BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0197.11
(301 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL34159.1| putative glycine-rich, zinc-finger DNA-binding pr... 320 3e-86
gb|AAD03571.1| putative glycine-rich, zinc-finger DNA-binding pr... 320 3e-86
emb|CAB81511.1| glycine-rich protein [Arabidopsis thaliana] gi|3... 317 3e-85
ref|XP_463912.1| putative Glycine-rich protein 2 [Oryza sativa (... 261 2e-68
dbj|BAB78536.2| cold shock protein-1 [Triticum aestivum] 238 1e-61
dbj|BAD08701.1| cold shock domain protein 3 [Triticum aestivum] 233 7e-60
ref|XP_479920.1| putative cold shock protein-1 [Oryza sativa (ja... 220 4e-56
emb|CAA42622.1| nsGRP-2 [Nicotiana sylvestris] gi|121631|sp|P274... 208 1e-52
dbj|BAD08700.1| cold shock domain protein 2 [Triticum aestivum] ... 208 2e-52
emb|CAB80532.1| glycine-rich protein 2 (GRP2) [Arabidopsis thali... 202 7e-51
dbj|BAE00180.1| VASA RNA helicase [Daphnia magna] 193 6e-48
dbj|BAD99522.1| VASA RNA helicase [Daphnia magna] 186 9e-46
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-binding ... 185 1e-45
dbj|BAB12217.1| vasa homolog [Ciona savignyi] 178 2e-43
gb|AAB47542.1| nucleic acid binding protein [Trypanosoma equiper... 172 1e-41
gb|AAD29810.1| glycine-rich protein (AtGRP2) [Arabidopsis thalia... 171 2e-41
ref|XP_331315.1| hypothetical protein [Neurospora crassa] gi|289... 167 3e-40
dbj|BAD99524.1| VASA RNA helicase [Moina macrocopa] 165 1e-39
gb|AAC61751.1| poly-zinc finger protein 1 [Trypanosoma cruzi] 164 3e-39
gb|EAL20847.1| hypothetical protein CNBE2080 [Cryptococcus neofo... 162 1e-38
>gb|AAL34159.1| putative glycine-rich, zinc-finger DNA-binding protein [Arabidopsis
thaliana] gi|14334920|gb|AAK59638.1| putative
glycine-rich, zinc-finger DNA-binding protein
[Arabidopsis thaliana] gi|18398546|ref|NP_565427.1|
cold-shock DNA-binding family protein [Arabidopsis
thaliana]
Length = 301
Score = 320 bits (820), Expect = 3e-86
Identities = 164/311 (52%), Positives = 197/311 (62%), Gaps = 42/311 (13%)
Query: 5 RFSGVVQWFNNVKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDLVEFSIATGDNDKT 64
R G V WF++ KG+GFI PDDGGE+LFVHQSSI SDG+R+L G+ VE+ IA G + KT
Sbjct: 10 RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69
Query: 65 KAVDVTGPNGAALQPTRKDSAPRGFGGWRGGERRNGGGGGGGGGGCYNCGDTGHLARDCH 124
KA++VT P G +L +K+++ RG GG C+NCG+ GH+A+DC
Sbjct: 70 KAIEVTAPGGGSLN--KKENSSRG-----------------SGGNCFNCGEVGHMAKDCD 110
Query: 125 -----RSNNNGGG---GGGAACYNCGDAGHLARDCNRSNN-NSGGGGAG---CYNCGDTG 172
+S GGG GG CY CGD GH ARDC +S NSGGGG G CY+CG+ G
Sbjct: 111 GGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVG 170
Query: 173 HLARDC------NRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRC 226
HLA+DC NR GG G GG CY CGG GH ARDC + G G GG GS +C+ C
Sbjct: 171 HLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGS-TCYTC 229
Query: 227 GGIGHMARDCATAKGPSSGGVGGGGCFRCGEVGHLARDCD-GGVAVSGGGGNAGRNTCFN 285
GG+GH+A+ C T+K PS GG GG C+ CG GHLARDCD G SGGGG G N CF
Sbjct: 230 GGVGHIAKVC-TSKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSSGGGG--GSNKCFI 286
Query: 286 CGKPGHFAREC 296
CGK GHFAREC
Sbjct: 287 CGKEGHFAREC 297
Score = 131 bits (329), Expect = 3e-29
Identities = 65/136 (47%), Positives = 81/136 (58%), Gaps = 15/136 (11%)
Query: 179 NRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNG----GGGGP---GSASCFRCGGIGH 231
N+ NS G GG C+ CG GH+A+DC G G GGGG G C+ CG +GH
Sbjct: 83 NKKENSSRGSGGN--CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGH 140
Query: 232 MARDCATAKGPSSGGVGGGG--CFRCGEVGHLARDCDGGVAVS----GGGGNAGRNTCFN 285
ARDC + G +SGG GGGG C+ CGEVGHLA+DC GG + GGG +G + C+
Sbjct: 141 FARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYM 200
Query: 286 CGKPGHFARECIEASG 301
CG GHFAR+C + G
Sbjct: 201 CGGVGHFARDCRQNGG 216
>gb|AAD03571.1| putative glycine-rich, zinc-finger DNA-binding protein [Arabidopsis
thaliana] gi|7442089|pir||T00837 glycine-rich protein
T13L16.11 - Arabidopsis thaliana
Length = 299
Score = 320 bits (820), Expect = 3e-86
Identities = 164/311 (52%), Positives = 197/311 (62%), Gaps = 42/311 (13%)
Query: 5 RFSGVVQWFNNVKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDLVEFSIATGDNDKT 64
R G V WF++ KG+GFI PDDGGE+LFVHQSSI SDG+R+L G+ VE+ IA G + KT
Sbjct: 8 RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 67
Query: 65 KAVDVTGPNGAALQPTRKDSAPRGFGGWRGGERRNGGGGGGGGGGCYNCGDTGHLARDCH 124
KA++VT P G +L +K+++ RG GG C+NCG+ GH+A+DC
Sbjct: 68 KAIEVTAPGGGSLN--KKENSSRG-----------------SGGNCFNCGEVGHMAKDCD 108
Query: 125 -----RSNNNGGG---GGGAACYNCGDAGHLARDCNRSNN-NSGGGGAG---CYNCGDTG 172
+S GGG GG CY CGD GH ARDC +S NSGGGG G CY+CG+ G
Sbjct: 109 GGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVG 168
Query: 173 HLARDC------NRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRC 226
HLA+DC NR GG G GG CY CGG GH ARDC + G G GG GS +C+ C
Sbjct: 169 HLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGS-TCYTC 227
Query: 227 GGIGHMARDCATAKGPSSGGVGGGGCFRCGEVGHLARDCD-GGVAVSGGGGNAGRNTCFN 285
GG+GH+A+ C T+K PS GG GG C+ CG GHLARDCD G SGGGG G N CF
Sbjct: 228 GGVGHIAKVC-TSKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSSGGGG--GSNKCFI 284
Query: 286 CGKPGHFAREC 296
CGK GHFAREC
Sbjct: 285 CGKEGHFAREC 295
Score = 131 bits (329), Expect = 3e-29
Identities = 65/136 (47%), Positives = 81/136 (58%), Gaps = 15/136 (11%)
Query: 179 NRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNG----GGGGP---GSASCFRCGGIGH 231
N+ NS G GG C+ CG GH+A+DC G G GGGG G C+ CG +GH
Sbjct: 81 NKKENSSRGSGGN--CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGH 138
Query: 232 MARDCATAKGPSSGGVGGGG--CFRCGEVGHLARDCDGGVAVS----GGGGNAGRNTCFN 285
ARDC + G +SGG GGGG C+ CGEVGHLA+DC GG + GGG +G + C+
Sbjct: 139 FARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYM 198
Query: 286 CGKPGHFARECIEASG 301
CG GHFAR+C + G
Sbjct: 199 CGGVGHFARDCRQNGG 214
>emb|CAB81511.1| glycine-rich protein [Arabidopsis thaliana]
gi|3036806|emb|CAA18496.1| glycine-rich protein
[Arabidopsis thaliana] gi|15233440|ref|NP_195326.1|
cold-shock DNA-binding family protein [Arabidopsis
thaliana] gi|7442090|pir||T05494 glycine-rich protein
T19K4.150 - Arabidopsis thaliana
Length = 299
Score = 317 bits (812), Expect = 3e-85
Identities = 160/309 (51%), Positives = 190/309 (60%), Gaps = 40/309 (12%)
Query: 5 RFSGVVQWFNNVKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDLVEFSIATGDNDKT 64
R +G V WFN KG+GFI PDDG +LFVHQSSI S+GYR+L GD VEF+I G + KT
Sbjct: 10 RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69
Query: 65 KAVDVTGPNGAALQPTRKDSAPRGFGGWRGGERRNGGGGGGGGGGCYNCGDTGHLARDCH 124
