BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0129.4
(1259 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 692 0.0
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 640 0.0
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 615 e-174
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 601 e-170
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 585 e-165
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 578 e-163
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 577 e-163
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 575 e-162
gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (jap... 565 e-159
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 563 e-158
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 558 e-157
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 558 e-157
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 553 e-155
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 545 e-153
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 534 e-150
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 533 e-149
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 521 e-146
ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cu... 507 e-141
gb|AAX95232.1| retrotransposon protein, putative, unclassified [... 500 e-139
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 497 e-139
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 692 bits (1786), Expect = 0.0
Identities = 434/1290 (33%), Positives = 649/1290 (49%), Gaps = 52/1290 (4%)
Query: 4 VYGFPDDRNKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVATCA 63
VYG P +H W L+RR PWLC GDFN++L + LG MQ
Sbjct: 110 VYGEPKRELRHFFWNLLRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQHFRSC 169
Query: 64 CSDCALHVVDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHCSDH 123
DC L + F G +FTW+N + + RLD A+ N + + V +V SDH
Sbjct: 170 LDDCGLIDLGFVGPKFTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCLVENVITTSSDH 229
Query: 124 SPILLMCADRRKRKQSKR----EYMFRFEELWLQKNEECKEVIAETWGRS------LTEV 173
I + D +R +R + FRFE WL+ E+ +EV+ +W S L V
Sbjct: 230 YAISI---DLSRRNHGQRRIPIQQGFRFEAAWLRA-EDYREVVENSWRISSAGCVGLRGV 285
Query: 174 PDRLSDVSGLLGRWGKEQFGDLPRKISDGQALLQELQRKDQTKEVLMAINVAERDLDSLL 233
L V+ L W K FG + RKI + L+ L++ V+ + E+ L L
Sbjct: 286 WSVLQQVAVSLKDWSKASFGSVRRKILKMERKLKSLRQSPVNDVVIQEEKLIEQQLCELF 345
Query: 234 EQEEVWWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVL 293
E+EE+ +QRSR WL+ GD+NT FFH +A+ RR+ N I+ L D+G I R+
Sbjct: 346 EKEEIMARQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMA 405
Query: 294 GDYFGGLFTSSNPEGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPGLD 353
++ LF+S + +EE + + +V + LG+ +T EE++ ALFQM TKAPG D
Sbjct: 406 EVFYENLFSSEPCDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPD 465
Query: 354 GFPTLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISL 413
GFP LFYQ +W I+ + + L G P + +++VLIPK+ H ++FRPISL
Sbjct: 466 GFPALFYQTHWGILEEHICNAVRGFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISL 525
Query: 414 CNVLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGRNG 473
CNVL+KI +K +ANRLK LPDI+ + QSAFVPGRLI D+ALV YEC H ++K+ +N
Sbjct: 526 CNVLYKIASKVLANRLKPFLPDIVSEFQSAFVPGRLITDSALVAYECLHTIRKQ-HNKNP 584
Query: 474 MMTLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVLLL 533
LK+DM KAYDRVEW++L G L K+GF W++ +M C++ + V +
Sbjct: 585 FFALKIDMMKAYDRVEWAYLSGCLSKLGFSQDWINTVMR---------CVSSVRYAVKIN 635
Query: 534 LEAYVRVILFR----------LIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLL 583
E V+ R +FL E S LL + L GIK P ISHLL
Sbjct: 636 GELTKPVVPSRGIRQGDPISPYLFLLCTEGLSCLLHKKEVAGELQGIKNGRHGPPISHLL 695
Query: 584 FADDSIIFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLN 643
FADDSI FA+A+++ + + N L +Y ASGQ INL KS + + P +K L
Sbjct: 696 FADDSIFFAKADSRNVQALKNTLRSYCSASGQKINLHKSSIFFGKRCPDAVKISVKSCLQ 755
Query: 644 VNAVESFDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAI 703
V+ D YLG+PT IG T F F+ +R+WK++ GW + LSRAG E ++K+V QAI
Sbjct: 756 VDNEVLQDSYLGMPTEIGLATTNFFKFLPERIWKRVNGWTDRPLSRAGMETMLKAVAQAI 815
Query: 704 PSYVMSCFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKS 763
P+YVMSCF +P S+C ++ ++ +WG + K+ + W SW L+ KF GG+GFR+F +
Sbjct: 816 PNYVMSCFRIPVSICEKMKTCIADHWWGFEDGKKKMHWKSWSWLSTPKFLGGMGFREFTT 875
Query: 764 FNIALVAKNWWRIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIFQE 823
FN A++ + WR+ T P++L ++V KG YF A + PS+ W S+L + +
Sbjct: 876 FNQAMLGRQCWRLLTDPDSLCSRVLKGRYFPNSSFWEAAQPKSPSFTWRSLLFGRELLAK 935
Query: 824 GGRWKIGDGSQVDILHDQWLPQGVPVIGSQDLMAEFGV-SKVSHLIDHAAKSWKYALVDF 882
G RW +GDG + I D W+P P + + ++ F + VS L++ A+ W L+
Sbjct: 936 GVRWGVGDGKTIKIFSDNWIPGFRPQLVT--TLSPFPTDATVSCLMNEDARCWDGDLIRS 993
Query: 883 IFHPATVSHILKIHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSSTYSQPSL 942
+F IL+I + +G D WP G Y +S Y R A S +
Sbjct: 994 LFPVDIAKEILQIPISRHGDADFASWPHDKLGLYSVRSAYNLARSEAFFADQSNSGRGMA 1053
Query: 943 PAPL-----WKKFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCANEEET 997
L WK W+ +A + K WR L L RR + C C N ++T
Sbjct: 1054 SRLLESQKDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFC-NRDDT 1112
Query: 998 VFHLFVSCPVAQNFW----FGSPLSLRVHGFSSMEDFLADFFRAADDDALALWQAGVYAL 1053
V H+F+ CP A W + L +GFS+M ++ DF + A L + +
Sbjct: 1113 VEHVFLFCPFAAQIWEEIKGKCAVKLGRNGFSTMRQWIFDFLKRGSSHANTLLAVTFWHI 1172
Query: 1054 WEMRNRVVFRDGEIPVPVAAMIQRCSML-AAAPVSEMTVVPRPAPLLQA--TWARPPYGI 1110
WE RN +G + P +I+ S + + TV + QA W PP +
Sbjct: 1173 WEARNNTKNNNGTVH-PQRVVIKILSYVDMILKHNTKTVDGQRGGNTQAIPRWQPPPASV 1231
Query: 1111 YKLNFDAAV-ATTGEVGFGLIVRNMLGEVLASAAQYLLHAASAILGEALVFRWSMQLTIQ 1169
+ +N DAA+ +++ +G G ++R+ G+ L + ++ + L EAL R ++ L +
Sbjct: 1232 WMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVVLPELAEALAIRRALGLAKE 1291
Query: 1170 MEFRRVLFETDCLQLFQLWKKPPDGRSYLSSIVGDCFMLSRFFDYVDLSFVRRRGNSVAD 1229
++ +DCL + + + RS + ++ D L+ F V R N A
Sbjct: 1292 EGLEHIVMASDCLTVIRRIQTSGRDRSGVGCVIEDIKKLASTFVLCSFMHVNRLSNLAAH 1351
Query: 1230 FLAGTASKYTDMVWLEEVPREVITLIHKDV 1259
LA A T V+ +P + ++ DV
Sbjct: 1352 SLARNAELSTCTVYRSVIPDYIRDILCDDV 1381
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 640 bits (1652), Expect = 0.0
Identities = 407/1271 (32%), Positives = 651/1271 (51%), Gaps = 78/1271 (6%)
Query: 4 VYGFPDDRNKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVATCA 63
+YG P + W + R PW+ GDFN+++ P++K+GG
Sbjct: 104 IYGEPVQAERGELWERLTRLGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQM 163
Query: 64 CSDCALHVVDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHCSDH 123
+ C L V+ +G +F+W NR V+ RLD + N AW L+P K ++ + CSDH
Sbjct: 164 LNSCGLWEVNHSGYQFSWYGNR-NDELVQCRLDRTVANQAWMELFPQAKATYLQKICSDH 222
Query: 124 SPILLMCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSLTE----VPDRLSD 179
SP++ RK + F++++ W+Q+ E K+++ W + T+ + ++++
Sbjct: 223 SPLINNLVGDNWRKWAG----FKYDKRWVQR-EGFKDLLCNFWSQQSTKTNALMMEKIAS 277
Query: 180 VSGLLGRWGKEQFGDLPRKISDGQAL--LQELQRK--DQTKEVLM---AINVAERDLDSL 232
+ +W +++S + +QELQ K TK++ + +++L
Sbjct: 278 CRREISKW---------KRVSKPSSAVRIQELQFKLDAATKQIPFDRRELARLKKELSQE 328
Query: 233 LEQEEVWWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARV 292
EE +W+++SR W+++GD+NT++FH RR +N I+ L D+ GRE D D+ RV
Sbjct: 329 YNNEEQFWQEKSRIMWMRNGDRNTKYFHAATKNRRAQNRIQKLIDEEGREWTSDEDLGRV 388
Query: 293 LGDYFGGLFTSSNP----EGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTK 348
YF LF S + E +E T LV+ +++ L P T+EEV+ A F ++P K
Sbjct: 389 AEAYFKKLFASEDVGYTVEELENLTPLVSDQMNNNLLA----PITKEEVQRATFSINPHK 444
Query: 349 APGLDGFPTLFYQKYWDIIGDDVSAFCLQVLQ-GVIPPGMINQTLLVLIPKIMKPEHATQ 407
