKQFWADTVSTAS 683
Query: 779 YLINRLPTSSLQFDIPLYKLFKQIPDYTF-LKVFGCTCFPL-MRPYNSHKLDFRSQECVF 836
+LINR+P++ L DIP LF P + KVFG TC+ +RP+ + KLD ++ +CVF
Sbjct: 684 FLINRMPSTVLNGDIPYGVLFPNKPLFPLEPKVFGSTCYVRDVRPHIT-KLDPKALKCVF 742
Query: 837 LGYSPSHRGYKCLASS-GRIYISKDVIFDEHT--FPYPKLFAQNSNSPSLSPAVVLPSLP 893
LGYS +GY+C + + R +S DV+F E F P F + +
Sbjct: 743 LGYSRLQKGYRCYSPTLNRYMVSIDVVFSESISFFSSPDTFPTQGQQEDEEWLIYRTT-- 800
Query: 894 SVEHFSQPAIAQPSSSLPSPFLPSPIASSDQNPSSTSPASAPATSEASAEIPSQVTIPTS 953
PS S +P + S +N SS +P + QVT T
Sbjct: 801 ------------PSRSEQHKEVPGSVEQSMENVSSDAPLAQTKPPIVQVYSRRQVTNDTC 848
Query: 954 SGQVSAPSSSGNVHPMITRSKNGIVQPRVQPTLLTVQLEPTTVKQALAHPQWLQAMQAEF 1013
+ S V+P T + + + R + P TV++AL HP W AM E
Sbjct: 849 PAPTLSSSDPLPVNPSPTENLDIPIALRKDSIFV-----PKTVREALNHPGWYDAMLDEI 903
Query: 1014 DALQKNKTWSLVPLPPGREAIGCKWVFRVKHNPDGTLNKYKARLVAKGFHQQPGFDYTET 1073
AL N TW+LV LP G++A+GCKWVF +K NPDG++ + KARLVAKG+ Q G DY++T
Sbjct: 904 HALDDNHTWNLVDLPKGKKAVGCKWVFTIKVNPDGSMARLKARLVAKGYAQTYGVDYSDT 963
Query: 1074 FSPVIKPVTIRVILTLALTNHWTIQQLDVNNAFLNGDLAEEVYMQQPQGF--EHDKKLVC 1131
FSPV K ++R+ ++LA + +W + QL + NAFL+GDL EEVYM+QP GF + + VC
Sbjct: 964 FSPVAKLTSVRLFISLAASQNWPLHQLAIKNAFLHGDLQEEVYMEQPPGFVAQGENGKVC 1023
Query: 1132 RLHKALYGLKQAPRAWFEKLTSALVQFGFVASKCDPSLFVLSKKP----LVIYV 1181
L K LYGLKQ+PRAWF K + + +FG S CD S+F LV+YV
Sbjct: 1024 HLKKPLYGLKQSPRAWFGKFSEVVQKFGLTKSNCDHSVFYRQSAVGIILLVVYV 1077
>ref|NP_916434.1| putative gag/pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1090
Score = 430 bits (1105), Expect = e-118
Identities = 270/734 (36%), Positives = 374/734 (50%), Gaps = 69/734 (9%)
Query: 486 VPSITKNLVSVSKFARDNGVFFEFHPYYCCVKSQASSKVLLQGSVGADGLYKFHEFKLSH 545
V + +NL+SV +F RDN EF + VK + +V+L+ + + L
Sbjct: 54 VANPVRNLLSVRQFTRDNKCSIEFDEFGFSVKDLQTRRVILRCNSRGE---------LYT 104
Query: 546 LPVSLSAPVQHPVSVHTSVSSSGHAPVEQPSVVSSVCTANLWHFRLGHPSLNVLRKALQF 605
LP + + H + +S LWH RLGHP +
Sbjct: 105 LPAATPSSAAHGLLATSST---------------------LWHCRLGHPGPAAIHGLRNI 143
Query: 606 CKIPVSNKMDVDFCKACVMGKSHRLPSSLSTTEYTSPLELVYSDLWGPSPSPSSSGYLYY 665
I NK+D C AC +GK RLP S++ + P ELV+ D+W SP S+SG+ YY
Sbjct: 144 ASISC-NKIDTSLCHACQLGKHTRLPFHNSSSRTSVPFELVHCDVW-TSPVMSTSGFKYY 201