KAV+VT P G +L +K++ RG NG GGGG GCYNCG+ GH+++DC
Sbjct: 70 KAVNVTAPGGGSL---KKENNSRG----------NGARRGGGGSGCYNCGELGHISKDCG 116
Query: 125 RSNNNGGGG----GGAACYNCGDAGHLARDCNRSNNN-----SGGGGAGCYNCGDTGHLA 175
GGG GG CYNCGD GH ARDC + N + GG GCY CGD GH+A
Sbjct: 117 IGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVA 176
Query: 176 RDCNRSNNSGGGG-----GGGGACYTCGGFGHLARDCMR---GGNGGGGGPGSASCFRCG 227
RDC + + G GG CYTCG GH ARDC + GN GG GS +C+ CG
Sbjct: 177 RDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCG 236
Query: 228 GIGHMARDCATAKGPSSGGVGGGGCFRCGEVGHLARDCDGGVAVSGGGGNAGRNTCFNCG 287
G+GH+ARDCAT + PS G C++CG GHLARDCD SGGGGN N C+ CG
Sbjct: 237 GVGHIARDCATKRQPSRG------CYQCGGSGHLARDCDQ--RGSGGGGND--NACYKCG 286
Query: 288 KPGHFAREC 296
K GHFAREC
Sbjct: 287 KEGHFAREC 295
Score = 126 bits (317), Expect = 7e-28
Identities = 60/136 (44%), Positives = 75/136 (55%), Gaps = 9/136 (6%)
Query: 172 GHLARDCNRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGG---GPGSASCFRCGG 228
G L ++ N N GGGG CY CG GH+++DC GG GGGG G C+ CG
Sbjct: 80 GSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGD 139
Query: 229 IGHMARDCATA-KGPSSGGVGGG--GCFRCGEVGHLARDCDGGVAVSG---GGGNAGRNT 282
GH ARDC +A G G GG GC+ CG+VGH+ARDC +G G G +
Sbjct: 140 TGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDG 199
Query: 283 CFNCGKPGHFARECIE 298
C+ CG GHFAR+C +
Sbjct: 200 CYTCGDVGHFARDCTQ 215
Score = 93.6 bits (231), Expect = 6e-18
Identities = 39/81 (48%), Positives = 47/81 (57%), Gaps = 5/81 (6%)
Query: 99 NGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNS 158
N GGGG G CY+CG GH+ARDC G CY CG +GHLARDC++ +
Sbjct: 221 NVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRG-----CYQCGGSGHLARDCDQRGSGG 275
Query: 159 GGGGAGCYNCGDTGHLARDCN 179
GG CY CG GH AR+C+
Sbjct: 276 GGNDNACYKCGKEGHFARECS 296
Score = 91.3 bits (225), Expect = 3e-17
Identities = 44/120 (36%), Positives = 58/120 (47%), Gaps = 4/120 (3%)
Query: 185 GGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAKGPSS 244
G G T G G L ++ GNG G G + C+ CG +GH+++DC G
Sbjct: 64 GSDGKTKAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGG 123
Query: 245 G---GVGGGGCFRCGEVGHLARDC-DGGVAVSGGGGNAGRNTCFNCGKPGHFARECIEAS 300
G GG GC+ CG+ GH ARDC G G G + C+ CG GH AR+C + S
Sbjct: 124 GERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKS 183
>ref|XP_463912.1| putative Glycine-rich protein 2 [Oryza sativa (japonica
cultivar-group)] gi|51963818|ref|XP_506692.1| PREDICTED
OSJNBb0088N06.21 gene product [Oryza sativa (japonica
cultivar-group)] gi|41052743|dbj|BAD07599.1| putative
Glycine-rich protein 2 [Oryza sativa (japonica
cultivar-group)] gi|41052630|dbj|BAD08139.1| putative
Glycine-rich protein 2 [Oryza sativa (japonica
cultivar-group)]
Length = 241
Score = 261 bits (666), Expect = 2e-68
Identities = 128/250 (51%), Positives = 154/250 (61%), Gaps = 28/250 (11%)
Query: 2 AEERFSGVVQWFNNVKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDLVEFSIATGDN 61
A R G V+WFN+ KGFGFI PDDG EDLFVHQSSI++DG+R+L EG+ VEF+I+ ++
Sbjct: 3 AAARHRGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSLAEGEQVEFAISESED 62
Query: 62 DKTKAVDVTGPNGAALQPTRKDSAPRGFGGWRGGERRNGGGGGGGGGGCYNCGDTGHLAR 121
+TKAVDVTGP+G+ ++ G GG GG GGGG GGGG Y G
Sbjct: 63 GRTKAVDVTGPDGSFVK-----GGAGGGGGGGGGFGSRGGGGSGGGGRSYGGSWGG---- 113
Query: 122 DCHRSNNNGGGGGGAACYNCGDAGHLARDC--------NRSNNNSGGGGAGCYNCGDTGH 173
+GGGG G C+ CG++GH+ARDC GG G GC+ CG+ GH
Sbjct: 114 ----GRRSGGGGPGGGCFKCGESGHMARDCFNGGGVGVGGGGGGGGGAGGGCFKCGEMGH 169
Query: 174 LARDCNRSNNSGGGGGG---GGACYTCGGFGHLARDCMRGGNGGG----GGPGSASCFRC 226
+ARDC S GGGGGG GGACY CG GHLARDC GG GGG GG G SC+ C
Sbjct: 170 MARDCFNSGGGGGGGGGGGGGGACYNCGETGHLARDCYNGGGGGGGGRFGGGGDRSCYNC 229
Query: 227 GGIGHMARDC 236
G GH+ARDC
Sbjct: 230 GEAGHIARDC 239
Score = 127 bits (318), Expect = 5e-28
Identities = 69/151 (45%), Positives = 79/151 (51%), Gaps = 28/151 (18%)
Query: 158 SGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGG 217
+GGGG G G G GGG GGGG Y G +G G GGGG
Sbjct: 82 AGGGGGGGGGFGSRG------------GGGSGGGGRSYG-GSWGG-------GRRSGGGG 121
Query: 218 PGSASCFRCGGIGHMARDCATAKGPSSGGVGGGG------CFRCGEVGHLARDC-DGGVA 270
PG CF+CG GHMARDC G GG GGGG CF+CGE+GH+ARDC + G
Sbjct: 122 PGGG-CFKCGESGHMARDCFNGGGVGVGGGGGGGGGAGGGCFKCGEMGHMARDCFNSGGG 180
Query: 271 VSGGGGNAGRNTCFNCGKPGHFARECIEASG 301
GGGG G C+NCG+ GH AR+C G
Sbjct: 181 GGGGGGGGGGGACYNCGETGHLARDCYNGGG 211
Score = 97.8 bits (242), Expect = 3e-19
Identities = 40/67 (59%), Positives = 48/67 (70%), Gaps = 5/67 (7%)
Query: 92 WRGGERRNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGG-----GGAACYNCGDAGH 146
+ G GGGGGGGGG CYNCG+TGHLARDC+ GGGG G +CYNCG+AGH
Sbjct: 175 FNSGGGGGGGGGGGGGGACYNCGETGHLARDCYNGGGGGGGGRFGGGGDRSCYNCGEAGH 234
Query: 147 LARDCNR 153
+ARDC++
Sbjct: 235 IARDCHK 241
Score = 53.1 bits (126), Expect = 9e-06
Identities = 41/117 (35%), Positives = 43/117 (36%), Gaps = 53/117 (45%)
Query: 185 GGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAKGPSS 244
G GGGGGG GGFG RGG G GGG G S
Sbjct: 81 GAGGGGGGG----GGFGS------RGGGGSGGG-----------------------GRSY 107
Query: 245 GGVGGGGCFRCGEVGHLARDCDGGVAVSGGGGNAGRNTCFNCGKPGHFARECIEASG 301
GG GGG SGGGG G CF CG+ GH AR+C G
Sbjct: 108 GGSWGGG------------------RRSGGGGPGG--GCFKCGESGHMARDCFNGGG 144
>dbj|BAB78536.2| cold shock protein-1 [Triticum aestivum]
Length = 229
Score = 238 bits (608), Expect = 1e-61
Identities = 129/271 (47%), Positives = 147/271 (53%), Gaps = 58/271 (21%)
Query: 4 ERFSGVVQWFNNVKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDLVEFSIATGDNDK 63
ER G V+WFN KGFGFI P+DG EDLFVHQS+I+SDGYR+L E D VEF + TGD+ +
Sbjct: 3 ERVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDTVEFEVITGDDGR 62
Query: 64 TKAVDVTGPNGAALQPTRKDSAPRGFGGWRGGERRNGGGGGGGGGGCYNCGDTGHLARDC 123
TKA DVT P G AL S P GG RGG GGGG GGGGG
Sbjct: 63 TKASDVTAPGGGALSG---GSRPGDGGGDRGGRGGYGGGGYGGGGG-------------- 105
Query: 124 HRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNN 183
GG GGG Y G G+ GGGG GCY CG+ GH++RDC +
Sbjct: 106 -----GGGYGGGGGGYGGGGGGY----------GGGGGGRGCYKCGEEGHISRDCPQGGG 150
Query: 184 SGGG---------GGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMAR 234
GGG GGGG CY CG GH++RDC +GG GGGGG GG G
Sbjct: 151 GGGGYGGGGYGGGGGGGRECYKCGEEGHISRDCPQGGGGGGGG---------GGYG---- 197
Query: 235 DCATAKGPSSGGVGGGGCFRCGEVGHLARDC 265
G GG GGGGCF CGE GH +R+C
Sbjct: 198 ----GGGGRGGGGGGGGCFSCGESGHFSREC 224
>dbj|BAD08701.1| cold shock domain protein 3 [Triticum aestivum]
Length = 231
Score = 233 bits (593), Expect = 7e-60
Identities = 127/252 (50%), Positives = 143/252 (56%), Gaps = 47/252 (18%)
Query: 4 ERFSGVVQWFNNVKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDLVEFSIATGDNDK 63
ER G V+WFN KGFGFI PDDGGEDLFVHQS+I+SDGYR+L E D VEF I TGD+ +
Sbjct: 3 ERVKGTVKWFNVTKGFGFISPDDGGEDLFVHQSAIKSDGYRSLNENDAVEFEIITGDDGR 62
Query: 64 TKAVDVTGPNGAALQPTRKDSAPRGFGGWRGGERRNGGGGGG--GGGGCYNCGDTGHLAR 121
TKA DVT P G AL S P GG RGG GGGGGG GGGG Y G G+
Sbjct: 63 TKASDVTAPGGGALSG---GSRPGEGGGDRGGRGGYGGGGGGYGGGGGGYGGGGGGY--- 116
Query: 122 DCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRS 181
GGGGGG Y G G GGGG GCY CG+ GH++RDC +
Sbjct: 117 --------GGGGGG---YGGGGYG-----------GGGGGGRGCYKCGEDGHISRDCPQG 154
Query: 182 NNSGGG---------GGGGGACYTCGGFGHLARDCMRGGNGG--------GGGPGSASCF 224
GGG GGGG CY CG GH++RDC +GG GG GGG G CF
Sbjct: 155 GGGGGGYGGGGYGGGGGGGRECYKCGEEGHISRDCPQGGGGGGYGGGGGRGGGGGGGGCF 214
Query: 225 RCGGIGHMARDC 236
CG GH +R+C
Sbjct: 215 SCGESGHFSREC 226
>ref|XP_479920.1| putative cold shock protein-1 [Oryza sativa (japonica
cultivar-group)] gi|51964662|ref|XP_507115.1| PREDICTED
P0582D05.112 gene product [Oryza sativa (japonica
cultivar-group)] gi|29467522|dbj|BAC66711.1| putative
cold shock protein-1 [Oryza sativa (japonica
cultivar-group)]
Length = 197
Score = 220 bits (560), Expect = 4e-56
Identities = 126/269 (46%), Positives = 147/269 (53%), Gaps = 81/269 (30%)
Query: 1 MAEERFSGVVQWFNNVKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDLVEFSIATGD 60
MA ER G V+WF+ KGFGFI PDDGGEDLFVHQSS++SDGYR+L +GD+VEFS+ +G+
Sbjct: 1 MASERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVGSGN 60
Query: 61 NDKTKAVDVTGPNGAALQPTRKDSAPRGFGGWRGGERRNGGG----GGGGGGGCYNCGDT 116
+ +TKAVDVT P G AL GG R +GGG GGGGGGG Y GD
Sbjct: 61 DGRTKAVDVTAPGGGALT---------------GGSRPSGGGDRGYGGGGGGGRYG-GDR 104
Query: 117 GHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLAR 176
G+ GGGGGG Y GD G+ GGGG G
Sbjct: 105 GY-----------GGGGGG---YGGGDRGY-----------GGGGGYG------------ 127
Query: 177 DCNRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDC 236
GGGGGG ACY CG GH+ARDC +GG GGGG G +R GG
Sbjct: 128 --------GGGGGGSRACYKCGEEGHMARDCSQGGGGGGGYGGGGGGYRGGG-------- 171
Query: 237 ATAKGPSSGGVGGGGCFRCGEVGHLARDC 265
GG GGGGC+ CGE GH+AR+C
Sbjct: 172 --------GGGGGGGCYNCGETGHIAREC 192
Score = 90.5 bits (223), Expect = 5e-17
Identities = 53/126 (42%), Positives = 62/126 (49%), Gaps = 20/126 (15%)
Query: 185 GGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAKGPSS 244
GGG GG+ + GG D GG GGGG G + GG G+ D G
Sbjct: 73 GGGALTGGSRPSGGG------DRGYGGGGGGGRYGGDRGYGGGGGGYGGGDRGYGGGGGY 126
Query: 245 GGVGGGG---CFRCGEVGHLARDCD-----------GGVAVSGGGGNAGRNTCFNCGKPG 290
GG GGGG C++CGE GH+ARDC GG GGGG G C+NCG+ G
Sbjct: 127 GGGGGGGSRACYKCGEEGHMARDCSQGGGGGGGYGGGGGGYRGGGGGGGGGGCYNCGETG 186
Query: 291 HFAREC 296
H AREC
Sbjct: 187 HIAREC 192
>emb|CAA42622.1| nsGRP-2 [Nicotiana sylvestris] gi|121631|sp|P27484|GRP2_NICSY
Glycine-rich protein 2
Length = 214
Score = 208 bits (530), Expect = 1e-52
Identities = 112/225 (49%), Positives = 136/225 (59%), Gaps = 26/225 (11%)
Query: 1 MAEE---RFSGVVQWFNNVKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDLVEFSIA 57
MAEE R G V+WF++ KGFGFI PDDGGEDLFVHQS IRS+G+R+L EG+ VEF +
Sbjct: 1 MAEESGQRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVE 60
Query: 58 TGDNDKTKAVDVTGPNGAALQPTRKDSAP---RGFGGWRGGERRNGGGGGGGGGGCYNCG 114
+G + +TKAVDVTGP+GAA+Q R RG GG+ GG GGGG GG G Y G
Sbjct: 61 SGGDGRTKAVDVTGPDGAAVQGGRGGGGGGGGRGGGGYGGGSGGYGGGGRGGSRG-YGGG 119
Query: 115 DTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHL 174
D G+ GGG GG + Y G G+ GGG+GC+ CG++GH
Sbjct: 120 DGGY---------GGGGGYGGGSRYGGGGGGYGGG--GGYGGGGSGGGSGCFKCGESGHF 168
Query: 175 ARDCNRSN--------NSGGGGGGGGACYTCGGFGHLARDCMRGG 211
ARDC++S GGGGGGGG CY CG GH AR+C GG
Sbjct: 169 ARDCSQSGGGGGGGRFGGGGGGGGGGGCYKCGEDGHFARECTSGG 213
>dbj|BAD08700.1| cold shock domain protein 2 [Triticum aestivum]
gi|40363759|dbj|BAD06324.1| putative glycine-rich
protein [Triticum aestivum]
Length = 205
Score = 208 bits (529), Expect = 2e-52
Identities = 120/262 (45%), Positives = 138/262 (51%), Gaps = 64/262 (24%)
Query: 4 ERFSGVVQWFNNVKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDLVEFSIATGDNDK 63
ER G V+WFN KGFGFI P+DG EDLFVHQS+I++DGYR+L E D+VEF + TGD+ +
Sbjct: 3 ERLKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKADGYRSLNENDVVEFEVITGDDGR 62
Query: 64 TKAVDVTGPNGAALQPTRKDSAPRGFGGWRGGERRNGGGGGGGGGGCYNCGDTGHLARDC 123
TKA DVT P G AL + S G G RGG GGG GGGGGG Y G G+
Sbjct: 63 TKATDVTAPGGGALAGGSRPSEGGGDRGGRGGGGYGGGGYGGGGGG-YGGGGGGY----- 116
Query: 124 HRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNN 183
GGGGG G G+ GGGG G Y
Sbjct: 117 ------GGGGGSYG----GGGGY-----------GGGGGGGRY----------------- 138
Query: 184 SGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAKGPS 243
GGG GGG CY CG GH++RDC +GG GGGGG G GG G
Sbjct: 139 -GGGSGGGRECYKCGEEGHISRDCPQGGGGGGGGYGGG-----GGRG------------- 179
Query: 244 SGGVGGGGCFRCGEVGHLARDC 265
GG GGGGCF CGE GH +R+C
Sbjct: 180 -GGGGGGGCFSCGESGHFSREC 200
>emb|CAB80532.1| glycine-rich protein 2 (GRP2) [Arabidopsis thaliana]
gi|4467155|emb|CAB37524.1| glycine-rich protein 2 (GRP2)
[Arabidopsis thaliana] gi|14532850|gb|AAK64107.1|
putative glycine-rich protein 2 [Arabidopsis thaliana]
gi|13430580|gb|AAK25912.1| putative glycine-rich protein
GRP2 [Arabidopsis thaliana] gi|22137152|gb|AAM91421.1|
AT4g38680/F20M13_240 [Arabidopsis thaliana]
gi|259445|gb|AAB24074.1| glycine-rich protein; atGRP
[Arabidopsis thaliana] gi|15234010|ref|NP_195580.1|
cold-shock DNA-binding family protein [Arabidopsis
thaliana] gi|14326487|gb|AAK60289.1|
AT4g38680/F20M13_240 [Arabidopsis thaliana]
gi|81624|pir||JQ1061 glycine-rich protein 2 -
Arabidopsis thaliana
Length = 203
Score = 202 bits (515), Expect = 7e-51
Identities = 104/211 (49%), Positives = 127/211 (59%), Gaps = 20/211 (9%)
Query: 4 ERFSGVVQWFNNVKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDLVEFSIATGDNDK 63
ER G V+WF+ KGFGFI PDDGG+DLFVHQSSIRS+G+R+L + VEF + +N++
Sbjct: 9 ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68
Query: 64 TKAVDVTGPNGAALQPTR---KDSAPRGFGGWRGGERRNGGGGGGGGGGCYNCGDTGHLA 120
KA+DV+GP+GA +Q GFGG RGG R +GGG GGGGGG G
Sbjct: 69 PKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYGGGGGGYGGRG------ 122
Query: 121 RDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNR 180
GGG GG+ CY CG+ GH+ARDC+ GGGG G Y G G+
Sbjct: 123 ---------GGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGG-YG-GGGGYGGGGGGY 171
Query: 181 SNNSGGGGGGGGACYTCGGFGHLARDCMRGG 211
GGGGGGG+CY+CG GH ARDC GG
Sbjct: 172 GGGGRGGGGGGGSCYSCGESGHFARDCTSGG 202