PG DG YQ++W+ +GD ++ + G I GM N+T + LIPKI+K E T
Sbjct: 445 CPGPDGMNGFLYQQFWETMGDQITEMVQAFFRSGSIEEGM-NKTNICLIPKILKAEKMTD 503
Query: 408 FRPISLCNVLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKR 467
FRPISLCNV++K+I K +ANRLK ILP +I +TQ+AFV GRLI DN L+ +E H +
Sbjct: 504 FRPISLCNVIYKVIGKLMANRLKKILPSLISETQAAFVKGRLISDNILIAHELLHALSSN 563
Query: 468 ISGRNGMMTLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTE-- 525
+ +K D+SKAYDRVEW FL+ ++ +GF W+ LIM + + + +
Sbjct: 564 NKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGFADHWIRLIMECVKSVRYQVLINGTP 623
Query: 526 ----IPSRVLLLLEAYVRVILFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISH 581
IPSR L + L +F+ E ++L + + G+KVA AP ISH
Sbjct: 624 HGEIIPSRGLRQGDP-----LSPYLFVICTEMLVKMLQSAEQKNQITGLKVARGAPPISH 678
Query: 582 LLFADDSIIFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQL 641
LLFADDS+ + + N + ++ I+ Y ASGQ +N KS + +++ + +K+
Sbjct: 679 LLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLKSSIYFGKHISEERRCLVKRK 738
Query: 642 LNVNAVESFDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQ 701
L + YLGLP K +++KDR+ KK+ GW+ + LS G+E+L+K+V
Sbjct: 739 LGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLGWQSNFLSPGGKEILLKAVAM 798
Query: 702 AIPSYVMSCFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDF 761
A+P+Y MSCF +P ++C IE +++ F+W + RGL W +W L+R K GGLGF++
Sbjct: 799 ALPTYTMSCFKIPKTICQQIESVMAEFWWKNKKEGRGLHWKAWCHLSRPKAVGGLGFKEI 858
Query: 762 KSFNIALVAKNWWRIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIF 821
++FNIAL+ K WR+ T+ ++L+A+VFK YF++ D L A G RPS+AW SI ++ +
Sbjct: 859 EAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSDPLNAPLGSRPSFAWKSIYEAQVLI 918
Query: 822 QEGGRWKIGDGSQVDILHDQWL----PQGVPVIGSQDLMAEFGVSK---VSHLIDHAAKS 874
++G R IG+G +++ D W+ + + L++++ + V L+ +
Sbjct: 919 KQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQYAANSIHVVKDLLLPDGRD 978
Query: 875 WKYALVDFIFHPATVSHILKIHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACS 934
W + LV +F T +IL + + D W + G+Y KSGY +V + +
Sbjct: 979 WNWNLVSLLFPDNTQENILALRPGGKETRDRFTWEYSRSGHYSVKSGY-WVMTEIINQRN 1037
Query: 935 STYS--QPSLPAPLWKKFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCA 992
+ QPSL P++++ W+ P+ WR V++ L + + L R + + C C
Sbjct: 1038 NPQEVLQPSLD-PIFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLAREKSCVRCP 1096
Query: 993 NEEETVFHLFVSCPVAQNFWFGSPLSLRVHG------FSSMEDFLA---DFFRAADDDAL 1043
+ ETV HL CP A+ W SPL G F +M L+ +D AL
Sbjct: 1097 SHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESLFRNMHHVLSVHKSQPEESDHHAL 1156
Query: 1044 ALWQAGVYALWEMRNRVVFRDGEIPVPVAAMIQRCSMLA----AAPVSEMTVVPRPAPLL 1099
W ++ LW+ RN +VF+ E P + M A P ++T R +
Sbjct: 1157 IPWI--LWRLWKNRNDLVFKGREFTAPQVILKATEDMDAWNNRKEPQPQVTSSTRDRCV- 1213
Query: 1100 QATWARPPYGIYKLNFDAAVA-TTGEVGFGLIVRNMLGEVLASAAQYLLHAASAILGEAL 1158
W P +G K N D A + G G G ++RN G +L + L S + E
Sbjct: 1214 --KWQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLLWLGLRALPSQQSVLETEVE 1271
Query: 1159 VFRWSMQLTIQMEFRRVLFETDCLQLFQLWKKPPDGRSYLSSIVGDCFMLSRFFDYVDLS 1218
RW++ + +RRV+FE+D L L + D S L+ + D L R F+ V
Sbjct: 1272 ALRWAVLSLSRFNYRRVIFESDSQYLVSLIQNEMDIPS-LAPRIQDIRNLLRHFEEVKFQ 1330
Query: 1219 FVRRRGNSVAD 1229
F RR GN+VAD
Sbjct: 1331 FTRREGNNVAD 1341
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 615 bits (1585), Expect = e-174
Identities = 390/1244 (31%), Positives = 603/1244 (48%), Gaps = 63/1244 (5%)
Query: 1 VLAVYGFPDDRNKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVA 60
V VYG P N+HR W L+R +PW IGDFN+ + + +MQ
Sbjct: 832 VTFVYGEPRVENRHRMWSLLRTIHQSSSLPWAVIGDFNETMWQFEHFSRTPRGEPQMQDF 891
Query: 61 TCACSDCALHVVDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHC 120
DC LH + F G T+ N R V+ RLD + +D W ++ + +V H+ C
Sbjct: 892 RDVLQDCELHDLGFKGVPHTYDNKREGWRNVKVRLDRVVADDKWRDIYSTAQVVHLVSPC 951
Query: 121 SDHSPILLMCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETW-----GRSLTEVPD 175
SDH PILL K R+ +E +W ++ E +VI E W L ++
Sbjct: 952 SDHCPILLNLVV--KDPHQLRQKCLHYEIVW-EREPEATQVIEEAWVVAGEKADLGDINK 1008
Query: 176 RLSDVSGLLGRWGKEQFGDLPRKISDGQALLQELQRKDQTKEVLMAINVAERDLDSLLEQ 235
L+ V L W + + ++ R++ + L EL + + V I A ++ LL +
Sbjct: 1009 ALAKVMTALRSWSRAKVKNVGRELEKARKKLAELIESNADRTV---IRNATDHMNELLYR 1065
Query: 236 EEVWWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVLGD 295
EE+ W QRSR +WLK D+NT+FFH +A R K+N I L+D N + + +
Sbjct: 1066 EEMLWLQRSRVNWLKDEDRNTKFFHSRAVWRAKKNKISKLRDANETVHSSTMKLESMATE 1125
Query: 296 YFGGLFTSSNPEGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPGLDGF 355
YF ++T+ E T L+ +V++ L E FT +E+ +A+FQ+ P K+PG DGF
Sbjct: 1126 YFQDVYTADPNLNPETVTRLIQEKVTDIMNEKLCEDFTEDEISQAIFQIGPLKSPGPDGF 1185
Query: 356 PTLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISLCN 415
P FYQ+ W I D+ + Q + P +N T +VLIPK +P FRPISLCN
Sbjct: 1186 PARFYQRNWGTIKADIIGAVRRFFQTGLMPEGVNDTAIVLIPKKEQPVDLRDFRPISLCN 1245
Query: 416 VLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGRNGMM 475
V++K+++K + NRL+ IL D++ QSAFV GR+I DNAL+ +ECFH M+K +
Sbjct: 1246 VVYKVVSKCLVNRLRPILDDLVSVEQSAFVQGRMITDNALLAFECFHAMQKNKKANHAAC 1305
Query: 476 TLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVLL--- 532
KLD+SKAYDRV+W FL+ + K+GF WV+ IM C+T + V
Sbjct: 1306 AYKLDLSKAYDRVDWRFLEMAMNKLGFARRWVNWIMK---------CVTSVRYMVKFNGT 1356
Query: 533 LLEAYVRV-------ILFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFA 585
LL+++ L +FL + S LL V L KV AP ISHLLFA
Sbjct: 1357 LLQSFAPTRGLRQGDPLLPFLFLFVADGLSLLLKEKVAQNSLTPFKVCRAAPGISHLLFA 1416
Query: 586 DDSIIFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNVN 645
DD+++F +A+ +EAE V +LS+Y +GQ+IN K + + + ++L V
Sbjct: 1417 DDTLLFFKAHQREAEVVKEVLSSYAMGTGQLINPAKCSILMGGASTPAVSEAISEILQVE 1476
Query: 646 AVESFDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIPS 705
D+YLG PT G+ F ++ ++WK++ W E+ LS G+EVLIK+V+QAIP
Sbjct: 1477 RDRFEDRYLGFPTPEGRMHKGRFQSLQAKIWKRVIQWGENHLSTGGKEVLIKAVIQAIPV 1536
Query: 706 YVMSCFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSFN 765
YVM F LP+S+ D+ ++ F+W +R W +W LT+ K GGLGFRD++ FN
Sbjct: 1537 YVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDYRLFN 1596
Query: 766 IALVAKNWWRIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIFQEGG 825
AL+A+ WR+ T P++L A+V K YF G L+ G S AW SI + ++G
Sbjct: 1597 QALLARQAWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEYGLDLLKKGI 1656
Query: 826 RWKIGDGSQVDILHDQWLPQG---VPVIGSQDLMAEFGVSKVSHLIDHAAKSWKYALVDF 882
W++G+G+ + I D WLP+ P+ G + ++ VS LI SW +
Sbjct: 1657 IWRVGNGNSIRIWRDSWLPRDHSRRPITGKANCRLKW----VSDLITEDG-SWDVPKIHQ 1711
Query: 883 IFHPATVSHILKIHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSSTYSQPSL 942
FH IL I + D + W +G + +S Y + + S+ S +
Sbjct: 1712 YFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQ-LVNIEESSSSGTNN 1770
Query: 943 PAPLWKKFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCANEEETVFHLF 1002
W+ W+ + K AWRV S+ L +R ++ +C +C E E H
Sbjct: 1771 INKAWEMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLEQSDMCQICDRENEDDAHAL 1830
Query: 1003 VSCPVAQNFWF----GSPLSLRVHGFSSMEDFLADFFRAADDDALALWQAGVYALWEMRN 1058
C A W +S+ + +L D + A++ ++ W +RN
Sbjct: 1831 CRCIQASQLWSCMHKSGSVSVDIKASVLGRFWLFDCLEKIPEYEQAMFLMTLWRNWYVRN 1890
Query: 1059 RVVFRDGEIPVP-----VAAMIQRCSMLAAAPVSEMTV---VPRPAPLL----------- 1099
++ P + + + + AP +++ V R PL
Sbjct: 1891 ELIHGKSAPPTETSQRFIQSYVDLLFQIRQAPQADLVKGKHVVRTVPLKGGPKYRVLNNH 1950
Query: 1100 QATWARPPYGIYKLNFDAAV-ATTGEVGFGLIVRNMLGEVLASAAQYLLHAASAILGEAL 1158
Q W RP G KLN D + A++G+ G G+I+RN G+++ ++ + L + + E
Sbjct: 1951 QPCWERPKDGWMKLNVDGSFDASSGKGGLGMILRNSAGDIIFTSCKPLERCNNPLESELR 2010
Query: 1159 VFRWSMQLTIQMEFRRVLFETDCLQLFQLWKKPPDGRSYLSSIV 1202