Query: 666 ITFIDAYSRYTWIYLLKAKSEAISAFHQFKASSELQLNAKIKALQTDWGGEF--RVFPNF 723
+ +D +S + W +LL+ KS+ +F Q +K+ Q D G EF F
Sbjct: 202 LVVLDDFSHFCWTFLLRLKSDVHRHIVEFVEYVSTQFGLPLKSFQADNGREFVNTAITTF 261
Query: 724 LKDFGIHHRLICPHTHHQNGVVERKHRHIVDLGLSLLAHASIPLTYWDFAFSTAVYLINR 783
L G RL CP+T QNG ER R I + +LL AS+P +YW A +TA YL+NR
Sbjct: 262 LASRGTQLRLSCPYTSPQNGKAERMLRTINNSIRTLLIQASMPPSYWAEALATATYLLNR 321
Query: 784 LPTSSLQFDIPLYKLFKQIPDYTFLKVFGCTCFPLMRPYNSHKLDFRSQECVFLGYSPSH 843
P+SS+ +P L + IPD++ L+VFGC C+P + HKL RS CVFLGY SH
Sbjct: 322 RPSSSIHQSLPFQLLHRTIPDFSHLRVFGCLCYPNLSATTPHKLSPRSTACVFLGYPTSH 381
Query: 844 RGYKCL-ASSGRIYISKDVIFDEHTFPYPKLFAQNSNSPSLSPAVVLPSLPSVE-HFSQP 901
+GY+CL S+ RI IS+ V+FDE FP+ S+ L + PS+E +P
Sbjct: 382 KGYRCLDLSTHRIIISRHVVFDESQFPFAATPPAASSFDFLLQGLSPADAPSLEVEQPRP 441
Query: 902 AIAQPSSSLPSPFLPSP--------IASSDQNPSSTSP----ASAPATSEASAEIPSQVT 949
PS+ + P+LP P + + + PS+ +P +SA AT SA S +
Sbjct: 442 LTVAPSTEVEQPYLPLPSRRLSAGTVTVASEAPSAGAPLVGTSSADATPPGSATRASTIV 501
Query: 950 IP---------------TSSGQVSAPSSSGNVHPMITRSKNGIVQPRVQPTLLTVQLE-- 992
P +SS V+ ++ H M+TRS++G ++P + T Q
Sbjct: 502 SPFRHVYTRRPVTTVPPSSSTAVTNAVAAPQPHSMVTRSQSGSLRPVDRLTYTATQAAAS 561
Query: 993 --PTTVKQALAHPQWLQAMQAEFDALQKNKTWSLVPLPPGREAIGCKWVFRVKHNPDGTL 1050
P ALA P W AM E+ L N TW LV PP KW+F+ K + DG+L
Sbjct: 562 PVPANYHSALADPNWRAAMADEYKELVDNGTWRLVSRPPRANIATGKWIFKHKFHSDGSL 621
Query: 1051 NKYKARLVAKGFHQQPGFDYTETFSPVIKPVTIRVILTLALTNHWTIQQLDVNNAFLNGD 1110
+YKAR V +G+ QQ G DY ETFSPV+K TIRV+L++A + W I QLDV NAFL+G
Sbjct: 622 ARYKARWVVRGYSQQHGIDYDETFSPVVKLATIRVVLSIAASRAWPIHQLDVKNAFLHGH 681
Query: 1111 LAEEVYMQQPQGFEHD--KKLVCRLHKALYGLKQAPRAWFEKLTSALVQFGFVASKCDPS 1168
L E VY QQP GF VC L K+LYGLKQAPRAW+++ + + Q GF+ S D S
Sbjct: 682 LKETVYCQQPSGFVDPTAPDAVCLLQKSLYGLKQAPRAWYQRFATYIRQMGFMPSASDTS 741
Query: 1169 LFVLSKKPLVIYVL 1182
LFV + Y+L
Sbjct: 742 LFVYKDGDRIAYLL 755
>gb|AAU89728.1| putative retroelement pol polyprotein-like [Solanum tuberosum]
Length = 1476
Score = 427 bits (1097), Expect = e-117
Identities = 326/1143 (28%), Positives = 525/1143 (45%), Gaps = 125/1143 (10%)
Query: 87 WESKDQYLLSWLQSSLSTPVLSRMIGCAHSFQLWEKIHSFFHNQTRAKSTQLRTELRSET 146
W+ + +LSWL +++ST ++S ++ +++ +W + F ++ L + +