Score = 84.7 bits (208), Expect = 3e-15
Identities = 51/137 (37%), Positives = 59/137 (42%), Gaps = 46/137 (33%)
Query: 183 NSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAKGP 242
NSGGG GG GGFG GG GGG G G GG G G
Sbjct: 85 NSGGGSSGGR-----GGFG--------GGRGGGRGSGGGYGGGGGGYG----------GR 121
Query: 243 SSGGVGGGGCFRCGEVGHLARDCD-----------------------GGVAVSGGGGNAG 279
GG GG C++CGE GH+ARDC GG G GG G
Sbjct: 122 GGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGG 181
Query: 280 RNTCFNCGKPGHFAREC 296
+C++CG+ GHFAR+C
Sbjct: 182 GGSCYSCGESGHFARDC 198
>dbj|BAE00180.1| VASA RNA helicase [Daphnia magna]
Length = 779
Score = 193 bits (490), Expect = 6e-48
Identities = 85/183 (46%), Positives = 112/183 (60%), Gaps = 10/183 (5%)
Query: 83 DSAPRGFGGWRGGERRNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCG 142
D PRG GGW G +G GGG C+ CG+ GH+AR+C + GGGGG AC+ CG
Sbjct: 116 DDQPRG-GGW-GSTGASGLKSTGGGRPCHKCGEEGHMARECPKGGG-GGGGGSRACHKCG 172
Query: 143 DAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGGFGH 202
+ GH +R+C ++ G G C+ CG+ GH +R+C + GGGGGG AC+ CG GH
Sbjct: 173 EEGHFSRECPQAGGGGGSGPRTCHKCGEEGHFSRECPQGGGGGGGGGGSRACHKCGEEGH 232
Query: 203 LARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAKGPSSGGVGGGGCFRCGEVGHLA 262
+R+C +GG GGG GP +C +CG GHM+RDC P GG G G CF+C E GH +
Sbjct: 233 FSRECPQGGGGGGSGP--RTCHKCGEEGHMSRDC-----PQGGGGGDGKCFKCHEAGHTS 285
Query: 263 RDC 265
+DC
Sbjct: 286 KDC 288
Score = 176 bits (447), Expect = 6e-43
Identities = 87/220 (39%), Positives = 119/220 (53%), Gaps = 32/220 (14%)
Query: 84 SAPRGFGGWRGGER----RNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACY 139
+AP GGW E +N GGG + G +G + GGG C+
Sbjct: 94 TAPASSGGWNAPESTSQFKNDFDDQPRGGGWGSTGASGLKST-----------GGGRPCH 142
Query: 140 NCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGG 199
CG+ GH+AR+C + GGG C+ CG+ GH +R+C ++ GGGG G C+ CG
Sbjct: 143 KCGEEGHMARECPKGGGGGGGGSRACHKCGEEGHFSRECPQAG--GGGGSGPRTCHKCGE 200
Query: 200 FGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAKGPSSGGVGGGG---CFRCG 256
GH +R+C +GG GGGGG GS +C +CG GH +R+C P GG GG G C +CG
Sbjct: 201 EGHFSRECPQGGGGGGGGGGSRACHKCGEEGHFSREC-----PQGGGGGGSGPRTCHKCG 255
Query: 257 EVGHLARDCDGGVAVSGGGGNAGRNTCFNCGKPGHFAREC 296
E GH++RDC GGGG G+ CF C + GH +++C
Sbjct: 256 EEGHMSRDCP-----QGGGGGDGK--CFKCHEAGHTSKDC 288
Score = 152 bits (384), Expect = 1e-35
Identities = 67/148 (45%), Positives = 88/148 (59%), Gaps = 8/148 (5%)
Query: 154 SNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNG 213
S S GGG C+ CG+ GH+AR+C + GGGGGG AC+ CG GH +R+C + G G
Sbjct: 130 SGLKSTGGGRPCHKCGEEGHMARECPKGG--GGGGGGSRACHKCGEEGHFSRECPQAGGG 187
Query: 214 GGGGPGSASCFRCGGIGHMARDCATAKGPSSGGVGGGGCFRCGEVGHLARDCDGGVAVSG 273
GG GP +C +CG GH +R+C G GG G C +CGE GH +R+C G G
Sbjct: 188 GGSGP--RTCHKCGEEGHFSRECPQGGGGGGGGGGSRACHKCGEEGHFSRECPQG----G 241
Query: 274 GGGNAGRNTCFNCGKPGHFARECIEASG 301
GGG +G TC CG+ GH +R+C + G
Sbjct: 242 GGGGSGPRTCHKCGEEGHMSRDCPQGGG 269
Score = 34.3 bits (77), Expect = 4.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 267 GGVAVSGGGGNAGRNTCFNCGKPGHFARECIEASG 301
G SG G C CG+ GH AREC + G
Sbjct: 125 GSTGASGLKSTGGGRPCHKCGEEGHMARECPKGGG 159
>dbj|BAD99522.1| VASA RNA helicase [Daphnia magna]
Length = 775
Score = 186 bits (471), Expect = 9e-46
Identities = 84/183 (45%), Positives = 111/183 (59%), Gaps = 14/183 (7%)
Query: 83 DSAPRGFGGWRGGERRNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCG 142
D PRG GGW G NG GGG C+ CG+ GH+AR+C + GGGGG AC+ CG
Sbjct: 116 DDQPRG-GGW-GSSGANGLKSTGGGRPCHKCGEEGHMARECPKGG--GGGGGSRACHKCG 171
Query: 143 DAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGGFGH 202
+ GH +R+C ++ G G C+ CG+ GH +R+C + GGGGGG AC+ CG GH
Sbjct: 172 EEGHFSRECPQAGGGGGSGPRTCHKCGEEGHFSRECPQG---GGGGGGSRACHKCGEEGH 228
Query: 203 LARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAKGPSSGGVGGGGCFRCGEVGHLA 262
+R+C +GG GGG GP +C +CG GH++RDC P GG G CF+C E GH +
Sbjct: 229 FSRECPQGGGGGGSGP--RTCHKCGEEGHVSRDC-----PQGGGGGDSKCFKCHEAGHTS 281
Query: 263 RDC 265
+DC
Sbjct: 282 KDC 284
Score = 162 bits (409), Expect = 1e-38
Identities = 85/220 (38%), Positives = 117/220 (52%), Gaps = 36/220 (16%)
Query: 84 SAPRGFGGWRGGER----RNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACY 139
+AP GGW E +N GGG + G +N GGG C+
Sbjct: 94 TAPASSGGWNAPESTSQFKNDFDDQPRGGGWGSSG-----------ANGLKSTGGGRPCH 142
Query: 140 NCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGG 199
CG+ GH+AR+C + GGG C+ CG+ GH +R+C ++ GGGG G C+ CG
Sbjct: 143 KCGEEGHMARECPKGGGG-GGGSRACHKCGEEGHFSRECPQAG--GGGGSGPRTCHKCGE 199
Query: 200 FGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAKGPSSGGVGGGG---CFRCG 256
GH +R+C +GG GGGG S +C +CG GH +R+C P GG GG G C +CG
Sbjct: 200 EGHFSRECPQGGGGGGG---SRACHKCGEEGHFSREC-----PQGGGGGGSGPRTCHKCG 251
Query: 257 EVGHLARDCDGGVAVSGGGGNAGRNTCFNCGKPGHFAREC 296
E GH++RDC G GGGG++ CF C + GH +++C
Sbjct: 252 EEGHVSRDCPQG----GGGGDS---KCFKCHEAGHTSKDC 284
Score = 148 bits (373), Expect = 2e-34
Identities = 68/146 (46%), Positives = 89/146 (60%), Gaps = 16/146 (10%)
Query: 158 SGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGG 217
S GGG C+ CG+ GH+AR+C + GGGGGG AC+ CG GH +R+C + G GGG G
Sbjct: 134 STGGGRPCHKCGEEGHMARECPKG---GGGGGGSRACHKCGEEGHFSRECPQAGGGGGSG 190
Query: 218 PGSASCFRCGGIGHMARDCATAKGPSSGGVGGGG--CFRCGEVGHLARDCDGGVAVSGGG 275
P +C +CG GH +R+C P GG GGG C +CGE GH +R+C G GGG
Sbjct: 191 P--RTCHKCGEEGHFSREC-----PQGGGGGGGSRACHKCGEEGHFSRECPQG----GGG 239
Query: 276 GNAGRNTCFNCGKPGHFARECIEASG 301
G +G TC CG+ GH +R+C + G
Sbjct: 240 GGSGPRTCHKCGEEGHVSRDCPQGGG 265
Score = 118 bits (295), Expect = 2e-25
Identities = 66/182 (36%), Positives = 87/182 (47%), Gaps = 30/182 (16%)
Query: 133 GGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGG---- 188
G A G++ + + +SGG A T D + GG G
Sbjct: 74 GWDAPAPKAGNSSDWGAPASTAPASSGGWNAP----ESTSQFKNDFDDQPRGGGWGSSGA 129
Query: 189 ------GGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAKGP 242
GGG C+ CG GH+AR+C +GG GGGG S +C +CG GH +R+C P
Sbjct: 130 NGLKSTGGGRPCHKCGEEGHMARECPKGGGGGGG---SRACHKCGEEGHFSREC-----P 181
Query: 243 SSGGVGGGG---CFRCGEVGHLARDCDGGVAVSGGGGNAGRNTCFNCGKPGHFARECIEA 299
+GG GG G C +CGE GH +R+C GGGG G C CG+ GHF+REC +
Sbjct: 182 QAGGGGGSGPRTCHKCGEEGHFSRECP-----QGGGGGGGSRACHKCGEEGHFSRECPQG 236
Query: 300 SG 301
G
Sbjct: 237 GG 238
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-binding protein)
gi|159342|gb|AAA29245.1| HEXBP DNA binding protein
Length = 271
Score = 185 bits (470), Expect = 1e-45
Identities = 86/206 (41%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 110 CYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCG 169