++L I + ETDC + QL + S L++I+
Sbjct: 2011 ACVEGLKLAIHWTLLPIQVETDCASVVQLLQGIGRDFSVLANII 2054
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 601 bits (1550), Expect = e-170
Identities = 387/1280 (30%), Positives = 618/1280 (48%), Gaps = 79/1280 (6%)
Query: 4 VYGFPDDRNKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVATCA 63
+YG P +H W ++R PW+ GDFN+IL+ +K GG +G +Q T
Sbjct: 466 IYGHPIPSERHHLWEKLQRVSAHRSGPWMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNM 525
Query: 64 CSDCALHVVDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHCSDH 123
+ C + + G ++W R T+E LD +N W++ +P+ + + SDH
Sbjct: 526 INCCNMKDLKSKGNPYSWVGKRQNE-TIESCLDRVFINSDWQASFPAFETEFLPIAGSDH 584
Query: 124 SPILL-----MCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSLTEVP---- 174
+P+++ +C R + + +R + F E+ + + W R ++
Sbjct: 585 APVIIDIAEEVCTKRGQFRYDRRHFQF----------EDFVDSVQRGWNRGRSDSHGGYY 634
Query: 175 DRLSDVSGLLGRWGKEQFGDLPRKISDGQALLQELQRKDQTKEVLMAINVAERDLDSLLE 234
++L L +W + + KI + + +R D T + + + DL+
Sbjct: 635 EKLHCCRQELAKWKRRTKTNTAEKIETLKYRVDAAER-DHTLPHQTILRLRQ-DLNQAYR 692
Query: 235 QEEVWWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVLG 294
EE++W +SR W+ GD+NT FF+ R+ RN I+ + D G E D I +V
Sbjct: 693 DEELYWHLKSRNRWMLLGDRNTMFFYASTKLRKSRNRIKAITDAQGIENFRDDTIGKVAE 752
Query: 295 DYFGGLFTSSNPEGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPGLDG 354
+YF LFT++ EE + +A +V+E L + T +EV +A+F + +APG DG
Sbjct: 753 NYFADLFTTTQTSDWEEIISGIAPKVTEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDG 812
Query: 355 FPTLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISLC 414
F FY WD+IG+DV + + INQT + LIPKI+ P+H + +RPISLC
Sbjct: 813 FTAAFYHHLWDLIGNDVCLMVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISLC 872
Query: 415 NVLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGRNGM 474
+KII+K + RLK L D+I +Q+AFVPG+ I DN LV +E H +K R ++G
Sbjct: 873 TASYKIISKILIKRLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGY 932
Query: 475 MTLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVLLLL 534
+ +K D+SKAYDRVEW+FL+ V+ ++GF P WV IM+ C+T + VL+
Sbjct: 933 VAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWIMT---------CVTSVSYEVLING 983
Query: 535 EAYVRVI----------LFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLF 584
Y ++ L +FL E S +L ++ +HG+K+ ISHLLF
Sbjct: 984 SPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLF 1043
Query: 585 ADDSIIFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNV 644
ADDS+ F RA+ Q E + I YE ASGQ IN KS + + +P L +LL +
Sbjct: 1044 ADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGI 1103
Query: 645 NAVESFDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIP 704
+ V KYLGLP +G+ K +F ++ +V ++ +GW + LS AG+E++IK++ A+P
Sbjct: 1104 DNVRGGGKYLGLPEQLGRRKVELFEYIVTKVKERTEGWAYNYLSPAGKEIVIKAIAMALP 1163
Query: 705 SYVMSCFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSF 764
Y M+CF+LP +C +I +++ F+WG + +G LGF+D F
Sbjct: 1164 VYSMNCFLLPTLICNEINSLITAFWWG------------------KENEGDLGFKDLHQF 1205
Query: 765 NIALVAKNWWRIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIFQEG 824
N AL+AK WRI T P++LLA+++KG+Y+ L A +G SY W+SI + + Q+G
Sbjct: 1206 NRALLAKQAWRILTNPQSLLARLYKGLYYPNTTYLRANKGGHASYGWNSIQEGKLLLQQG 1265
Query: 825 GRWKIGDGSQVDILHDQWLPQGVPVIGSQDLMAEFGVSKVSHLIDHAAKSWKYALVDFIF 884
R ++GDG I D WLP P ++ E KV+ L + W + + +
Sbjct: 1266 LRVRLGDGQTTKIWEDPWLPTLPPRPARGPILDE--DMKVADLWRENKREWDPVIFEGVL 1323
Query: 885 HPATVSHILKIHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSSTYSQPSLPA 944
+P ++L + D+ W T + Y +SGY +V + +
Sbjct: 1324 NPEDQQLAKSLYLSNYAARDSYKWAYTRNTQYTVRSGY-WVATHVNLTEEEIINPLEGDV 1382
Query: 945 PLWKKFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCANEEETVFHLFVS 1004
PL ++ WR P+ K WR +S L L R + DP C C N +ET+ H+ +
Sbjct: 1383 PLKQEIWRLKITPKIKHFIWRCLSGALSTTTQLRNRNIPADPTCQRCCNADETINHIIFT 1442
Query: 1005 CPVAQNFWFGSPL--SLRVHGFSSMEDFLADFFRAADDDALALWQA-----GVYALWEMR 1057
C AQ W + S R+ ++E+ + + + L + ++ LW+ R
Sbjct: 1443 CSYAQVVWRSANFSGSNRLCFTDNLEENIRLILQGKKNQNLPILNGLMPFWIMWRLWKSR 1502
Query: 1058 NRVVFRD-GEIPVPVAAMIQR------CSMLAAAPVSEMTVVPRPAPLLQA-TWARPPYG 1109
N +F+ P VA ++ +M+ +S T PL ++ W+ PP G
Sbjct: 1503 NEYLFQQLDRFPWKVAQKAEQEATEWVETMVNDTAISHNTAQSNDRPLSRSKQWSSPPEG 1562
Query: 1110 IYKLNFDAA-VATTGEVGFGLIVRNMLGEVLASAAQYLLHAASAILGEALVFRWSMQLTI 1168
K NFD+ V G I+R+ G VL S L + SA+ EAL F ++Q+
Sbjct: 1563 FLKCNFDSGYVQGRDYTSTGWILRDCNGRVLHSGCAKLQQSYSALQAEALGFLHALQMVW 1622
Query: 1169 QMEFRRVLFETDCLQLFQLWKKPPDGRSYLSSIVGDCFMLSRFFDYVDLSFVRRRGNSVA 1228
+ V FE D L+L L K D L +++ D + + +V R N A
Sbjct: 1623 IRGYCYVWFEGDNLELTNLINKTED-HHLLETLLYDIRFWMTKLPFSSIGYVNRERNLAA 1681
Query: 1229 DFLAGTASKYTDMVWLEEVP 1248
D L A+ + + VP
Sbjct: 1682 DKLTKYANSMSSLYETFHVP 1701
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 585 bits (1509), Expect = e-165
Identities = 383/1177 (32%), Positives = 581/1177 (48%), Gaps = 88/1177 (7%)
Query: 121 SDHSPILLMCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETW----GRSLTEVPDR 176
SDHSP++ AD+ R + FRF++ W+ K + E I++ W G + ++
Sbjct: 4 SDHSPVIATIADKIPRGKQN----FRFDKRWIGK-DGLLEAISQGWNLDSGFREGQFVEK 58
Query: 177 LSDVSGLLGRWGKEQFGDLPRKISDGQALLQELQRKD-----QTKEVLMAINVAERDLDS 231
L++ + +W K + I D +A L QR D + E+ + + A RD
Sbjct: 59 LTNCRRAISKWRKSLIPFGRQTIEDLKAELDVAQRDDDRSREEITELTLRLKEAYRD--- 115
Query: 232 LLEQEEVWWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIAR 291
EE +W Q+SR+ W+K GD N++FFH QRR RN I L D+NG +D DI
Sbjct: 116 ----EEQYWYQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQN 171
Query: 292 VLGDYFGGLFTSSNPEGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPG 351
+ YF LFT++NP+ +E V +++ +L T EV ALF +HP KAPG
Sbjct: 172 IAVSYFQNLFTTANPQVFDEALGEVQVLITDRINDLLTADATECEVRAALFMIHPEKAPG 231
Query: 352 LDGFPTLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPI 411
DG LF+QK W II D+ + LQ + +N T + LIPK +P T+ RPI
Sbjct: 232 PDGMTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPI 291
Query: 412 SLCNVLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGR 471
SLCNV +K+I+K + RLK +LP++I +TQSAFV GRLI DN L+ E FH ++ S +
Sbjct: 292 SLCNVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCK 351
Query: 472 NGMMTLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVL 531
+ M +K DMSKAYD+VEW+F++ +L+KMGF W+S IM + + + + P + L
Sbjct: 352 DKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQP-KGL 410
Query: 532 LLLEAYVRV--ILFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFADDSI 589
++ E +R L +F+ E + ++ ++ GIKVA +P +SHLLFADDS+
Sbjct: 411 IIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSL 470
Query: 590 IFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNVNAVES 649
F +AN ++ +L IL YE SGQ IN KS + V + ++K +L ++ +
Sbjct: 471 FFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGG 530
Query: 650 FDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIPSYVMS 709
YLGLP +G KT++F+FV+DR+ ++ GW LS+ G+EV+IKSV +P YVMS
Sbjct: 531 MGSYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMS 590
Query: 710 CFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSFNIALV 769
CF LP ++ + + V++F+W + D RG+ W +W KL SK DGGLGFR+ FN AL+
Sbjct: 591 CFRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALL 650
Query: 770 AKNWWRIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIFQEGGRWKI 829
AK WR+ T P++L A+VFKG YF + + L + + Y PSY W S++ + + +G ++
Sbjct: 651 AKQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRV 710
Query: 830 GDGSQVDILHDQWLPQGVPVIGSQDLMAEFGVS------KVSHLIDHAAKSWKYALVDFI 883
G G+ + + +D W+P P A++G S KV LID + W L+ +
Sbjct: 711 GSGASISVWNDPWIPAQFP------RPAKYGGSIVDPSLKVKSLIDSRSNFWNIDLLKEL 764
