BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0162a.12
(34 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB07452.1| 10 kDa chaperonin gi|5921735|sp|Q96539|CH10_BRANA... 53 3e-06
gb|AAM63283.1| putative 10kd chaperonin [Arabidopsis thaliana] g... 52 6e-06
ref|NP_032329.1| heat shock protein 1 (chaperonin 10) [Mus muscu... 51 1e-05
gb|AAM63762.1| chaperonin CPN10 [Arabidopsis thaliana] gi|202589... 51 1e-05
gb|AAF79149.1| CPN10-like protein [Mus musculus] 51 1e-05
gb|AAB27570.1| chaperonin 10, cpn10 [Rattus norvegicus=rats, liv... 50 2e-05
emb|CAA50560.1| chaperonin 10 [Rattus norvegicus] gi|37231736|gb... 50 2e-05
ref|NP_999472.1| heat shock 10kD protein [Sus scrofa] gi|6270222... 50 2e-05
ref|XP_536017.1| PREDICTED: similar to heat shock 10kDa protein ... 50 2e-05
ref|XP_509315.1| PREDICTED: similar to heat shock 10kDa protein ... 50 2e-05
gb|AAT92186.1| heat shock protein 10 [Ixodes pacificus] 50 2e-05
gb|AAC96332.1| chaperonin 10-related protein [Homo sapiens] 50 2e-05
gb|AAH77653.1| Heat shock 10kDa protein 1 (chaperonin 10) [Xenop... 49 3e-05
gb|AAG00944.1| chaperonin 10 [Danio rerio] 49 3e-05
ref|NP_571601.1| heat shock 10kD protein 1 (chaperonin 10) [Dani... 49 3e-05
ref|NP_701513.1| 10 kd chaperonin, putative [Plasmodium falcipar... 49 4e-05
emb|CAE01413.1| mitochondrial co-chaperonin [Plasmodium falciparum] 49 4e-05
emb|CAH96358.1| 10 kd chaperonin, putative [Plasmodium berghei] 49 4e-05
gb|EAA22235.1| chaperonin, 10 kDa [Plasmodium yoelii yoelii] 49 4e-05
emb|CAG02594.1| unnamed protein product [Tetraodon nigroviridis] 49 5e-05
>gb|AAB07452.1| 10 kDa chaperonin gi|5921735|sp|Q96539|CH10_BRANA 10 KD
CHAPERONIN (PROTEIN CPN10) (PROTEIN GROES)
Length = 98
Score = 52.8 bits (125), Expect = 3e-06
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 1 GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
GD VLLP YGG+Q+KL +KE+ LFRDED+LG L
Sbjct: 63 GDTVLLPEYGGTQVKLGEKEYHLFRDEDVLGTL 95
>gb|AAM63283.1| putative 10kd chaperonin [Arabidopsis thaliana]
gi|26450019|dbj|BAC42130.1| putative 10kd chaperonin
[Arabidopsis thaliana] gi|28827420|gb|AAO50554.1|
putative 10kDa chaperonin (CPN10) protein [Arabidopsis
thaliana] gi|15220018|ref|NP_173723.1| 10 kDa
chaperonin, putative [Arabidopsis thaliana]
Length = 97
Score = 51.6 bits (122), Expect = 6e-06
Identities = 22/33 (66%), Positives = 28/33 (84%)
Query: 1 GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
GD VLLP +GG+Q+KL +KEFLL+RDEDI+ L
Sbjct: 63 GDNVLLPEFGGTQVKLGEKEFLLYRDEDIMATL 95
>ref|NP_032329.1| heat shock protein 1 (chaperonin 10) [Mus musculus]
gi|19353434|gb|AAH24385.1| Heat shock protein 1
(chaperonin 10) [Mus musculus]
gi|2493662|sp|Q64433|CH10_MOUSE 10 kDa heat shock
protein, mitochondrial (Hsp10) (10 kDa chaperonin)
(CPN10) gi|7682750|gb|AAF67345.1| chaperonin 10 [Mus