C+ CG+ GH++R+C +G G C+ CG+AGH++RDC S G CY CG
Sbjct: 45 CFRCGEEGHMSRECPNEARSGAAGA-MTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCG 103
Query: 170 DTGHLARDCNRSNNSGGGGGG---------GG-----ACYTCGGFGHLARDCMRGGNGGG 215
GHL+RDC S GG G GG CY CG GH++RDC G GG
Sbjct: 104 QEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDC-PNGQGGY 162
Query: 216 GGPGSASCFRCGGIGHMARDCATAKGPSSGGVGGGGCFRCGEVGHLARDCDGGVAVSGGG 275
G G +C++CG GH++RDC +G S G G C++CGE GH++R+C S G
Sbjct: 163 SGAGDRTCYKCGDAGHISRDCPNGQGGYS-GAGDRKCYKCGESGHMSRECP-----SAGS 216
Query: 276 GNAGRNTCFNCGKPGHFARECIEASG 301
+G C+ CGKPGH +REC EA G
Sbjct: 217 TGSGDRACYKCGKPGHISRECPEAGG 242
Score = 181 bits (460), Expect = 2e-44
Identities = 89/213 (41%), Positives = 113/213 (52%), Gaps = 28/213 (13%)
Query: 103 GGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGG- 161
G G C+ CG+ GH++RDC S G G CY CG GHL+RDC S S GG
Sbjct: 65 GAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKG-FECYKCGQEGHLSRDCPSSQGGSRGGY 123
Query: 162 -------GAG--------CYNCGDTGHLARDCNRSNNSGG-GGGGGGACYTCGGFGHLAR 205
GA CY CGD GH++RDC N GG G G CY CG GH++R
Sbjct: 124 GQKRGRSGAQGGYSGDRTCYKCGDAGHISRDC--PNGQGGYSGAGDRTCYKCGDAGHISR 181
Query: 206 DCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAKGPSSGGVGGG--GCFRCGEVGHLAR 263
DC G GG G G C++CG GHM+R+C PS+G G G C++CG+ GH++R
Sbjct: 182 DCPNG-QGGYSGAGDRKCYKCGESGHMSREC-----PSAGSTGSGDRACYKCGKPGHISR 235
Query: 264 DCDGGVAVSGGGGNAGRNTCFNCGKPGHFAREC 296
+C GG G TC+ CG+ GH +R+C
Sbjct: 236 ECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDC 268
Score = 171 bits (433), Expect = 2e-41
Identities = 80/204 (39%), Positives = 111/204 (54%), Gaps = 21/204 (10%)
Query: 110 CYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCG 169
C NCG GH AR+C +++ G C+ CG+ GH++R+C + G C+ CG
Sbjct: 18 CRNCGKEGHYARECPEADSKGDERS-TTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCG 76
Query: 170 DTGHLARDCNRSNNSGGGGGGGGACYTCGGFGHLARDC------MRGGNG--------GG 215
+ GH++RDC N++ G G CY CG GHL+RDC RGG G G
Sbjct: 77 EAGHMSRDC--PNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQG 134
Query: 216 GGPGSASCFRCGGIGHMARDCATAKGPSSGGVGGGGCFRCGEVGHLARDCDGGVAVSGGG 275
G G +C++CG GH++RDC +G S G G C++CG+ GH++RDC G GG
Sbjct: 135 GYSGDRTCYKCGDAGHISRDCPNGQGGYS-GAGDRTCYKCGDAGHISRDCPNG---QGGY 190
Query: 276 GNAGRNTCFNCGKPGHFARECIEA 299
AG C+ CG+ GH +REC A
Sbjct: 191 SGAGDRKCYKCGESGHMSRECPSA 214
Score = 154 bits (388), Expect = 4e-36
Identities = 71/162 (43%), Positives = 94/162 (57%), Gaps = 11/162 (6%)
Query: 86 PRGFGGWRGG--ERRNGGGGGGGGGG---CYNCGDTGHLARDCHRSNNNGGGGGGAACYN 140
P GG RGG ++R G GG G CY CGD GH++RDC G G CY
Sbjct: 113 PSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYK 172
Query: 141 CGDAGHLARDC-NRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGG 199
CGDAGH++RDC N SG G CY CG++GH++R+C ++G G G ACY CG
Sbjct: 173 CGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSREC---PSAGSTGSGDRACYKCGK 229
Query: 200 FGHLARDCMRGGN--GGGGGPGSASCFRCGGIGHMARDCATA 239
GH++R+C G GG G G +C++CG GH++RDC ++
Sbjct: 230 PGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPSS 271
Score = 143 bits (361), Expect = 5e-33
Identities = 67/182 (36%), Positives = 97/182 (52%), Gaps = 27/182 (14%)
Query: 137 ACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYT 196
+C NCG GH AR+C +++ C+ CG+ GH++R+C N + G G C+
Sbjct: 17 SCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSREC--PNEARSGAAGAMTCFR 74
Query: 197 CGGFGHLARDCMRGGNGGGGGPGSA---SCFRCGGIGHMARDCATAKGPSSGGVG----- 248
CG GH++RDC PG+A C++CG GH++RDC +++G S GG G
Sbjct: 75 CGEAGHMSRDCPNSAK-----PGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGR 129
Query: 249 ----GG-----GCFRCGEVGHLARDCDGGVAVSGGGGNAGRNTCFNCGKPGHFARECIEA 299
GG C++CG+ GH++RDC G GG AG TC+ CG GH +R+C
Sbjct: 130 SGAQGGYSGDRTCYKCGDAGHISRDCPNG---QGGYSGAGDRTCYKCGDAGHISRDCPNG 186
Query: 300 SG 301
G
Sbjct: 187 QG 188
Score = 72.4 bits (176), Expect = 2e-11
Identities = 35/77 (45%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 220 SASCFRCGGIGHMARDCATAKGPSSGGVGGGGCFRCGEVGHLARDCDGGVAVSGGGGNAG 279
S SC CG GH AR+C A S G CFRCGE GH++R+C G AG
Sbjct: 15 STSCRNCGKEGHYARECPEA--DSKGDERSTTCFRCGEEGHMSRECPN----EARSGAAG 68
Query: 280 RNTCFNCGKPGHFAREC 296
TCF CG+ GH +R+C
Sbjct: 69 AMTCFRCGEAGHMSRDC 85
>dbj|BAB12217.1| vasa homolog [Ciona savignyi]
Length = 770
Score = 178 bits (451), Expect = 2e-43
Identities = 80/192 (41%), Positives = 113/192 (58%), Gaps = 17/192 (8%)
Query: 88 GFGGWRGGERRNGGG---GGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDA 144
GFGG G G G G GC+ CG+ GH++R+C + GGG G C+ CG+
Sbjct: 83 GFGGGFGSSSGGGFGDTRGSSRSKGCFKCGEEGHMSRECPQG---GGGSRGKGCFKCGEE 139
Query: 145 GHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSG-GGGGGGGACYTCGGFGHL 203
GH++R+C + GGGG GC+ CG+ GH++R+C + +SG G C+ CG GH+
Sbjct: 140 GHMSRECPKGGGGGGGGGRGCFKCGEEGHMSRECPKGGDSGFEGRSRSKGCFKCGEEGHM 199
Query: 204 ARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAKGPSSGGVG-GGGCFRCGEVGHLA 262
+R+C +GG GG G + CF+CG GHM+R+C P GG G G GCF+CGE GH++
Sbjct: 200 SRECPQGGGGGRG----SGCFKCGEEGHMSREC-----PQGGGGGRGSGCFKCGEEGHMS 250
Query: 263 RDCDGGVAVSGG 274
R+C + GG
Sbjct: 251 RECPRNTSGEGG 262
Score = 169 bits (427), Expect = 1e-40
Identities = 84/199 (42%), Positives = 113/199 (56%), Gaps = 32/199 (16%)
Query: 100 GGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSG 159
GGG G GG + GDT G C+ CG+ GH++R+C + G
Sbjct: 85 GGGFGSSSGGGF--GDTR-------------GSSRSKGCFKCGEEGHMSRECPQGGG--G 127
Query: 160 GGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPG 219
G GC+ CG+ GH++R+C + GGGGGGG C+ CG GH++R+C +GG+ G G
Sbjct: 128 SRGKGCFKCGEEGHMSRECPKGG--GGGGGGGRGCFKCGEEGHMSRECPKGGDSGFEGRS 185
Query: 220 -SASCFRCGGIGHMARDCATAKGPSSGGVG-GGGCFRCGEVGHLARDCDGGVAVSGGGGN 277
S CF+CG GHM+R+C P GG G G GCF+CGE GH++R+C GGGG
Sbjct: 186 RSKGCFKCGEEGHMSREC-----PQGGGGGRGSGCFKCGEEGHMSRECP-----QGGGGG 235
Query: 278 AGRNTCFNCGKPGHFAREC 296
G + CF CG+ GH +REC
Sbjct: 236 RG-SGCFKCGEEGHMSREC 253
Score = 148 bits (374), Expect = 2e-34
Identities = 91/239 (38%), Positives = 120/239 (50%), Gaps = 47/239 (19%)
Query: 88 GFGGWRG-GERRNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGH 146
GFGG GE + GGG G G D G D ++ N+ G G G + G
Sbjct: 17 GFGGGSSFGETISKGGGRGRG----KFADRG----DYNQPNDYGFGSGFGKSDDGGFGSK 68
Query: 147 LARDCNRSN------------NNSGGG---------GAGCYNCGDTGHLARDCNRSNNSG 185
+SN ++SGGG GC+ CG+ GH++R+C + G
Sbjct: 69 PNSGFGKSNFDDDTGFGGGFGSSSGGGFGDTRGSSRSKGCFKCGEEGHMSRECPQ----G 124
Query: 186 GGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAKGPSSG 245