Query: 884 FHPATVSHILKIHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSSTYSQPSLP 943
F P V I + + DTL W T GNY KSGY R + +T P L
Sbjct: 765 FDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARLDLNE--GTTLIGPDL- 821
Query: 944 APLWKKFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCANEEETVFHLFV 1003
L W+ P+ + W+++S +P+ L +RG+ D C C EE++ H
Sbjct: 822 TTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLF 881
Query: 1004 SCPVAQNFWFGSPLSLRVHGFSSMEDFL---ADFFRAADDDALALWQAGVYALWEMRNRV 1060
C A+ W S + F S F F+R A + ++ +W+ RN
Sbjct: 882 QCHPARQIWALSQIPTAPGIFPSNSIFTNLDHLFWRIPSGVDSAPYPWIIWYIWKARNEK 941
Query: 1061 VFRDGE--------IPVPVAAMIQRC---------------SMLAAAPVSEMTVVPRPAP 1097
VF + + + V A Q S + VS+ T
Sbjct: 942 VFENVDKDPMEILLLAVKEAQSWQEAQVELHSERHGSLSIDSRIRVRDVSQDTTFSGFRC 1001
Query: 1098 LLQATWARPPYGIYKLNFDAAVATTGEVGFGLIVRNMLGEVLASAAQYLLHAASAILGEA 1157
+ +W A+ G G + LGE A + + S + E
Sbjct: 1002 FIDGSWK---------------ASDQFSGTGWFCLSSLGESPTMGAANVRRSLSPLHTEM 1046
Query: 1158 LVFRWSMQLTIQMEFRRVLFETDCLQLFQLWKKP---PDGRSYLSSIVGDCFMLSRFFDY 1214
W+M+ I + + V F TDC L ++ P P YL + D + F
Sbjct: 1047 EALLWAMKCMIGADNQNVAFFTDCSDLVKMVSSPTEWPAFSVYLEELQSDREEFTNF--- 1103
Query: 1215 VDLSFVRRRGNSVADFLAGTASKYTDMV-WLEEVPRE 1250
LS + R N AD LA V ++ +PR+
Sbjct: 1104 -SLSLISRSANVKADKLARKIRTVPHHVTYVNNIPRD 1139
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 578 bits (1490), Expect = e-163
Identities = 383/1270 (30%), Positives = 607/1270 (47%), Gaps = 60/1270 (4%)
Query: 4 VYGFPDDRNKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVATCA 63
VYG P +H+ W + + WL +GDFN+ILS A+K+GG + + +
Sbjct: 259 VYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIGGPMREEWTFRNFRNM 318
Query: 64 CSDCALHVVDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHCSDH 123
S C + + G RF+W R TV+ LD +N AW + +P + + SDH
Sbjct: 319 VSHCDIEDMRSKGDRFSWVGER-HTHTVKCCLDRVFINSAWTATFPYAETEFLDFTGSDH 377
Query: 124 SPILLMCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSL----TEVPDRLSD 179
P+L+ + R R +FRF+ + K ++ +W + T + +R+S
Sbjct: 378 KPVLVHFNESFPR----RSKLFRFDNRLIDI-PTFKRIVQTSWRTNRNSRSTPITERISS 432
Query: 180 VSGLLGRWGKEQFGDLPRKISDGQALLQELQRKDQTKEV-LMAINVAERDLDSLLEQEEV 238
+ R + ++I Q+ L + T+ V I + L EE+
Sbjct: 433 CRQAMARLKHASNLNSEQRIKKLQSSLNRAM--ESTRRVDRQLIPQLQESLAKAFSDEEI 490
Query: 239 WWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVLGDYFG 298
+WKQ+SR W+K GD+NT +FH R +N + + DD GR D +I D+F
Sbjct: 491 YWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFT 550
Query: 299 GLFTSSNPEGIEETTNLVAGRVSETHLTV---LGEPFTREEVEEALFQMHPTKAPGLDGF 355
+F+++ GI+ + A S TV L + F+ E+ +A+ Q+ KAPG DG
Sbjct: 551 NIFSTN---GIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGL 607
Query: 356 PTLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISLCN 415
FY+ WDI+G DV + + IN T + +IPKI P + +RPI+LCN
Sbjct: 608 TARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCN 667
Query: 416 VLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGRNGMM 475
VL+K+I+K + NRLK L I+ +Q+AF+PGR+I DN ++ +E H +K R M
Sbjct: 668 VLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYM 727
Query: 476 TLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVLLLLE 535
+K D+SKAYDRVEW FL+ ++ GF W+ IM+ + + + + P +
Sbjct: 728 AVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTR 787
Query: 536 AYVRVI-LFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFADDSIIFARA 594
+ L +F+ + S L+ L G+++ N AP I+HL FADDS+ F +A
Sbjct: 788 GIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQA 847
Query: 595 NTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNVNAVESFDKYL 654
N + + + ++ YE SGQ IN+ KS ++ V + ++LKQ+L + KYL
Sbjct: 848 NVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGGKYL 907
Query: 655 GLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIPSYVMSCFILP 714
GLP G+ K +F ++ DRV K+ W LS AG+E+++KSV A+P Y MSCF LP
Sbjct: 908 GLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLP 967
Query: 715 DSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSFNIALVAKNWW 774
+ ++IE ++ F+W ++RG+ W +WK+L SK +GGLGFRD FN AL+AK W
Sbjct: 968 KGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAW 1027
Query: 775 RIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIFQEGGRWKIGDGSQ 834
R+ P +L A+V K YF +L AK + SY W+S+L + ++G R IGDG
Sbjct: 1028 RLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQN 1087
Query: 835 VDILHDQWLPQGVP-VIGSQDLMAEFGVSKVSHLIDHAAK--SWKYALVDFIFHPATVSH 891
+ I D + P + +++ E +++L + W + + +
Sbjct: 1088 IRIGLDNIVDSHPPRPLNTEETYKEM---TINNLFERKGSYYFWDDSKISQFVDQSDHGF 1144
Query: 892 ILKIHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSSTYSQPSLPAP-----L 946
I +I+L + D ++W G Y +SGY +L + + P++ P L
Sbjct: 1145 IHRIYLAKSKKPDKIIWNYNTTGEYTVRSGY------WLLTHDPSTNIPAINPPHGSIDL 1198
Query: 947 WKKFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCANEEETVFHLFVSCP 1006
+ W P+ K WR +S L L RGM +DP+CP C E E++ H +CP
Sbjct: 1199 KTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICPRCHRENESINHALFTCP 1258
Query: 1007 VAQNFWFGSPLSL---------RVHGFSSMEDFLADFFRAADDDALALWQAGVYALWEMR 1057
A W+ S SL S++ +F+ D + L +W ++ +W+ R
Sbjct: 1259 FATMAWWLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWL--IWRIWKAR 1316
Query: 1058 NRVV---FRDGEIPVPVAAMIQRCSMLAAAPVSEMTVVP-RPAPLLQATWARPPYGIYKL 1113
N VV FR+ ++A + L A + T P R + W PP K
Sbjct: 1317 NNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKC 1376
Query: 1114 NFDAAVATTG-EVGFGLIVRNMLGEVLASAAQYLLHAASAILGEALVFRWSMQLTIQMEF 1172
NFDA E G I+RN G ++ + L H ++ + E ++Q T +
Sbjct: 1377 NFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGY 1436
Query: 1173 RRVLFETDCLQLFQLWKKPPDGRSYLSSIVG---DCFMLSRFFDYVDLSFVRRRGNSVAD 1229
+V E DC L L +G S+ SS+ D + F + F+RR+GN +A
Sbjct: 1437 TQVFMEGDCQTLINL----INGISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLAH 1492
Query: 1230 FLAGTASKYT 1239
LA Y+
Sbjct: 1493 VLAKYGCTYS 1502
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 577 bits (1487), Expect = e-163
Identities = 348/1030 (33%), Positives = 531/1030 (50%), Gaps = 45/1030 (4%)
Query: 4 VYGFPDDRNKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVATCA 63
VYG P N+HR W L+R R +PW+ IGDFN+ L + + +MQ A
Sbjct: 741 VYGEPRVENRHRMWSLLRTIRQSSALPWMVIGDFNETLWQFEHFSKNPRCETQMQNFRDA 800
Query: 64 CSDCALHVVDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHCSDH 123
DC L + F G T+ N R V+ RLD A+ +D W L+P +V H+ CSDH
Sbjct: 801 LYDCDLQDLGFKGVPHTYDNRRDGWRNVKVRLDRAVADDKWRDLFPEAQVSHLVSPCSDH 860
Query: 124 SPILLMCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSLTEVPDRLSDVSGL 183
SPILL + + R+ +E +W ++ E +VI E W + V L D++
Sbjct: 861 SPILLEFIVKDTTRP--RQKCLHYEIVW-EREPESVQVIEEAWINA--GVKTDLGDINIA 915
Query: 184 LGR-------WGKEQFGDLPRKISDGQALLQELQRKDQTKEVLMAINVAERDLDSLLEQE 236
LGR W K + ++ +++ + L++L + + +I A ++ +L +E
Sbjct: 916 LGRVMSALRSWSKTKVKNVGKELEKARKKLEDLIASNAARS---SIRQATDHMNEMLYRE 972
Query: 237 EVWWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVLGDY 296
E+ W QRSR +WLK GD+NTRFFH +A R K+N I L+D+NG + + + +Y
Sbjct: 973 EMLWLQRSRVNWLKEGDRNTRFFHSRAVWRAKKNKISKLRDENGAIHSTTSVLETMATEY 1032
Query: 297 FGGLFTSSNPEGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPGLDGFP 356
F G++ + E T L +V++ L + F EE+ +A+FQ+ P K+P DGFP
Sbjct: 1033 FQGVYKADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPRPDGFP 1092
Query: 357 TLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISLCNV 416
FYQ+ W + D+ Q + P +N T +VLIPK +P +RPISLCNV
Sbjct: 1093 ARFYQRNWGTLKSDIILAVRNFFQSGLMPKGVNDTAIVLIPKKDQPIDLKDYRPISLCNV 1152
Query: 417 LFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGRNGMMT 476