Sbjct: 65 WDRCNAMVLSWLMNNVSTDLVSGILFRSNATLVWNDLKERFDKVNMSRIFHLHKAIVTHV 124
Query: 147 LGNRTISEFLLQIKSIIDSLFAIGDPISP-------------REHLDVILQGLPSDYEDL 193
G +S + ++K + D +I P S R+ L L GL +Y
Sbjct: 125 QGVSPVSVYYSKLKDLWDEYDSILPPPSCDCEKSVDYTDSMLRQKLLQFLMGLNDNYGQA 184
Query: 194 ITLISTRFEEHSIDELEALLLAKEARLGKYRTPSATGEISVNVALSNPQTPSSSAVSTQS 253
+ I S+++ A+++ E++ R+ S +G+ AL + P S +Q
Sbjct: 185 RSQILMMNPSPSVNQCYAMIVQDESQ----RSLSGSGQTIDPTALFTHR-PGGSGFGSQG 239
Query: 254 ASHTTSQGESQDSDPMDSYDSSGHGRGSSRGRGARGRGRGRSSI--QCQLCYKFGHDVWQ 311
SQG S +S+ G +G R + C C GH
Sbjct: 240 -----SQGSGNGSSNGNSHRFHKGGNIYCDFCNMKGHIRANCNKLKHCTHCNMQGHTKDT 294
Query: 312 CYHRFN-PNFVPQKPPQNSPQNSQWNSSPQWHSNSQWSSTPQWNSQWSAPVSSPWQ---- 366
CY P K N + N+ + Q+ SP Q
Sbjct: 295 CYQLIGYPADYKGKKKANIVTAPSLPQMQHNNFNNNLNYPMQYTGDGIGHFVSPMQFTGN 354
Query: 367 ---HSSSQWPPRYPPA------PSGYAPMASSPGVPYRGPAPSPMGYAQAHVA-FQTSTS 416
HSS + P PS Y + P + + A+VA +S
Sbjct: 355 TNGHSSGSIAGNFGPGSVPQFTPSQYNNILQMLNKPM-------LSESSANVAGIFAGSS 407
Query: 417 TPQATSPAQSWYPDSGASHHVTSESQNVHQFTPFAGQDQLFVGNGQGLPISGIGSSTLSS 476
+ + + +W DSGA+ H+ S + ++ + ++ + G ++ GSS L+
Sbjct: 408 HCNSNTHSSAWIVDSGATDHMVSNTTLLNHGLSVSHPGKVQLPTGDSAVVTHSGSSQLTG 467
Query: 477 GLVLNNLLHVPSITKNLVSVSKFARDNGVFFEFHPYYCCVKSQASSKVLLQGSVGADGLY 536
G V+ N+L VP+ NL+SVSK ++ F P + ++ + KV G +GLY
Sbjct: 468 GDVVKNVLCVPTFQFNLLSVSKLTKELNCCVIFFPDFFIIQDLFTGKVKEIGEE-INGLY 526
Query: 537 KFHEFKLSHLPVSLSAPVQHPVSVHTSVSSSGHAPVEQPSVVSSVCTANLWHFRLGHPSL 596
++ P QH + ++++ + A +WH RLGH +
Sbjct: 527 -------------ITRPHQHHDTSKKTLAA-----------IKGCEEAEMWHKRLGHIPM 562
Query: 597 NVLRKALQFCKIPVSNKMDVDFCKACVMGKSHRLPSSLSTTEYTSPLELVYSDLWGPSPS 656
+VLRK F K+ + C C + + RLP +S + + +L++ D+WGP +
Sbjct: 563 SVLRKIKMFDS---PQKLVLPSCDVCPLARQVRLPFPISQSRSENCFDLIHLDVWGPYKA 619
Query: 657 PSSSGYLYYITFIDAYSRYTWIYLLKAKSEAISAFHQFKASSELQLNAKIKALQTDWGGE 716
+ + Y++T +D +SR+TWI+L+ KS+ + F + Q KIK ++D G E
Sbjct: 620 ATHNKMRYFLTVVDDHSRWTWIFLMHLKSDVSTVLQNFILMIDTQFGQKIKIFRSDNGTE 679
Query: 717 F--RVFPNFLKDFGIHHRLICPHTHHQNGVVERKHRHIVDLGLSLLAHASIPLTYWDFAF 774
F K GI H+ CPHT QNGVVER+H+HI++ +L +P+ +W
Sbjct: 680 FFNAQCDGLFKSHGIVHQSSCPHTPQQNGVVERRHKHILETARALRFQGHLPIRFWGECV 739
Query: 775 STAVYLINRLPTSSLQFDIPLYKLFKQIPDYTFLKVFGCTCFPLMRPYNSHKLDFRSQEC 834