GGG G C+ CG GH++R+C +GG GGGGG CF+CG GHM+R+C KG SG
Sbjct: 125 GGGSRGKGCFKCGEEGHMSRECPKGGGGGGGG--GRGCFKCGEEGHMSRECP--KGGDSG 180
Query: 246 GVGGG---GCFRCGEVGHLARDCDGGVAVSGGGGNAGRNTCFNCGKPGHFARECIEASG 301
G GCF+CGE GH++R+C GGGG G CF CG+ GH +REC + G
Sbjct: 181 FEGRSRSKGCFKCGEEGHMSRECP-----QGGGGGRGSG-CFKCGEEGHMSRECPQGGG 233
>gb|AAB47542.1| nucleic acid binding protein [Trypanosoma equiperdum]
Length = 270
Score = 172 bits (435), Expect = 1e-41
Identities = 84/200 (42%), Positives = 108/200 (54%), Gaps = 13/200 (6%)
Query: 106 GGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSG-GGGAG 164
GG C+ CG GH AR+C N G G ACY CG HL+RDC + + GGG
Sbjct: 15 GGNNCHRCGQPGHFAREC--PNVPPGAMGDRACYTCGQPDHLSRDCPSNRGTAPMGGGRA 72
Query: 165 CYNCGDTGHLARDCNRSNNSGGGG---GGGGACYTCGGFGHLARDC--MRGGNGGGGGPG 219
CYNCG GH +R+C GG GGG ACY C GH +R+C MRGG GG G
Sbjct: 73 CYNCGQPGHFSRECPNMRGGPMGGAPMGGGRACYNCVQPGHFSRECPNMRGGPMGGAPMG 132
Query: 220 SA-SCFRCGGIGHMARDCATAKGPSSGGVGGGGCFRCGEVGHLARDCDGGV--AVSGGGG 276
+C+ CG GH +R+C +G + GG G C++C + GH+A +C A +GG
Sbjct: 133 GGRACYHCGQPGHFSRECPNMRGANMGG--GRECYQCRQEGHIASECPNAPDDAAAGGTA 190
Query: 277 NAGRNTCFNCGKPGHFAREC 296
G C+ CG+PGH +R C
Sbjct: 191 AGGGRACYKCGQPGHLSRAC 210
Score = 153 bits (386), Expect = 7e-36
Identities = 78/188 (41%), Positives = 97/188 (51%), Gaps = 18/188 (9%)
Query: 103 GGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDC-NRSNNNSG-- 159
G G CY CG HL+RDC + GGG ACYNCG GH +R+C N G
Sbjct: 38 GAMGDRACYTCGQPDHLSRDCPSNRGTAPMGGGRACYNCGQPGHFSRECPNMRGGPMGGA 97
Query: 160 --GGGAGCYNCGDTGHLARDCNRSNNSGGGG---GGGGACYTCGGFGHLARDC--MRGGN 212
GGG CYNC GH +R+C GG GGG ACY CG GH +R+C MRG N
Sbjct: 98 PMGGGRACYNCVQPGHFSRECPNMRGGPMGGAPMGGGRACYHCGQPGHFSRECPNMRGAN 157
Query: 213 GGGGGPGSASCFRCGGIGHMARDCATAKGPSSGG----VGGGGCFRCGEVGHLARDCDGG 268
GGG C++C GH+A +C A ++ G GG C++CG+ GHL+R C
Sbjct: 158 MGGG----RECYQCRQEGHIASECPNAPDDAAAGGTAAGGGRACYKCGQPGHLSRACPVT 213
Query: 269 VAVSGGGG 276
+ GG
Sbjct: 214 IRTDSKGG 221
Score = 136 bits (342), Expect = 8e-31
Identities = 71/172 (41%), Positives = 89/172 (51%), Gaps = 12/172 (6%)
Query: 134 GGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGA 193
GG C+ CG GH AR+C + G A CY CG HL+RDC SN GGG A
Sbjct: 15 GGNNCHRCGQPGHFARECPNVPPGAMGDRA-CYTCGQPDHLSRDCP-SNRGTAPMGGGRA 72
Query: 194 CYTCGGFGHLARDC--MRGGNGGGGGPGSA-SCFRCGGIGHMARDCATAKGPSSGGV--- 247
CY CG GH +R+C MRGG GG G +C+ C GH +R+C +G GG
Sbjct: 73 CYNCGQPGHFSRECPNMRGGPMGGAPMGGGRACYNCVQPGHFSRECPNMRGGPMGGAPMG 132
Query: 248 GGGGCFRCGEVGHLARDCDGGVAVSGGGGNAGRNTCFNCGKPGHFARECIEA 299
GG C+ CG+ GH +R+C + GGG C+ C + GH A EC A
Sbjct: 133 GGRACYHCGQPGHFSRECPNMRGANMGGGRE----CYQCRQEGHIASECPNA 180
Score = 121 bits (303), Expect = 3e-26
Identities = 64/163 (39%), Positives = 85/163 (51%), Gaps = 16/163 (9%)
Query: 147 LARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGGFGHLARD 206
+A + + + + GG C+ CG GH AR+C N G G ACYTCG HL+RD
Sbjct: 1 MADEASTAKRHRAEGGNNCHRCGQPGHFARECP---NVPPGAMGDRACYTCGQPDHLSRD 57
Query: 207 CM--RGGNGGGGGPGSASCFRCGGIGHMARDCATAKGPSSGGV---GGGGCFRCGEVGHL 261
C RG GGG +C+ CG GH +R+C +G GG GG C+ C + GH
Sbjct: 58 CPSNRGTAPMGGG---RACYNCGQPGHFSRECPNMRGGPMGGAPMGGGRACYNCVQPGHF 114
Query: 262 ARDCD---GGVAVSGGGGNAGRNTCFNCGKPGHFARECIEASG 301
+R+C GG GG G C++CG+PGHF+REC G
Sbjct: 115 SRECPNMRGGPM--GGAPMGGGRACYHCGQPGHFSRECPNMRG 155
Score = 112 bits (279), Expect = 2e-23
Identities = 57/123 (46%), Positives = 69/123 (55%), Gaps = 10/123 (8%)
Query: 93 RGGERRNGGGGGGGGGGCYNCGDTGHLARDC--HRSNNNGGG--GGGAACYNCGDAGHLA 148
RGG GG GGG CYNC GH +R+C R GG GGG ACY+CG GH +
Sbjct: 90 RGGPM--GGAPMGGGRACYNCVQPGHFSRECPNMRGGPMGGAPMGGGRACYHCGQPGHFS 147
Query: 149 RDCNRSNNNSGGGGAGCYNCGDTGHLARDC-NRSNNSGGGG---GGGGACYTCGGFGHLA 204
R+C + GGG CY C GH+A +C N +++ GG GGG ACY CG GHL+
Sbjct: 148 RECPNMRGANMGGGRECYQCRQEGHIASECPNAPDDAAAGGTAAGGGRACYKCGQPGHLS 207
Query: 205 RDC 207
R C
Sbjct: 208 RAC 210
Score = 83.2 bits (204), Expect = 9e-15
Identities = 43/104 (41%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 93 RGGERRNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGG-GGGAACYNCGDAGHLARDC 151
RGG GG GGG CY+CG GH +R+C N G GGG CY C GH+A +C
Sbjct: 122 RGGPM--GGAPMGGGRACYHCGQPGHFSREC--PNMRGANMGGGRECYQCRQEGHIASEC 177
Query: 152 NR------SNNNSGGGGAGCYNCGDTGHLARDCN---RSNNSGG 186
+ + GGG CY CG GHL+R C R+++ GG
Sbjct: 178 PNAPDDAAAGGTAAGGGRACYKCGQPGHLSRACPVTIRTDSKGG 221
>gb|AAD29810.1| glycine-rich protein (AtGRP2) [Arabidopsis thaliana]
gi|60543359|gb|AAX22277.1| At2g21060 [Arabidopsis
thaliana] gi|16323178|gb|AAL15323.1| At2g21060/F26H11.18
[Arabidopsis thaliana] gi|17366505|sp|Q38896|GRP2B_ARATH
Glycine-rich protein 2b (AtGRP2b)
gi|15226451|ref|NP_179702.1| cold-shock DNA-binding
family protein / glycine-rich protein (GRP2)
[Arabidopsis thaliana] gi|1063684|gb|AAA91165.1| AtGRP2b
Length = 201
Score = 171 bits (434), Expect = 2e-41
Identities = 97/235 (41%), Positives = 124/235 (52%), Gaps = 50/235 (21%)
Query: 4 ERFSGVVQWFNNVKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDLVEFSIATGDNDK 63
+R G V+WF+ KGFGFI P DGG+DLFVHQSSIRS+G+R+L + VEF + ++ +
Sbjct: 13 DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72
Query: 64 TKAVDVTGPNGAALQPTRKDSAPRGFGGWRGGERRNGGGGGGGGGGCYNCGDTGHLARDC 123
KA++V+GP+GA P + +S G G RGG GG GGG GGG Y G G
Sbjct: 73 PKAIEVSGPDGA---PVQGNSGGGGSSGGRGGFGGGGGRGGGRGGGSYGGGYGGR----- 124
Query: 124 HRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNN 183
+GG GGG GG C+ CG+ GH+AR+C++
Sbjct: 125 ----GSGGRGGG------------------------GGDNSCFKCGEPGHMARECSQGGG 156
Query: 184 SGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCAT 238
GGGGGG Y GG G GG GGG SC+ CG GH ARDC +
Sbjct: 157 GYSGGGGGGR-YGSGGGG--------GGGGGG-----LSCYSCGESGHFARDCTS 197
Score = 90.5 bits (223), Expect = 5e-17
Identities = 58/131 (44%), Positives = 66/131 (50%), Gaps = 41/131 (31%)
Query: 183 NSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAKGP 242
NSGGGG GG GGFG GG G GGG G S GG G G
Sbjct: 89 NSGGGGSSGGR----GGFG--------GGGGRGGGRGGGSYG--GGYG----------GR 124
Query: 243 SSGGVGGGG----CFRCGEVGHLARDC-DGGVAVS------------GGGGNAGRNTCFN 285
SGG GGGG CF+CGE GH+AR+C GG S GGGG G +C++
Sbjct: 125 GSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYS 184
Query: 286 CGKPGHFAREC 296
CG+ GHFAR+C
Sbjct: 185 CGESGHFARDC 195
>ref|XP_331315.1| hypothetical protein [Neurospora crassa] gi|28922111|gb|EAA31369.1|
hypothetical protein [Neurospora crassa]
Length = 183
Score = 167 bits (423), Expect = 3e-40
Identities = 84/207 (40%), Positives = 106/207 (50%), Gaps = 45/207 (21%)