++K+++K + NRL+ IL D++ + QSAF+ GR+I DNAL+ +ECFH ++K +
Sbjct: 1153 VYKVVSKCLVNRLRPILDDLVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACA 1212
Query: 477 LKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRV-----L 531
KLD+SKAYDRV+W FL+ L K+GF WVS IM LC+T + V L
Sbjct: 1213 YKLDLSKAYDRVDWRFLELALNKLGFAHRWVSWIM---------LCVTTVRYSVKFNGTL 1263
Query: 532 LLLEAYVRVI-----LFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFAD 586
L A R + L +FL + S LL V L +K+ +AP IS+LLFAD
Sbjct: 1264 LRSFAPTRGLRQGEPLSPFLFLFVADGLSLLLKEKVAQNSLTPLKICRQAPGISYLLFAD 1323
Query: 587 DSIIFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNVNA 646
D+++F +A +EAE V +L+ Y + +GQ+IN K + P + +++ L V
Sbjct: 1324 DTLLFFKAEKKEAEVVKEVLTNYAQGTGQLINPAKCSILFGEASPSSVSEDIRNTLQVER 1383
Query: 647 VESFDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIPSY 706
D+YLG PT G+ F ++ ++ K++ W E+ LS G+E+LIK+V+QAIP Y
Sbjct: 1384 DNFEDRYLGFPTPEGRMHKGRFQSLQAKIAKRVIQWGENFLSSGGKEILIKAVIQAIPVY 1443
Query: 707 VMSCFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSFNI 766
VM F PDS+ ++ +M F+WG D +R W +W LT++K +GGLGFRD+K FN
Sbjct: 1444 VMGLFKFPDSVYDELTKMTRNFWWGADNGRRRTHWRAWDSLTKAKINGGLGFRDYKLFNQ 1503
Query: 767 ALVAKNWWRIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIFQEGGR 826
AL+ + WR+ P +L AQV K YF G L S W I + ++G
Sbjct: 1504 ALLTRQAWRLIEFPNSLCAQVLKAKYFPHGSLTDTTFSANASPTWHGIEYGLDLLKKGII 1563
Query: 827 WKIGDGSQVDILHDQWLPQGV---PVIGSQDLMAEFGVSKVSHLIDHAAKSWKYALVDFI 883
W+IG+G+ V I D W+P+ + PV + ++ VS LI +W A ++
Sbjct: 1564 WRIGNGNSVRIWRDPWIPRDLSRRPVSSKANCRLKW----VSDLIAEDG-TWDSAKINQY 1618
Query: 884 FHPATVSHILKIHLPLNGSVDTLMWPETVDGNYCSKSGY-IFVRKNFLGACSSTYSQPSL 942
F I KI + D + W G + +S Y + ++ + CSS S S
Sbjct: 1619 FLKIDADIIQKICISARLEEDFIAWHPDKTGRFSVRSAYKLALQLADMNNCSS--SSSSR 1676
Query: 943 PAPLWKKFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCANEEETVFHLF 1002
W+ W+ + + + AWRV S+ L +R ++ +C +C E+E H
Sbjct: 1677 LNKSWELIWKCNVPQKVRIFAWRVASNSLATMENKKKRNLERFDVCGICDREKEDAGHAL 1736
Query: 1003 VSCPVAQNFW 1012
C A + W
Sbjct: 1737 CRCVHANSLW 1746
Score = 61.2 bits (147), Expect = 2e-07
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 2/146 (1%)
Query: 1103 WARPPYGIYKLNFDAAVATTGEVG-FGLIVRNMLGEVLASAAQYLLHAASAILGEALVFR 1161
W RP G KLN D + E G G+I+RN LG V+ S+ + L + + E
Sbjct: 1777 WERPRNGWMKLNVDGSFDINSEKGGIGMILRNCLGNVIFSSCRSLDSCSGPLEAELHACV 1836
Query: 1162 WSMQLTIQMEFRRVLFETDCLQLFQLWKKPPDGRSYLSSIVGDCFMLSRFFDYVDLSFVR 1221
+ L + + ETDC + QL P RS L++I + L + +S V+
Sbjct: 1837 EGLHLALHWTLLPIQVETDCSSVIQLLNHPDKDRSVLANIAQEAKSLMAGDRQIAISKVQ 1896
Query: 1222 RRGNSVADFLAGTA-SKYTDMVWLEE 1246
R N ++ FLA A ++ WL E
Sbjct: 1897 RSQNVISHFLANKARAESLSSFWLGE 1922
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 575 bits (1481), Expect = e-162
Identities = 382/1270 (30%), Positives = 605/1270 (47%), Gaps = 60/1270 (4%)
Query: 4 VYGFPDDRNKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVATCA 63
VYG P +H+ W + + WL +GDFN+ILS A+K+GG + + +
Sbjct: 485 VYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIGGPMREEWTFRNFRNM 544
Query: 64 CSDCALHVVDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHCSDH 123
S C + + G RF+W R TV+ LD +N AW + +P ++ + SDH
Sbjct: 545 VSHCDIEDMRSKGDRFSWVGER-HTHTVKCCLDRVFINSAWTATFPYAEIEFLDFTGSDH 603
Query: 124 SPILLMCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSL----TEVPDRLSD 179
P+L+ + R R +FRF+ + K ++ +W + T + +R+S
Sbjct: 604 KPVLVHFNESFPR----RSKLFRFDNRLIDI-PTFKRIVQTSWRTNRNSRSTPITERISS 658
Query: 180 VSGLLGRWGKEQFGDLPRKISDGQALLQELQRKDQTKEV-LMAINVAERDLDSLLEQEEV 238
+ R + ++I Q+ L + T+ V I + L EE+
Sbjct: 659 CRQAMARLKHASNLNSEQRIKKLQSSLNRAM--ESTRRVDRQLIPQLQESLAKAFSDEEI 716
Query: 239 WWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVLGDYFG 298
+WKQ+SR W+K GD+NT +FH R +N + + DD GR D +I D+F
Sbjct: 717 YWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFT 776
Query: 299 GLFTSSNPEGIEETTNLVAGRVSETHLTV---LGEPFTREEVEEALFQMHPTKAPGLDGF 355
+F+++ GI+ + A S TV L + F+ E+ +A+ Q+ KAPG DG
Sbjct: 777 NIFSTN---GIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGL 833
Query: 356 PTLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISLCN 415
FY+ WDI+G DV + + IN T + +IPKI P + +RPI+LCN
Sbjct: 834 TARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCN 893
Query: 416 VLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGRNGMM 475
VL+K+I+K + NRLK L I+ +Q+AF+PGR+I DN ++ +E H +K R M
Sbjct: 894 VLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYM 953
Query: 476 TLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVLLLLE 535
+K D+SKAYDRVEW FL+ ++ GF W+ IM+ + + + + P +
Sbjct: 954 AVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTR 1013
Query: 536 AYVRVI-LFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFADDSIIFARA 594
+ L +F+ + S L+ L G+++ N AP I+HL FADDS+ F +A
Sbjct: 1014 GIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQA 1073
Query: 595 NTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNVNAVESFDKYL 654
N + + + ++ YE SGQ IN+ KS ++ V + + LKQ+L + KYL
Sbjct: 1074 NVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGGKYL 1133
Query: 655 GLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIPSYVMSCFILP 714
GLP G+ K +F ++ DRV K+ W LS AG+E+++KSV A+P Y MSCF LP
Sbjct: 1134 GLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLP 1193
Query: 715 DSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSFNIALVAKNWW 774
+ ++IE ++ F+W ++RG+ W +WK+L SK +GGLGFRD FN AL+AK W
Sbjct: 1194 KGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAW 1253
Query: 775 RIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIFQEGGRWKIGDGSQ 834
R+ P +L A+V K YF +L AK + SY W+S+L + ++G R IGDG
Sbjct: 1254 RLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQN 1313
Query: 835 VDILHDQWLPQGVP-VIGSQDLMAEFGVSKVSHLIDHAAK--SWKYALVDFIFHPATVSH 891
+ I D + P + +++ E +++L + W + + +
Sbjct: 1314 IRIGLDNIVDSHPPRPLNTEETYKEM---TINNLFERKGSYYFWDDSKISQFVDQSDHGF 1370
Query: 892 ILKIHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSSTYSQPSLPAP-----L 946
I +I+L + D ++W G Y +SGY +L + + P++ P L
Sbjct: 1371 IHRIYLAKSKKPDKIIWNYNTTGEYTVRSGY------WLLTHDPSTNIPAINPPHGSIDL 1424
Query: 947 WKKFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCANEEETVFHLFVSCP 1006
+ W P+ K WR +S L L RGM +DP CP C E E++ H +CP
Sbjct: 1425 KTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCP 1484
Query: 1007 VAQNFWFGSPLSL---------RVHGFSSMEDFLADFFRAADDDALALWQAGVYALWEMR 1057
A W S SL S++ +F+ D + L +W ++ +W+ R
Sbjct: 1485 FATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWL--IWRIWKAR 1542
Query: 1058 NRVV---FRDGEIPVPVAAMIQRCSMLAAAPVSEMTVVP-RPAPLLQATWARPPYGIYKL 1113
N VV FR+ ++A + L A + T P R + W PP K
Sbjct: 1543 NNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKC 1602
Query: 1114 NFDAAVATTG-EVGFGLIVRNMLGEVLASAAQYLLHAASAILGEALVFRWSMQLTIQMEF 1172
NFDA E G I+RN G ++ + L H ++ + E ++Q T +
Sbjct: 1603 NFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGY 1662
Query: 1173 RRVLFETDCLQLFQLWKKPPDGRSYLSSIVG---DCFMLSRFFDYVDLSFVRRRGNSVAD 1229
+V E DC L L +G S+ SS+ D + F + F+R++GN +A
Sbjct: 1663 TQVFMEGDCQTLINL----INGISFHSSLANHLEDISFWANKFASIQFGFIRKKGNKLAH 1718
Query: 1230 FLAGTASKYT 1239
LA Y+
Sbjct: 1719 VLAKYGCTYS 1728
>gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536206|ref|NP_922405.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|27311287|gb|AAO00713.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1557
Score = 565 bits (1456), Expect = e-159
Identities = 333/1065 (31%), Positives = 525/1065 (49%), Gaps = 82/1065 (7%)
Query: 4 VYGFPDDRNKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVATCA 63