musculus] gi|26353058|dbj|BAC40159.1| unnamed protein
product [Mus musculus] gi|495206|gb|AAA62229.1|
chaperonin 10
Length = 102
Score = 50.8 bits (120), Expect = 1e-05
Identities = 21/31 (67%), Positives = 27/31 (86%)
Query: 1 GDQVLLPAYGGSQIKLDDKEFLLFRDEDILG 31
GD+VLLP YGG+++ LDDK++ LFRD DILG
Sbjct: 68 GDKVLLPEYGGTKVVLDDKDYFLFRDSDILG 98
>gb|AAM63762.1| chaperonin CPN10 [Arabidopsis thaliana]
gi|20258951|gb|AAM14191.1| putative chaperonin CPN10
protein [Arabidopsis thaliana]
gi|17380944|gb|AAL36284.1| putative chaperonin CPN10
protein [Arabidopsis thaliana]
gi|18394184|ref|NP_563961.1| 10 kDa chaperonin (CPN10)
[Arabidopsis thaliana] gi|6899643|gb|AAF31020.1| Strong
similarity to 10 KD chaperonin (protein CPN10) from
Arabidopsis thaliana gb|L02843 containing Chaperonins
subunit PF|00166. ESTs gb|Z29788, gb|AW004265 come
from this gene gi|2146744|pir||S65597 chaperonin groES
homolog - Arabidopsis thaliana
gi|11990458|dbj|BAA13588.2| mitochondrial chaperonin 10
[Arabidopsis thaliana] gi|461729|sp|P34893|CH10_ARATH
10 kDa chaperonin (Protein CPN10) (Protein groES)
gi|166662|gb|AAA32767.1| 10 kDa chaperonin
Length = 98
Score = 50.8 bits (120), Expect = 1e-05
Identities = 22/33 (66%), Positives = 27/33 (81%)
Query: 1 GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
GD VLLP YGG+Q+KL + E+ LFRDED+LG L
Sbjct: 63 GDTVLLPEYGGTQVKLGENEYHLFRDEDVLGTL 95
>gb|AAF79149.1| CPN10-like protein [Mus musculus]
Length = 102
Score = 50.8 bits (120), Expect = 1e-05
Identities = 21/31 (67%), Positives = 27/31 (86%)
Query: 1 GDQVLLPAYGGSQIKLDDKEFLLFRDEDILG 31
GD+VLLP YGG+++ LDDK++ LFRD DILG
Sbjct: 68 GDKVLLPEYGGTKVVLDDKDYFLFRDSDILG 98
>gb|AAB27570.1| chaperonin 10, cpn10 [Rattus norvegicus=rats, liver, Peptide
Mitochondrial, 101 aa]
Length = 101
Score = 50.1 bits (118), Expect = 2e-05
Identities = 21/31 (67%), Positives = 27/31 (86%)
Query: 1 GDQVLLPAYGGSQIKLDDKEFLLFRDEDILG 31
GD+VLLP YGG+++ LDDK++ LFRD DILG
Sbjct: 67 GDKVLLPEYGGTKVVLDDKDYFLFRDGDILG 97
>emb|CAA50560.1| chaperonin 10 [Rattus norvegicus] gi|37231736|gb|AAH58492.1| Heat
shock 10 kDa protein 1 [Rattus norvegicus]
gi|461731|sp|P26772|CH10_RAT 10 kDa heat shock protein,
mitochondrial (Hsp10) (10 kDa chaperonin) (CPN10)
Length = 102
Score = 50.1 bits (118), Expect = 2e-05
Identities = 21/31 (67%), Positives = 27/31 (86%)
Query: 1 GDQVLLPAYGGSQIKLDDKEFLLFRDEDILG 31
GD+VLLP YGG+++ LDDK++ LFRD DILG
Sbjct: 68 GDKVLLPEYGGTKVVLDDKDYFLFRDGDILG 98
>ref|NP_999472.1| heat shock 10kD protein [Sus scrofa] gi|62702220|gb|AAX93146.1|
unknown [Homo sapiens] gi|30525868|gb|AAP32465.1| heat
shock 10kD protein [Sus scrofa]
gi|509781|emb|CAA53455.1| heat shock protein 10 [Homo
sapiens] gi|1167|emb|CAA49288.1| cpn10 protein [Bos
taurus] gi|6996446|emb|CAB75425.1| chaperonin 10, Hsp10