Query: 106 GGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGC 165
G C+ CG T H ARDC G A CYNCG+ GH++RDC ++ C
Sbjct: 9 GTRACFTCGQTTHQARDCPNK-------GAAKCYNCGNEGHMSRDCPEGPKDNA---RTC 58
Query: 166 YNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGGFGHLARDCMRG-----------GNGG 214
Y CG TGH++RDC++S GGG G CY CG GH+AR+C +G G GG
Sbjct: 59 YRCGQTGHISRDCSQS---GGGQSSGAECYKCGEVGHIARNCSKGGASYGGGYQNSGYGG 115
Query: 215 GGGPGSASCFRCGGIGHMARDCATAKGPSSGGVGGGGCFRCGEVGHLARDC--DGGVAVS 272
G G +C+ CGGIGHM+RDC V G C+ CGE GH +RDC D G
Sbjct: 116 GFGGPQKTCYSCGGIGHMSRDC----------VNGSKCYNCGESGHFSRDCPKDSG---- 161
Query: 273 GGGGNAGRNTCFNCGKPGHFARECIEA 299
+G C+ C +PGH +C A
Sbjct: 162 -----SGEKICYKCQQPGHVQSQCPSA 183
Score = 139 bits (350), Expect = 1e-31
Identities = 72/181 (39%), Positives = 96/181 (52%), Gaps = 41/181 (22%)
Query: 134 GGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGA 193
G AC+ CG H ARDC G A CYNCG+ GH++RDC G
Sbjct: 9 GTRACFTCGQTTHQARDCPNK------GAAKCYNCGNEGHMSRDCPE-----GPKDNART 57
Query: 194 CYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAKGPSSGGVG----- 248
CY CG GH++RDC + G G G A C++CG +GH+AR+C+ KG +S G G
Sbjct: 58 CYRCGQTGHISRDCSQSGGGQSSG---AECYKCGEVGHIARNCS--KGGASYGGGYQNSG 112
Query: 249 -GGG-------CFRCGEVGHLARDCDGGVAVSGGGGNAGRNTCFNCGKPGHFARECIEAS 300
GGG C+ CG +GH++RDC G + C+NCG+ GHF+R+C + S
Sbjct: 113 YGGGFGGPQKTCYSCGGIGHMSRDCVNG------------SKCYNCGESGHFSRDCPKDS 160
Query: 301 G 301
G
Sbjct: 161 G 161
Score = 96.3 bits (238), Expect = 1e-18
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 25/119 (21%)
Query: 101 GGGGGGGGGCYNCGDTGHLARDC----------HRSNNNGGGGGG--AACYNCGDAGHLA 148
GGG G CY CG+ GH+AR+C ++++ GGG GG CY+CG GH++
Sbjct: 75 GGGQSSGAECYKCGEVGHIARNCSKGGASYGGGYQNSGYGGGFGGPQKTCYSCGGIGHMS 134
Query: 149 RDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGGFGHLARDC 207
RDC G+ CYNCG++GH +RDC + + G G CY C GH+ C
Sbjct: 135 RDC--------VNGSKCYNCGESGHFSRDCPKDS-----GSGEKICYKCQQPGHVQSQC 180
Score = 79.7 bits (195), Expect = 9e-14
Identities = 39/92 (42%), Positives = 50/92 (53%), Gaps = 15/92 (16%)
Query: 90 GGWRGGERRNGGGGGGGGGG---CYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGH 146
G GG +N G GGG GG CY+CG GH++RDC G+ CYNCG++GH
Sbjct: 101 GASYGGGYQNSGYGGGFGGPQKTCYSCGGIGHMSRDC---------VNGSKCYNCGESGH 151
Query: 147 LARDCNRSNNNSGGGGAGCYNCGDTGHLARDC 178
+RDC + +SG G CY C GH+ C
Sbjct: 152 FSRDCPK---DSGSGEKICYKCQQPGHVQSQC 180
>dbj|BAD99524.1| VASA RNA helicase [Moina macrocopa]
Length = 843
Score = 165 bits (418), Expect = 1e-39
Identities = 79/182 (43%), Positives = 101/182 (55%), Gaps = 16/182 (8%)
Query: 90 GGW---RGGERRNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGH 146
GGW GG+R +G GGG GC+NCGDT H++R+C G G CYNCGD+GH
Sbjct: 181 GGWGAPNGGDRGSGPRQGGGSRGCFNCGDTNHMSRECPNPKKEGNSRG--TCYNCGDSGH 238
Query: 147 LARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGGFGHLARD 206
++R+C S G CYNC GH+++DC G C CG GH+AR+
Sbjct: 239 MSRECPNPKKESSSRGT-CYNCQQEGHMSKDCPNPKVERSRG-----CRNCGEDGHMARE 292
Query: 207 CMR---GGNGGGGGPGSASCFRCGGIGHMARDCATAKGPSSGGVGGGGCFRCGEVGHLAR 263
C GNGGG G+ +CF CG GH ++DC K +S G GGG CFRC H+A+
Sbjct: 293 CPSKNGDGNGGGDRGGNRACFNCGEEGHQSKDC--EKPRTSKGGGGGACFRCQSTDHMAK 350
Query: 264 DC 265
DC
Sbjct: 351 DC 352
Score = 152 bits (384), Expect = 1e-35
Identities = 89/249 (35%), Positives = 111/249 (43%), Gaps = 45/249 (18%)
Query: 70 TGPNGAALQPTR---------KDSAPRGFGGWRGGERRNGG--------GGGGGGGGCYN 112
+GP G P + K+ PRG GW G GG G GGG G N
Sbjct: 131 SGPAGFGTSPKKASTGGWGADKEEQPRG-AGW--GSSNQGGTGWGTSNQGASGGGWGAPN 187
Query: 113 CGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTG 172
GD G R GGG C+NCGD H++R+C G CYNCGD+G
Sbjct: 188 GGDRGSGPRQ---------GGGSRGCFNCGDTNHMSRECPNPKKEGNSRGT-CYNCGDSG 237
Query: 173 HLARDCNRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHM 232
H++R+C G CY C GH+++DC G C CG GHM
Sbjct: 238 HMSRECPNPKKESSSRG---TCYNCQQEGHMSKDCPNPKVERSRG-----CRNCGEDGHM 289
Query: 233 ARDCATAKGPSSGGVGGGG---CFRCGEVGHLARDCDGGVAVSGGGGNAGRNTCFNCGKP 289
AR+C + G +GG GG CF CGE GH ++DC+ GGGG A CF C
Sbjct: 290 ARECPSKNGDGNGGGDRGGNRACFNCGEEGHQSKDCEKPRTSKGGGGGA----CFRCQST 345
Query: 290 GHFARECIE 298
H A++C E
Sbjct: 346 DHMAKDCPE 354
Score = 101 bits (252), Expect = 2e-20
Identities = 69/224 (30%), Positives = 93/224 (40%), Gaps = 46/224 (20%)
Query: 83 DSAPRGFGGWRGGERRNGGGGGGGGGGCYNCGDTGHLARDCHR-----SNNNGGGGGGAA 137
D+ P+ GGW +++G G G + G G + R S+N GG G G
Sbjct: 116 DAQPKS-GGWGSPPQKSGPAGFGTSPKKASTGGWGADKEEQPRGAGWGSSNQGGTGWGT- 173
Query: 138 CYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTC 197
SN + GGG G N GD G R GGG C+ C
Sbjct: 174 ----------------SNQGASGGGWGAPNGGDRGSGPRQ----------GGGSRGCFNC 207
Query: 198 GGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAKGPSSGGVGGGGCFRCGE 257
G H++R+C N G +C+ CG GHM+R+C K SS G C+ C +
Sbjct: 208 GDTNHMSRECP---NPKKEGNSRGTCYNCGDSGHMSRECPNPKKESSSR---GTCYNCQQ 261
Query: 258 VGHLARDCDGGVAVSGGGGNAGRNTCFNCGKPGHFARECIEASG 301
GH+++DC G C NCG+ GH AREC +G
Sbjct: 262 EGHMSKDCPNPKVERSRG-------CRNCGEDGHMARECPSKNG 298
Score = 94.7 bits (234), Expect = 3e-18
Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 109 GCYNCGDTGHLARDCHRSNNNGGGGG----GAACYNCGDAGHLARDCNRSNNNSGGGGAG 164
GC NCG+ GH+AR+C N +G GGG AC+NCG+ GH ++DC + + GGGG
Sbjct: 279 GCRNCGEDGHMARECPSKNGDGNGGGDRGGNRACFNCGEEGHQSKDCEKPRTSKGGGGGA 338
Query: 165 CYNCGDTGHLARDCNRSN 182
C+ C T H+A+DC N
Sbjct: 339 CFRCQSTDHMAKDCPEPN 356
Score = 84.0 bits (206), Expect = 5e-15
Identities = 61/205 (29%), Positives = 79/205 (37%), Gaps = 39/205 (19%)
Query: 103 GGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSG--- 159
G G + D G A GG G+ G AG S G
Sbjct: 93 GEWGQASAQSNNDWGDAAPGQFADAQPKSGGWGSPPQKSGPAGFGTSPKKASTGGWGADK 152
Query: 160 -----GGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGG 214
G G G N G TG ++N G GGG GA GG+ G
Sbjct: 153 EEQPRGAGWGSSNQGGTGW------GTSNQGASGGGWGA--------------PNGGDRG 192
Query: 215 GG---GPGSASCFRCGGIGHMARDCATAKGPSSGGVGGGGCFRCGEVGHLARDCDGGVAV 271
G G GS CF CG HM+R+C P G G C+ CG+ GH++R+C
Sbjct: 193 SGPRQGGGSRGCFNCGDTNHMSREC---PNPKKEGNSRGTCYNCGDSGHMSRECPNPKKE 249
Query: 272 SGGGGNAGRNTCFNCGKPGHFAREC 296
S + R TC+NC + GH +++C
Sbjct: 250 S-----SSRGTCYNCQQEGHMSKDC 269
Score = 38.1 bits (87), Expect = 0.31
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 104 GGGGGGCYNCGDTGHLARDCHRSN 127
GGGGG C+ C T H+A+DC N
Sbjct: 333 GGGGGACFRCQSTDHMAKDCPEPN 356
>gb|AAC61751.1| poly-zinc finger protein 1 [Trypanosoma cruzi]
Length = 193
Score = 164 bits (415), Expect = 3e-39
Identities = 81/192 (42%), Positives = 102/192 (52%), Gaps = 16/192 (8%)