VYG P N+H+ W L+ + ++ WL IGDFN+ L + +MQ
Sbjct: 539 VYGEPRVENRHKMWSLLNSIKQSSNLSWLVIGDFNEALWQFEHFSRKPRSDAQMQAFRDV 598
Query: 64 CSDCALHVVDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHCSDH 123
C LH + +G T+ N R V+ RLD AL +D W L+ +V H+ CS+H
Sbjct: 599 LDTCELHDLGISGLPHTYDNRRGGWNNVKVRLDRALADDEWRDLFSQYQVQHLVSPCSNH 658
Query: 124 SPILLMCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSLTEVPDRLSDVSGL 183
PI+L VPD+
Sbjct: 659 CPIVLKLHG---------------------------------------SVPDQ------- 672
Query: 184 LGRWGKEQFGDLPRKISDGQALLQELQRKDQTKEVLMAINVAERDLDSLLEQEEVWWKQR 243
W K+++ ++ R++ + L L K AI ++ LL +EE+ W QR
Sbjct: 673 --SWSKKKYKNIGRELEKTRKKLSNLLEAGTDKA---AIRQTSDYMNELLYREEMLWLQR 727
Query: 244 SRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVLGDYFGGLFTS 303
SR +WLK GD+NT+FFH + R K+N I L+D G + ++ YF +FT+
Sbjct: 728 SRVNWLKEGDRNTKFFHNRVAWRAKKNKITKLRDAAGTFHRSKMVMEQMATQYFKDMFTA 787
Query: 304 SNPEGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPGLDGFPTLFYQKY 363
T L+ +V+E L F+ +E+ ALFQ+ P KAPG DGF FYQ+
Sbjct: 788 DPNLDHSPVTRLIQPKVTEEMNNRLCSEFSEDEIANALFQIGPLKAPGTDGFLARFYQRN 847
Query: 364 WDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISLCNVLFKIITK 423
W I +D+ + I +N T +VLIPKI +P FRPISLCNV++K+++K
Sbjct: 848 WGCIKNDIVRAVKEFFHSGIMLEGVNDTAIVLIPKIEQPRDLRDFRPISLCNVIYKVLSK 907
Query: 424 TIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGRNGMMTLKLDMSK 483
+ NRL+ L ++I + QSAFVP R+I DNAL+ +ECFHF+++ + R+ KLD+SK
Sbjct: 908 CLVNRLRPFLDELISKNQSAFVPRRMITDNALLAFECFHFIQRNKNPRSAACAYKLDLSK 967
Query: 484 AYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVLLLLEAYVRVILF 543
AYDRV+W FL+ + K GF WVS +M+ C++ + + R F
Sbjct: 968 AYDRVDWRFLEQSMYKWGFSHCWVSWVMT---------CISTV-------CDKGTRCDPF 1011
Query: 544 RLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFADDSIIFARANTQEAECVL 603
+FL + S LL V + I+V ++AP ISHLLFADD+++F +A+ +++ +
Sbjct: 1012 --LFLFVADGLSLLLEEKVEQGAISPIRVCHQAPGISHLLFADDTLLFFKADLSQSQAIK 1069
Query: 604 NILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNVNAVESFDKYLGLPTMIGKF 663
+ +Y ++GQ+IN K + ++P + + L + + E DKYLGLPT G+
Sbjct: 1070 EVFGSYATSTGQLINPTKCSILFGNSLPIASRDAITNCLQIASTEFEDKYLGLPTPGGRM 1129
Query: 664 KTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIPSYVMSCFILPDSLCADIER 723
F +++R+WKK+ W E+ LS G+EVLIK+V+QAIP YVM F LP+S+C D+
Sbjct: 1130 HKGRFQSLRERIWKKILQWGENYLSSGGKEVLIKAVIQAIPVYVMGIFKLPESVCEDLTS 1189
Query: 724 MVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSFNIALVAKNWWRIYTQPETL 783
+ F+WG + KR W +WK LT+SK GGLGF+D + FN AL+A+ WR+ P++L
Sbjct: 1190 LTRNFWWGAEKGKRKTHWKAWKSLTKSKSLGGLGFKDIRLFNQALLARQAWRLIDNPDSL 1249
Query: 784 LAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIFQEGGRWKIGDGSQVDILHDQWL 843
A+V K Y+ G ++ G S W +I + ++G W+IG+G V + D WL
Sbjct: 1250 CARVLKAKYYPNGSIVDTSFGGNASPGWQAIEHGLELVKKGIIWRIGNGRSVRVWQDPWL 1309
Query: 844 PQGV---PVIGSQDLMAEFGVSKVSHLIDHAAKSWKYALVDFIFHPATVSHILKIHLPLN 900
P+ + P+ + ++ ++D+ W ++ IF P V ILK+
Sbjct: 1310 PRDLSRRPITPKNNCRIKW---VADLMLDNG--MWDANKINQIFLPVDVEIILKLRTSSR 1364
Query: 901 GSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSSTYSQPSLPAPLWKKFWRTSAQPRCK 960
D + W GN+ ++ Y SS+ S ++ W+ W+ + + K
Sbjct: 1365 DEEDFIAWHPDKLGNFSVRTAYRLAENWAKEEASSSSSDVNI-RKAWELLWKCNVPSKVK 1423
Query: 961 EVAWRVVSSLLPIRAALHRRGMDVDPLCPVCANEEETVFHLFVSCPVAQNFWF----GSP 1016
WR S+ LP +R +++ C +C E+E H CP A++ W +
Sbjct: 1424 IFTWRATSNCLPTWDNKKKRNLEISDTCVICGMEKEDTMHALCRCPQAKHLWLAMKESND 1483
Query: 1017 LSLRVHGFSSMEDFLADFFRAADDDALALWQAGVYALWEMRNRVV 1061
LSLR+ +L + D ++ ++ +W + N ++
Sbjct: 1484 LSLRMDDHLLGPSWLFNRLALLPDHEQPMFLMVLWRIWFVHNEII 1528
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 563 bits (1452), Expect = e-158
Identities = 387/1253 (30%), Positives = 597/1253 (46%), Gaps = 75/1253 (5%)
Query: 12 NKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVATCACSDCALHV 71
N+ W I WL GDFNDIL ++K GG L G S L
Sbjct: 56 NRSVFWDKISSLGAQRSSAWLLTGDFNDILDNSEKQGGPLRWEGFFLAFRSFVSQNGLWD 115
Query: 72 VDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHCSDHSPILLMCA 131
++ TG +W R ++ RLD AL N +W L+P +K ++ SDH P++
Sbjct: 116 INHTGNSLSWRGTRYSH-FIKSRLDRALGNCSWSELFPMSKCEYLRFEGSDHRPLVTYFG 174
Query: 132 DRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSLTE-VPDRLSDVSGLLGRWGKE 190
KR FRF+ L++ EE + ++ E W + + V ++S + +W KE
Sbjct: 175 ----APPLKRSKPFRFDRR-LREKEEIRALVKEVWELARQDSVLYKISRCRQSIIKWTKE 229
Query: 191 QFGDLPRKISDGQALLQELQRKDQTKEVLMAINVAERDLDSLLEQEEVWWKQRSRASWLK 250
Q + + I Q L+ D L I ++L++ QEE++WKQ SR WL
Sbjct: 230 QNSNSAKAIKKAQQALESALSADIPDPSL--IGSITQELEAAYRQEELFWKQWSRVQWLN 287
Query: 251 HGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVLGDYFGGLFTSSNPEGIE 310
GD+N +FH RR N + V++D +G+E ++ IA + YF +FT+SN ++
Sbjct: 288 SGDRNKGYFHATTRTRRMLNNLSVIEDGSGQEFHEEEQIASTISSYFQNIFTTSNNSDLQ 347
Query: 311 ETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPGLDGFPTLFYQKYWDIIGDD 370
++ +S L + + E++EALF + KAPG DGF F+ YWDII D
Sbjct: 348 VVQEALSPIISSHCNEELIKISSLLEIKEALFSISADKAPGPDGFSASFFHAYWDIIEAD 407
Query: 371 VSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISLCNVLFKIITKTIANRLK 430
VS +N+T + LIPKI P + +RPI+LCNV +KI+ K + RL+
Sbjct: 408 VSRDIRSFFVDSCLSPRLNETHVTLIPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQ 467
Query: 431 IILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGRNGMMTLKLDMSKAYDRVEW 490
L ++I QSAFVPGR I DN L+ +E HF++ + + M +K DMSKAYDR++W
Sbjct: 468 PWLSELISLHQSAFVPGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKW 527
Query: 491 SFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCL------TEIPSRVLLLLEAYVRVILFR 544
+FLQ VL ++GF W+ +M + + + + +PSR L + L
Sbjct: 528 NFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDP-----LSP 582
Query: 545 LIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFADDSIIFARANTQEAECVLN 604
+F+ E S L ++ ++ GI+VA +P ++HLLFADD++ F + N + N
Sbjct: 583 YLFILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGALSN 642
Query: 605 ILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNVNAVESFDKYLGLPTMIGKFK 664
IL YE ASGQ INL KS ++ S PQ+ +K L ++ KYLGLP G+ K
Sbjct: 643 ILKKYELASGQSINLAKSAITFSSKTPQDIKRRVKLSLRIDNEGGIGKYLGLPEHFGRRK 702
Query: 665 TRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIPSYVMSCFILPDSLCADIERM 724
IF+ + DR+ ++ W LS AG+++L+K+V+ ++PSY M CF LP SLC I+ +
Sbjct: 703 RDIFSSIVDRIRQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSV 762
Query: 725 VSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSFNIALVAKNWWRIYTQPETLL 784
++RF+W DKR + W SW KLT +GGLGFR+ + AK WRI +P +LL
Sbjct: 763 LTRFWWDSKPDKRKMAWVSWDKLTLPINEGGLGFREIE-------AKLSWRILKEPHSLL 815
Query: 785 AQVFKGVYFAQGDLLGAKRGYRPSYA---WSSILQSSWIFQEGGRWKIGDGSQVDILHDQ 841
++V G Y + PS+A W IL + ++G W IG G +++ +
Sbjct: 816 SRVLLGKYCNTSSFMDCSAS--PSFASHGWRGILAGRDLLRKGLGWSIGQGDSINVWTEA 873
Query: 842 WL-------PQGVPVIGSQDLMAEFGVSKVSHLIDHAAKSWKYALVDFIFHPATVSHILK 894
WL P G P ++DL V LI H KSW + P I K
Sbjct: 874 WLSPSSPQTPIGPPTETNKDL-------SVHDLICHDVKSWNVEAIRKHL-PQYEDQIRK 925
Query: 895 IHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSSTYSQPSLPAPLWKK-FWRT 953
I + D+L+W G Y +K+GY + N A ++ W+K W+
Sbjct: 926 ITINALPLQDSLVWLPVKSGEYTTKTGYALAKLNSFPASQLDFN--------WQKNIWKI 977
Query: 954 SAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCANEEETVFHLFVSCPVAQNFWF 1013
P+ K W+ + LP+ AL RR ++ + C C E ++ HL + CP A+ W
Sbjct: 978 HTSPKVKHFLWKAMKGALPVGEALSRRNIEAEVTCKRCGQTESSL-HLMLLCPYAKKVWE 1036
Query: 1014 GSPL----SLRVHGFSSMEDFLADFFRAADDDALALWQAGVYA-----LWEMRNRVVFRD 1064
+P+ S H SS+ L D R L A +Y LW+ RNR++F +