protein [Homo sapiens] gi|23270723|gb|AAH23518.1| Heat
shock 10kDa protein 1 (chaperonin 10) [Homo sapiens]
gi|47606335|sp|P61604|CH10_HUMAN 10 kDa heat shock
protein, mitochondrial (Hsp10) (10 kDa chaperonin)
(CPN10) (Early-pregnancy factor) (EPF)
gi|1083037|pir||A56682 heat shock protein 10,
mitochondrial - bovine gi|47606334|sp|P61603|CH10_BOVIN
10 kDa heat shock protein, mitochondrial (Hsp10) (10
kDa chaperonin) (CPN10) gi|469171|gb|AAA50953.1|
chaperonin 10 gi|47115313|emb|CAG28616.1| HSPE1 [Homo
sapiens] gi|27805927|ref|NP_776771.1| heat shock 10kDa
protein 1 (chaperonin 10) [Bos taurus]
gi|1090519|prf||2019248A chaperonin 10
gi|4504523|ref|NP_002148.1| heat shock 10kDa protein 1
(chaperonin 10) [Homo sapiens]
Length = 102
Score = 50.1 bits (118), Expect = 2e-05
Identities = 21/31 (67%), Positives = 27/31 (86%)
Query: 1 GDQVLLPAYGGSQIKLDDKEFLLFRDEDILG 31
GD+VLLP YGG+++ LDDK++ LFRD DILG
Sbjct: 68 GDKVLLPEYGGTKVVLDDKDYFLFRDGDILG 98
>ref|XP_536017.1| PREDICTED: similar to heat shock 10kDa protein 1 (chaperonin 10)
[Canis familiaris]
Length = 204
Score = 50.1 bits (118), Expect = 2e-05
Identities = 21/31 (67%), Positives = 27/31 (86%)
Query: 1 GDQVLLPAYGGSQIKLDDKEFLLFRDEDILG 31
GD+VLLP YGG+++ LDDK++ LFRD DILG
Sbjct: 170 GDKVLLPEYGGTKVVLDDKDYFLFRDGDILG 200
>ref|XP_509315.1| PREDICTED: similar to heat shock 10kDa protein 1 (chaperonin 10);
heat shock 10kD protein 1 (chaperonin 10) [Pan
troglodytes]
Length = 102
Score = 50.1 bits (118), Expect = 2e-05
Identities = 21/31 (67%), Positives = 27/31 (86%)
Query: 1 GDQVLLPAYGGSQIKLDDKEFLLFRDEDILG 31
GD+VLLP YGG+++ LDDK++ LFRD DILG
Sbjct: 68 GDKVLLPEYGGTKVVLDDKDYFLFRDGDILG 98
>gb|AAT92186.1| heat shock protein 10 [Ixodes pacificus]
Length = 101
Score = 50.1 bits (118), Expect = 2e-05
Identities = 19/31 (61%), Positives = 28/31 (90%)
Query: 1 GDQVLLPAYGGSQIKLDDKEFLLFRDEDILG 31
GD+VLLP YGG+++++D+KEF +FRD D+LG
Sbjct: 67 GDKVLLPEYGGTKVEIDNKEFYIFRDSDVLG 97
>gb|AAC96332.1| chaperonin 10-related protein [Homo sapiens]
Length = 97
Score = 50.1 bits (118), Expect = 2e-05
Identities = 21/31 (67%), Positives = 27/31 (86%)
Query: 1 GDQVLLPAYGGSQIKLDDKEFLLFRDEDILG 31
GD+VLLP YGG+++ LDDK++ LFRD DILG
Sbjct: 67 GDKVLLPEYGGTKVVLDDKDYFLFRDGDILG 97
>gb|AAH77653.1| Heat shock 10kDa protein 1 (chaperonin 10) [Xenopus tropicalis]
gi|55742136|ref|NP_001006882.1| heat shock 10kDa
protein 1 (chaperonin 10) [Xenopus tropicalis]
Length = 102
Score = 49.3 bits (116), Expect = 3e-05
Identities = 20/31 (64%), Positives = 27/31 (86%)
Query: 1 GDQVLLPAYGGSQIKLDDKEFLLFRDEDILG 31
G+++LLP YGG+++ LDDKE+ LFRD DILG
Sbjct: 68 GEKILLPEYGGTKVVLDDKEYFLFRDGDILG 98
>gb|AAG00944.1| chaperonin 10 [Danio rerio]
Length = 91
Score = 49.3 bits (116), Expect = 3e-05
Identities = 20/31 (64%), Positives = 27/31 (86%)
Query: 1 GDQVLLPAYGGSQIKLDDKEFLLFRDEDILG 31