Query: 105 GGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAG 164
GGG C+ CG+TGH AR+C N G G ACYNCG GHL+R C + GG A
Sbjct: 15 GGGSTCHRCGETGHFAREC--PNIPPGAMGDRACYNCGQPGHLSRGCPTRPPGAMGGRA- 71
Query: 165 CYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCF 224
CYNCG GH +R+C G GG ACY CG GHL+R+C G G +C+
Sbjct: 72 CYNCGQPGHPSRECP---TRPPGAMGGRACYNCGQPGHLSRECP---TRPPGTMGDRACY 125
Query: 225 RCGGIGHMARDCATAKGPSSGGVGGGGCFRCGEVGHLARDCDGGVAVSGGGGNAGRNTCF 284
+CG +GH++R+C GV G C+ C + GHLARDC G C+
Sbjct: 126 KCGRMGHLSRECPNRPAGGFRGVARGACYHCQQEGHLARDCPNAPP-------GGERACY 178
Query: 285 NCGKPGHFAREC 296
NCG+ GH +R C
Sbjct: 179 NCGQTGHTSRAC 190
Score = 139 bits (351), Expect = 8e-32
Identities = 70/163 (42%), Positives = 86/163 (51%), Gaps = 11/163 (6%)
Query: 103 GGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGG 162
G G CYNCG GHL+R C G GG ACYNCG GH +R+C + GG
Sbjct: 39 GAMGDRACYNCGQPGHLSRGC--PTRPPGAMGGRACYNCGQPGHPSRECPTRPPGAMGGR 96
Query: 163 AGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSAS 222
A CYNCG GHL+R+C G G ACY CG GHL+R+C GG G +
Sbjct: 97 A-CYNCGQPGHLSREC---PTRPPGTMGDRACYKCGRMGHLSRECPNRPAGGFRGVARGA 152
Query: 223 CFRCGGIGHMARDCATAKGPSSGGVGGGGCFRCGEVGHLARDC 265
C+ C GH+ARDC P++ G C+ CG+ GH +R C
Sbjct: 153 CYHCQQEGHLARDC-----PNAPPGGERACYNCGQTGHTSRAC 190
Score = 136 bits (343), Expect = 7e-31
Identities = 68/167 (40%), Positives = 91/167 (53%), Gaps = 12/167 (7%)
Query: 133 GGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGG 192
GGG+ C+ CG+ GH AR+C + G A CYNCG GHL+R C G GG
Sbjct: 15 GGGSTCHRCGETGHFARECPNIPPGAMGDRA-CYNCGQPGHLSRGCP---TRPPGAMGGR 70
Query: 193 ACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAKGPSSGGVGGGGC 252
ACY CG GH +R+C G GG +C+ CG GH++R+C T G +G C
Sbjct: 71 ACYNCGQPGHPSRECPTRPPGAMGG---RACYNCGQPGHLSRECPTRP---PGTMGDRAC 124
Query: 253 FRCGEVGHLARDCDGGVAVSGGGGNAGRNTCFNCGKPGHFARECIEA 299
++CG +GHL+R+C A GG R C++C + GH AR+C A
Sbjct: 125 YKCGRMGHLSRECPNRPA--GGFRGVARGACYHCQQEGHLARDCPNA 169
Score = 58.9 bits (141), Expect = 2e-07
Identities = 28/55 (50%), Positives = 30/55 (53%), Gaps = 4/55 (7%)
Query: 97 RRNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDC 151
R GG G G CY+C GHLARDC N GG ACYNCG GH +R C
Sbjct: 140 RPAGGFRGVARGACYHCQQEGHLARDC----PNAPPGGERACYNCGQTGHTSRAC 190
>gb|EAL20847.1| hypothetical protein CNBE2080 [Cryptococcus neoformans var.
neoformans B-3501A] gi|57227106|gb|AAW43565.1|
DNA-binding protein hexbp, putative [Cryptococcus
neoformans var. neoformans JEC21]
gi|58267432|ref|XP_570872.1| DNA-binding protein hexbp,
putative [Cryptococcus neoformans var. neoformans JEC21]
Length = 204
Score = 162 bits (409), Expect = 1e-38
Identities = 81/216 (37%), Positives = 108/216 (49%), Gaps = 46/216 (21%)
Query: 103 GGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGG 162
G G C+ CG GH+A C CYNCG +GHL+R+C + N +
Sbjct: 3 GAPRGSSCFKCGQQGHVAAACPAE--------APTCYNCGLSGHLSRECPQPKNKA---- 50
Query: 163 AGCYNCGDTGHLARDCNRSNNSGGGGG--GGGACYTCGGFGHLARDCMR----------- 209
CY CG GHL+ C + + +GG GG GGG CY CG GH+AR C
Sbjct: 51 --CYTCGQEGHLSSACPQGSGAGGFGGASGGGECYRCGKPGHIARMCPESGDAAAGGFGG 108
Query: 210 ----GGNGGGGGPGSASCFRCGGIGHMARDCATAKGPSSGGVGGG-----GCFRCGEVGH 260
GG GGG G G+ SC+ CGG+GH++R+C + GG GGG C+ CG+ GH
Sbjct: 109 AGGYGGFGGGAGFGNKSCYTCGGVGHISRECPSGASRGFGGGGGGFGGPRKCYNCGQDGH 168
Query: 261 LARDCDGGVAVSGGGGNAGRNTCFNCGKPGHFAREC 296
++R+C TC++CG+PGH A C
Sbjct: 169 ISRECP----------QEQGKTCYSCGQPGHIASAC 194
Score = 146 bits (368), Expect = 8e-34
Identities = 73/191 (38%), Positives = 97/191 (50%), Gaps = 35/191 (18%)
Query: 131 GGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGG 190
G G++C+ CG GH+A C CYNCG +GHL+R+C + N
Sbjct: 3 GAPRGSSCFKCGQQGHVAAACPAE-------APTCYNCGLSGHLSRECPQPKNK------ 49
Query: 191 GGACYTCGGFGHLARDCMRGGNGGG--GGPGSASCFRCGGIGHMARDCATAKGPSSGGVG 248
ACYTCG GHL+ C +G GG G G C+RCG GH+AR C + ++GG G
Sbjct: 50 --ACYTCGQEGHLSSACPQGSGAGGFGGASGGGECYRCGKPGHIARMCPESGDAAAGGFG 107
Query: 249 GGG---------------CFRCGEVGHLARDCDGGVAVS---GGGGNAGRNTCFNCGKPG 290
G G C+ CG VGH++R+C G + GGGG G C+NCG+ G
Sbjct: 108 GAGGYGGFGGGAGFGNKSCYTCGGVGHISRECPSGASRGFGGGGGGFGGPRKCYNCGQDG 167
Query: 291 HFARECIEASG 301
H +REC + G
Sbjct: 168 HISRECPQEQG 178
Score = 145 bits (367), Expect = 1e-33
Identities = 81/211 (38%), Positives = 108/211 (50%), Gaps = 40/211 (18%)
Query: 85 APRGFGGWRGGERRNGGGG-GGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGD 143
APRG ++ G++ + CYNCG +GHL+R+C + N ACY CG
Sbjct: 4 APRGSSCFKCGQQGHVAAACPAEAPTCYNCGLSGHLSRECPQPKNK-------ACYTCGQ 56
Query: 144 AGHLARDCNRSNNNSGGGGAG----CYNCGDTGHLARDCNRSNNS-----GGGGG----G 190
GHL+ C + + G GGA CY CG GH+AR C S ++ GG GG G
Sbjct: 57 EGHLSSACPQGSGAGGFGGASGGGECYRCGKPGHIARMCPESGDAAAGGFGGAGGYGGFG 116
Query: 191 GGA------CYTCGGFGHLARDCMRG-----GNGGGGGPGSASCFRCGGIGHMARDCATA 239
GGA CYTCGG GH++R+C G G GGGG G C+ CG GH++R+C
Sbjct: 117 GGAGFGNKSCYTCGGVGHISRECPSGASRGFGGGGGGFGGPRKCYNCGQDGHISRECPQE 176
Query: 240 KGPSSGGVGGGGCFRCGEVGHLARDCDGGVA 270
+G + C+ CG+ GH+A C G A
Sbjct: 177 QGKT--------CYSCGQPGHIASACPGAGA 199
Score = 102 bits (254), Expect = 1e-20
Identities = 61/172 (35%), Positives = 77/172 (44%), Gaps = 43/172 (25%)
Query: 63 KTKAVDVTGPNGAALQPTRKDSAPRGFGGWRGGERRNGGGGGGGGGGCYNCGDTGHLARD 122
K KA G G + S GF GG GGG CY CG GH+AR
Sbjct: 47 KNKACYTCGQEGHLSSACPQGSGAGGF------------GGASGGGECYRCGKPGHIARM 94
Query: 123 CHRSNN-----------NGGGGGGA-----ACYNCGDAGHLARDC-NRSNNNSGGGGAG- 164
C S + GG GGGA +CY CG GH++R+C + ++ GGGG G
Sbjct: 95 CPESGDAAAGGFGGAGGYGGFGGGAGFGNKSCYTCGGVGHISRECPSGASRGFGGGGGGF 154
Query: 165 -----CYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGGFGHLARDCMRGG 211
CYNCG GH++R+C + G CY+CG GH+A C G
Sbjct: 155 GGPRKCYNCGQDGHISRECPQEQ--------GKTCYSCGQPGHIASACPGAG 198
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.144 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 724,106,684
Number of Sequences: 2540612
Number of extensions: 45891078
Number of successful extensions: 813757
Number of sequences better than 10.0: 12476
Number of HSP's better than 10.0 without gapping: 4301
Number of HSP's successfully gapped in prelim test: 8532
Number of HSP's that attempted gapping in prelim test: 358933
Number of HSP's gapped (non-prelim): 101559
length of query: 301
length of database: 863,360,394
effective HSP length: 127
effective length of query: 174
effective length of database: 540,702,670
effective search space: 94082264580
effective search space used: 94082264580
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 75 (33.5 bits)
Lotus: description of TM0197.11