Sbjct: 1037 LAPVLFNPSEATH--SSVALLLVDAKRMVALPPTGLGSAPLYPWLLWHLWKARNRLIFDN 1094
Query: 1065 GEIPVPVAAMIQRCSMLAAAPVSEMTVVPRPAPLLQATWARPPYGIYKLNFDAAVATTGE 1124
++ + + A A + ++ P+P+ P + DAA T+G
Sbjct: 1095 HS--CSEEGLVLKAILDARAWMEAQLLIHHPSPISDYPSPTPNLKVTSCFVDAAWTTSGY 1152
Query: 1125 VGFGLIVRNMLGEVLASAAQYLLHAASAILGEALVFRWSMQLTIQMEFRRVLFETDCLQL 1184
G G +++ + SA++ E L ++ + R++ +DC +L
Sbjct: 1153 CGMGWFLQDPYKVKIKENQSSSSFVGSALMAETLAVHLALVDALSTGVRQLNVFSDCKEL 1212
Query: 1185 FQLWKKPPDGRSY--LSSIVGDCFMLSRFFDYVDLSFVRRRGNSVADFLAGTA 1235
L G+S L ++ D LS F ++ F+ R N VAD LA +A
Sbjct: 1213 ISLLN---SGKSIVELRGLLHDIRELSVSFTHLCFFFIPRLSNVVADSLAKSA 1262
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 558 bits (1437), Expect = e-157
Identities = 375/1234 (30%), Positives = 592/1234 (47%), Gaps = 64/1234 (5%)
Query: 1 VLAVYGFPDDRNKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVA 60
+ VYG P + + W + W IGDFNDI S +KLGG Q
Sbjct: 79 ISCVYGLPVTHMRPKLWEHLNSIGLKRAEAWCLIGDFNDIRSNDEKLGGPRRSPSSFQCF 138
Query: 61 TCACSDCALHVVDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHC 120
+C++H + TG FTW NR V+ +LD N AW S++P+ + +
Sbjct: 139 EHMLLNCSMHELGSTGNSFTWGGNR-NDQWVQCKLDRCFGNPAWFSIFPNAHQWFLEKFG 197
Query: 121 SDHSPILLMCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSLTEVPD----R 176
SDH P+L+ + + + + FR+++ L + C EVI +W ++++
Sbjct: 198 SDHRPVLVKFTNDNELFRGQ----FRYDKR-LDDDPYCIEVIHRSWNSAMSQGTHSSFFS 252
Query: 177 LSDVSGLLGRWGKEQFGDLPRKISDGQALLQELQRK-DQTKEVLM----AINVAERDLDS 231
L + + W ++ Q+ ++ L++ D K + + I + L
Sbjct: 253 LIECRRAISVWKHS-------SDTNAQSRIKRLRKDLDAEKSIQIPCWPRIEYIKDQLSL 305
Query: 232 LLEQEEVWWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIAR 291
EE++W+Q+SR WL GDKNT FFH + R +N + L D+N +E ++D +
Sbjct: 306 AYGDEELFWRQKSRQKWLAGGDKNTGFFHATVHSERLKNELSFLLDENDQEFTRNSDKGK 365
Query: 292 VLGDYFGGLFTSSNPEGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPG 351
+ +F LFTS+ + +V+ L + T EV A+F ++ APG
Sbjct: 366 IASSFFENLFTSTYILTHNNHLEGLQAKVTSEMNHNLIQEVTELEVYNAVFSINKESAPG 425
Query: 352 LDGFPTLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPI 411
DGF LF+Q++WD++ + + + P N T + LIPKI P+ + RPI
Sbjct: 426 PDGFTALFFQQHWDLVKHQILTEIFGFFETGVLPQDWNHTHICLIPKITSPQRMSDLRPI 485
Query: 412 SLCNVLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGR 471
SLC+VL+KII+K + RLK LP I+ TQSAFVP RLI DN LV +E H ++
Sbjct: 486 SLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRIS 545
Query: 472 NGMMTLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVL 531
M K DMSKAYDRVEW FL+ ++ +GF W+S IM+ C+T + VL
Sbjct: 546 KEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKWISWIMN---------CVTSVSYSVL 596
Query: 532 LLLEAYVRVI----------LFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISH 581
+ + Y +I L +F+ E +L ++ + GI+ ++ ++H
Sbjct: 597 INGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITGIQFQDKKVSVNH 656
Query: 582 LLFADDSIIFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQL 641
LLFADD+++ +A QE E ++ LS Y + SGQ+INL+KS ++ +NV + +K
Sbjct: 657 LLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSR 716
Query: 642 LNVNAVESFDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQ 701
++ KYLGLP + K +F F+K+++ +L GW TLS+ G+EVL+KS+
Sbjct: 717 SGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIAL 776
Query: 702 AIPSYVMSCFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDF 761
A+P YVMSCF LP +LC + ++ F+W KR + W SW++LT K GG GF+D
Sbjct: 777 ALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDL 836
Query: 762 KSFNIALVAKNWWRIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIF 821
+ FN AL+AK WR+ + +L ++VF+ YF+ D L A RG RPSYAW SIL +
Sbjct: 837 QCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELL 896
Query: 822 QEGGRWKIGDGSQVDILHDQWLPQGV---PVIGSQDLMAEFGVSKVSHLIDHAAKSWKYA 878
+G R IG+G + + D+WL G P+ + + + KVS LID +++W
Sbjct: 897 MQGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVDL---KVSQLIDPTSRNWNLN 953
Query: 879 LVDFIFHPATVSHILKIHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSSTYS 938
++ +F V ILK PL D+ W + +G Y K+GY F+ K
Sbjct: 954 MLRDLFPWKDVEIILK-QRPLFFKEDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAK 1012
Query: 939 QPSLPAPLWKKFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCANEEETV 998
L+ K W P+ + W+ + +P+ L RG+ D C +C E ET+
Sbjct: 1013 VKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETI 1072
Query: 999 FHLFVSCPVAQNFWFGSPLSLRVHGFSSM----EDFLADFFRAADDD----ALALWQAGV 1050
H+ CP+A+ W + LS FS+ L D + D ++ W +
Sbjct: 1073 NHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPWI--L 1130
Query: 1051 YALWEMRNRVVFR-DGEIPVPVAAMIQRCSMLAAAPVSEMTVVPRPAPLLQAT-WARPPY 1108
+ LW+ RN ++F G I ++ + S T + L+ T W P
Sbjct: 1131 WFLWKNRNALLFEGKGSI---TTTLVDKAYEAYHEWFSAQTHMQNDEKHLKITKWCPPLP 1187
Query: 1109 GIYKLNFDAAVATTGEV-GFGLIVRNMLGEVLASAAQYLLHAASAILGEALVFRWSMQLT 1167
G K N A + G +VR+ G+VL + + S + + W+++
Sbjct: 1188 GELKCNIGFAWSKQHHFSGASWVVRDSQGKVLLHSRRSFNEVHSPYSAKIRSWEWALESM 1247
Query: 1168 IQMEFRRVLFETDCLQLFQLWKKPPDGRSYLSSI 1201
F RV+F + ++ Q KP + L I
Sbjct: 1248 THHHFDRVIFASSTHEIIQALHKPHEWPLLLGDI 1281
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 558 bits (1437), Expect = e-157
Identities = 375/1234 (30%), Positives = 592/1234 (47%), Gaps = 64/1234 (5%)
Query: 1 VLAVYGFPDDRNKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVA 60
+ VYG P + + W + W IGDFNDI S +KLGG Q
Sbjct: 100 ISCVYGLPVTHMRPKLWEHLNSIGLKRAEAWCLIGDFNDIRSNDEKLGGPRRSPSSFQCF 159
Query: 61 TCACSDCALHVVDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHC 120
+C++H + TG FTW NR V+ +LD N AW S++P+ + +
Sbjct: 160 EHMLLNCSMHELGSTGNSFTWGGNR-NDQWVQCKLDRCFGNPAWFSIFPNAHQWFLEKFG 218
Query: 121 SDHSPILLMCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSLTEVPD----R 176
SDH P+L+ + + + + FR+++ L + C EVI +W ++++
Sbjct: 219 SDHRPVLVKFTNDNELFRGQ----FRYDKR-LDDDPYCIEVIHRSWNSAMSQGTHSSFFS 273
Query: 177 LSDVSGLLGRWGKEQFGDLPRKISDGQALLQELQRK-DQTKEVLM----AINVAERDLDS 231
L + + W ++ Q+ ++ L++ D K + + I + L
Sbjct: 274 LIECRRAISVWKHS-------SDTNAQSRIKRLRKDLDAEKSIQIPCWPRIEYIKDQLSL 326
Query: 232 LLEQEEVWWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIAR 291
EE++W+Q+SR WL GDKNT FFH + R +N + L D+N +E ++D +
Sbjct: 327 AYGDEELFWRQKSRQKWLAGGDKNTGFFHATVHSERLKNELSFLLDENDQEFTRNSDKGK 386
Query: 292 VLGDYFGGLFTSSNPEGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPG 351
+ +F LFTS+ + +V+ L + T EV A+F ++ APG
Sbjct: 387 IASSFFENLFTSTYILTHNNHLEGLQAKVTSEMNHNLIQEVTELEVYNAVFSINKESAPG 446
Query: 352 LDGFPTLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPI 411
DGF LF+Q++WD++ + + + P N T + LIPKI P+ + RPI
Sbjct: 447 PDGFTALFFQQHWDLVKHQILTEIFGFFETGVLPQDWNHTHICLIPKITSPQRMSDLRPI 506
Query: 412 SLCNVLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGR 471
SLC+VL+KII+K + RLK LP I+ TQSAFVP RLI DN LV +E H ++
Sbjct: 507 SLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRIS 566
Query: 472 NGMMTLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVL 531
M K DMSKAYDRVEW FL+ ++ +GF W+S IM+ C+T + VL
Sbjct: 567 KEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKWISWIMN---------CVTSVSYSVL 617
Query: 532 LLLEAYVRVI----------LFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISH 581
+ + Y +I L +F+ E +L ++ + GI+ ++ ++H
Sbjct: 618 INGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITGIQFQDKKVSVNH 677
Query: 582 LLFADDSIIFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQL 641
LLFADD+++ +A QE E ++ LS Y + SGQ+INL+KS ++ +NV + +K
Sbjct: 678 LLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSR 737
Query: 642 LNVNAVESFDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQ 701
++ KYLGLP + K +F F+K+++ +L GW TLS+ G+EVL+KS+