+AV++INR+P+S L P ++K+ PD ++++V GC C
Sbjct: 740 LSAVHIINRIPSSVLHNKSPFELMYKRSPDLSYMRVIGCLC-----------------HA 782
Query: 835 VFLGYSPSHRGYKCL-ASSGRIYISKDVIFDEHTFPYPKLFAQNSNSPSLSPA----VVL 889
L + + +GYK ++S+D++F+E FP+ SP+L+ V L
Sbjct: 783 TNLVNTSTQKGYKLYDLEHQHFFVSRDMVFNEAVFPF--------QSPALADPHDTPVFL 834
Query: 890 PSLPSVEHFS-----QPAIAQPSSSLPSPFLPSPIASSDQNPSSTSPASAPATSEASAEI 944
S P H QPAI +P PS ++ +P P + I
Sbjct: 835 ASPPCSSHTEDADAVQPAIITSEEIIPVASPPSAVSDDHLHPP---PERRRSYRTGKPPI 891
Query: 945 PSQVTIPTSSGQVSAPSSSGNVHPMITRSKNGIVQPRVQPTLLT--VQLEPTTVKQALAH 1002
+ I TS+ + S+ ++P+ + Q + + V+ EP QA
Sbjct: 892 WQKDFITTSTSR-----SNHCLYPISDNIDYSCLSSTYQCYIASSSVETEPQFYYQAAND 946
Query: 1003 PQWLQAMQAEFDALQKNKTWSLVPLPPGREAIGCKWVFRVKHNPDGTLNKYKARLVAKGF 1062
+W+ AM+ E AL+ NKTW +V LP G++AIGCKWV+++K+ G + ++KARLVAKG+
Sbjct: 947 CRWVHAMKEEIQALEDNKTWEVVSLPKGKKAIGCKWVYKIKYKASGEIERFKARLVAKGY 1006
Query: 1063 HQQPGFDYTETFSPVIKPVTIRVILTLALTNHWTIQQLDVNNAFLNGDLAEEVYMQQPQG 1122
+Q+ G DY ETFSPV+K VT+R +LTLA++ W IQQ+DV NAFL GDL EEVYMQ PQG
Sbjct: 1007 NQKEGLDYQETFSPVVKMVTLRTVLTLAVSKGWDIQQMDVYNAFLQGDLIEEVYMQLPQG 1066
Query: 1123 FEHDK---KLVCRLHKALYGLKQAPRAWFEKLTSALVQFGFVASKCDPSLFVLSKKPLVI 1179
F++DK VCRL K+LYGLKQA R W KLT+AL+ GF S D SL + ++
Sbjct: 1067 FQYDKTGDPKVCRLLKSLYGLKQASRQWNVKLTTALLAAGFQQSHLDYSLMLKRTADGIV 1126
Query: 1180 YVL 1182
VL
Sbjct: 1127 IVL 1129
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.132 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,222,807,593
Number of Sequences: 2540612
Number of extensions: 104599503
Number of successful extensions: 685036
Number of sequences better than 10.0: 4387
Number of HSP's better than 10.0 without gapping: 1883
Number of HSP's successfully gapped in prelim test: 2775
Number of HSP's that attempted gapping in prelim test: 636922
Number of HSP's gapped (non-prelim): 30881
length of query: 1182
length of database: 863,360,394
effective HSP length: 139
effective length of query: 1043
effective length of database: 510,215,326
effective search space: 532154585018
effective search space used: 532154585018
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (35.8 bits)
Lotus: description of TM0336.1