GD+VLLP YGG+++ L+DK++ LFRD DILG
Sbjct: 58 GDKVLLPEYGGTKVMLEDKDYFLFRDADILG 88
>ref|NP_571601.1| heat shock 10kD protein 1 (chaperonin 10) [Danio rerio]
gi|47938870|gb|AAH71419.1| Heat shock 10kD protein 1
(chaperonin 10) [Danio rerio]
Length = 100
Score = 49.3 bits (116), Expect = 3e-05
Identities = 20/31 (64%), Positives = 27/31 (86%)
Query: 1 GDQVLLPAYGGSQIKLDDKEFLLFRDEDILG 31
GD+VLLP YGG+++ L+DK++ LFRD DILG
Sbjct: 66 GDKVLLPEYGGTKVMLEDKDYFLFRDADILG 96
>ref|NP_701513.1| 10 kd chaperonin, putative [Plasmodium falciparum 3D7]
gi|23496681|gb|AAN36237.1| 10 kd chaperonin, putative
[Plasmodium falciparum 3D7]
Length = 91
Score = 48.9 bits (115), Expect = 4e-05
Identities = 19/33 (57%), Positives = 28/33 (84%)
Query: 1 GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
GD V+LP YGGS +K+D +EF ++RD+DI+GI+
Sbjct: 56 GDVVVLPEYGGSSLKIDGEEFFVYRDDDIIGII 88
>emb|CAE01413.1| mitochondrial co-chaperonin [Plasmodium falciparum]
Length = 103
Score = 48.9 bits (115), Expect = 4e-05
Identities = 19/33 (57%), Positives = 28/33 (84%)
Query: 1 GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
GD V+LP YGGS +K+D +EF ++RD+DI+GI+
Sbjct: 68 GDVVVLPEYGGSSLKIDGEEFFVYRDDDIIGII 100
>emb|CAH96358.1| 10 kd chaperonin, putative [Plasmodium berghei]
Length = 91
Score = 48.9 bits (115), Expect = 4e-05
Identities = 19/33 (57%), Positives = 28/33 (84%)
Query: 1 GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
GD V+LP YGGS +K+D +EF ++RD+DI+GI+
Sbjct: 56 GDVVVLPEYGGSSLKIDGEEFFVYRDDDIIGII 88
>gb|EAA22235.1| chaperonin, 10 kDa [Plasmodium yoelii yoelii]
Length = 117
Score = 48.9 bits (115), Expect = 4e-05
Identities = 19/33 (57%), Positives = 28/33 (84%)
Query: 1 GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
GD V+LP YGGS +K+D +EF ++RD+DI+GI+
Sbjct: 82 GDVVVLPEYGGSSLKIDGEEFFVYRDDDIIGII 114
>emb|CAG02594.1| unnamed protein product [Tetraodon nigroviridis]
Length = 141
Score = 48.5 bits (114), Expect = 5e-05
Identities = 20/31 (64%), Positives = 27/31 (86%)
Query: 1 GDQVLLPAYGGSQIKLDDKEFLLFRDEDILG 31
G++VLLP YGG+++ LDDK++ LFRD DILG
Sbjct: 107 GEKVLLPEYGGTKVVLDDKDYFLFRDGDILG 137
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.154 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,880,155
Number of Sequences: 2540612
Number of extensions: 1260182
Number of successful extensions: 2193
Number of sequences better than 10.0: 375
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1816
Number of HSP's gapped (non-prelim): 376
length of query: 34
length of database: 863,360,394
effective HSP length: 10
effective length of query: 24
effective length of database: 837,954,274
effective search space: 20110902576
effective search space used: 20110902576
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)
Lotus: description of TM0162a.12