Sbjct: 738 SGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIAL 797
Query: 702 AIPSYVMSCFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDF 761
A+P YVMSCF LP +LC + ++ F+W KR + W SW++LT K GG GF+D
Sbjct: 798 ALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDL 857
Query: 762 KSFNIALVAKNWWRIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIF 821
+ FN AL+AK WR+ + +L ++VF+ YF+ D L A RG RPSYAW SIL +
Sbjct: 858 QCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELL 917
Query: 822 QEGGRWKIGDGSQVDILHDQWLPQGV---PVIGSQDLMAEFGVSKVSHLIDHAAKSWKYA 878
+G R IG+G + + D+WL G P+ + + + KVS LID +++W
Sbjct: 918 MQGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVDL---KVSQLIDPTSRNWNLN 974
Query: 879 LVDFIFHPATVSHILKIHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSSTYS 938
++ +F V ILK PL D+ W + +G Y K+GY F+ K
Sbjct: 975 MLRDLFPWKDVEIILK-QRPLFFKEDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAK 1033
Query: 939 QPSLPAPLWKKFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCANEEETV 998
L+ K W P+ + W+ + +P+ L RG+ D C +C E ET+
Sbjct: 1034 VKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETI 1093
Query: 999 FHLFVSCPVAQNFWFGSPLSLRVHGFSSM----EDFLADFFRAADDD----ALALWQAGV 1050
H+ CP+A+ W + LS FS+ L D + D ++ W +
Sbjct: 1094 NHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPWI--L 1151
Query: 1051 YALWEMRNRVVFR-DGEIPVPVAAMIQRCSMLAAAPVSEMTVVPRPAPLLQAT-WARPPY 1108
+ LW+ RN ++F G I ++ + S T + L+ T W P
Sbjct: 1152 WFLWKNRNALLFEGKGSI---TTTLVDKAYEAYHEWFSAQTHMQNDEKHLKITKWCPPLP 1208
Query: 1109 GIYKLNFDAAVATTGEV-GFGLIVRNMLGEVLASAAQYLLHAASAILGEALVFRWSMQLT 1167
G K N A + G +VR+ G+VL + + S + + W+++
Sbjct: 1209 GELKCNIGFAWSKQHHFSGASWVVRDSQGKVLLHSRRSFNEVHSPYSAKIRSWEWALESM 1268
Query: 1168 IQMEFRRVLFETDCLQLFQLWKKPPDGRSYLSSI 1201
F RV+F + ++ Q KP + L I
Sbjct: 1269 THHHFDRVIFASSTHEIIQALHKPHEWPLLLGDI 1302
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase
Length = 1333
Score = 553 bits (1426), Expect = e-155
Identities = 379/1181 (32%), Positives = 574/1181 (48%), Gaps = 75/1181 (6%)
Query: 1 VLAVYGFPDDRNKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVA 60
V VYG P +KH W I R PW +GDFN IL +K GG
Sbjct: 103 VSCVYGNPAFSDKHLVWEKITRIGINRKEPWCMLGDFNPILHNGEKRGGPRRGDSSFLPF 162
Query: 61 TCACSDCALHVVDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHC 120
T C + + G FTW + ++ RLD N W +P + + +
Sbjct: 163 TDMLDSCDMLELPSIGNPFTW-GGKTNEMWIQSRLDRCFGNKNWFRFFPISNQEFLDKRG 221
Query: 121 SDHSPILLMCADRRKRKQSKREYM--FRFEE-LWLQKNEECKEVIAETWGRSLTE----V 173
SDH P+L+ + ++K EY FRF++ L+ Q N KE I + W S V
Sbjct: 222 SDHRPVLV------RLTKTKEEYRGNFRFDKRLFNQPN--VKETIVQAWNGSQRNENLLV 273
Query: 174 PDRLSDVSGLLGRWGKEQFGDLPRKISDGQALLQELQRKDQTKEVLMAINVAERDLDSLL 233
D+L L RW KE + +I+ +A L EL++ + ++ + DL
Sbjct: 274 LDKLKHCRSALSRWKKENNINSSTRITQARAAL-ELEQSSGFPRADLVFSL-KNDLCKAN 331
Query: 234 EQEEVWWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVL 293
EEV+W Q+SRA W+ GDKNT FFH R + I+ L D NG +D+ + +
Sbjct: 332 HDEEVFWSQKSRAKWMHSGDKNTSFFHASVKDNRGKQHIDQLCDVNGLFHKDEMNKGAIA 391
Query: 294 GDYFGGLFTSSNPEGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPGLD 353
YF LF S++P + RV+E+ L ++ E+ EA+F + + APG+D
Sbjct: 392 EAYFSDLFKSTDPSSFVDLFEDYQPRVTESMNNTLIAAVSKNEIREAVFAIRSSSAPGVD 451
Query: 354 GFPTLFYQKYWDIIGDDVSAFCLQV--------LQGVIPPGMINQTLLVLIPKIMKPEHA 405
GF F+QKYW II CLQV L G P N T L L+PK KP+
Sbjct: 452 GFTGFFFQKYWSII-------CLQVTKEIQNFFLLGYFPKSW-NFTHLCLLPKKKKPDKM 503
Query: 406 TQFRPISLCNVLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMK 465
T RPISLC+VL+KII+K + RL+ LPD++ QSAFV RLI DN L+ +E H ++
Sbjct: 504 TDLRPISLCSVLYKIISKIMVRRLQPFLPDLVSPNQSAFVAERLIFDNILIAHEVVHGLR 563
Query: 466 KRISGRNGMMTLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTE 525
S G + +K +MSKA+DRVEW++++ +L +GF WV IM + + + + + +
Sbjct: 564 THKSVSKGFIAIKSNMSKAFDRVEWNYVRALLDALGFHQKWVGWIMFMISSVSYSVLIND 623
Query: 526 ------IPSRVLLLLEAYVRVILFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVI 579
+PSR L + L +F+ E + L+ R+ +L GI+ + P I
Sbjct: 624 KAFGNIVPSRGLRQGDP-----LSPFLFVLCSEGLTHLMNRAERQGLLSGIRFSENGPAI 678
Query: 580 SHLLFADDSIIFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELK 639
HLLFADDS+ +A +E + +I Y +GQ IN DKS +++ V ++ ++
Sbjct: 679 HHLLFADDSLFMCKAVKEEVTVIKSIFKVYGDVTGQRINYDKSSITLGALVDEDCKVWIQ 738
Query: 640 QLLNVNAVESFDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSV 699
L + YLGLP K ++ +++KDR+ +L GW TLS G+E L+K+
Sbjct: 739 AELGITNEGGASTYLGLPECFSGSKVQLLDYIKDRLKTRLSGWFARTLSMGGKETLLKAF 798
Query: 700 VQAIPSYVMSCFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFR 759
A+ Y MSCF L + C ++ +S F+W KR W S +K+ SK +GGLGFR
Sbjct: 799 ALALLFYAMSCFKLTKTTCVNMTSAMSDFWWNALEHKRKTHWVSCEKMCLSKENGGLGFR 858
Query: 760 DFKSFNIALVAKNWWRIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSW 819
D +SFN AL+AK WR+ P +L A+ FK Y+ + D L A+ PSYAW SIL
Sbjct: 859 DIESFNQALLAKQAWRLLQFPNSLFARFFKSRYYDEEDFLDAELKATPSYAWRSILHGRD 918
Query: 820 IFQEGGRWKIGDGSQVDILHDQWLPQGVPVIGSQDLMAEFGVS---KVSHLIDHAAKSWK 876
+ +G R K+G+GS + D W+ P + L F V+ +V LI+ + +
Sbjct: 919 LLIKGFRKKVGNGSSTSVWMDPWIYDNDPRL---PLQKHFSVNLDLRVHDLINVEDRCRR 975
Query: 877 YALVDFIFHPATVSHILKIHLPLNGSVDTLMWPETVDGNYCSKSGY-IFVRKNFLGACSS 935
++ +F+PA + I+K + P+ D +W + G Y KSGY + + N
Sbjct: 976 RDRLEELFYPADIEIIVKRN-PVVSMDDFWVWLHSKSGEYSVKSGYWLAFQTNKPELIRE 1034
Query: 936 TYSQPSLPAPLWKKFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCANEE 995
QPS L +K W T P+ K WR++SS LP+ + RRGM +DP C VC E
Sbjct: 1035 ARVQPSTNG-LKEKIWSTLTSPKIKLFLWRILSSALPVAYQIIRRGMPIDPRCQVCGEEG 1093
Query: 996 ETVFHLFVSCPVAQNFWFGSPLSLRVHGFSSMEDFLADFF-------RAADDDALALWQA 1048
E++ H+ +C +A+ W S + GF + F + + W
Sbjct: 1094 ESINHVLFTCSLARQVWALSGVPTSQFGFQNSSIFANIQYLLELKGKGLIPEQIKKSWPW 1153
Query: 1049 GVYALWEMRNRVVFRDGEIPVPVAAM------IQR---CSMLAAAPVSEMTVVPRPAPLL 1099
++ LW+ R+++ F +G I P+ ++ +Q L A+ + TV P P
Sbjct: 1154 VLWRLWKNRDKLFF-EGTIFSPLKSIEKIRDDVQEWFLAQALVASVDAGETVCSAPCP-- 1210
Query: 1100 QATWARPPYGIYKLNFDAAVATTGEV-GFGLIVRNMLGEVL 1139
++W PP G K N + V G ++R+ G+VL
Sbjct: 1211 -SSWEPPPLGWVKCNISGVWSGKKRVCGGAWVLRDDHGKVL 1250
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 545 bits (1404), Expect = e-153
Identities = 335/992 (33%), Positives = 499/992 (49%), Gaps = 16/992 (1%)
Query: 1 VLAVYGFPDDRNKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVA 60
V VYG PD + + W I R G W GDFNDIL +K GG +
Sbjct: 67 VSCVYGDPDRSKRSQAWERISRIGVGRRDKWCMFGDFNDILHNGEKNGGPRRSDLDCKAF 126
Query: 61 TCACSDCALHVVDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHC 120
C L + G FTW R ++ RLD A N W +P + +
Sbjct: 127 NEMIKGCDLVEMPAHGNGFTWAGRRGDHW-IQCRLDRAFGNKEWFCFFPVSNQTFLDFRG 185
Query: 121 SDHSPILLMCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSL----TEVPDR 176
SDH P+L+ + Q FRF++ +L K E+ KE I TW R V DR
Sbjct: 186 SDHRPVLI----KLMSSQDSYRGQFRFDKRFLFK-EDVKEAIIRTWSRGKHGTNISVADR 240
Query: 177 LSDVSGLLGRWGKEQFGDLPRKISDGQALLQELQRKDQTKEVLMAINVAERDLDSLLEQE 236
L L W K+ + KI+ +A L++ Q + ++V ++DL +E
Sbjct: 241 LRACRKSLSSWKKQNNLNSLDKINQLEAALEKEQ--SLVWPIFQRVSVLKKDLAKAYREE 298
Query: 237 EVWWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVLGDY 296
E +WKQ+SR WL+ G++N+++FH Q R+R IE LKD NG +A V Y
Sbjct: 299 EAYWKQKSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAY 358
Query: 297 FGGLFTSSNPEGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPGLDGFP 356
FG LF SSNP G + + + RVSE L + +E++EA+F + P APG DG
Sbjct: 359 FGNLFKSSNPSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMS 418
Query: 357 TLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISLCNV 416
LF+Q YW +G+ V++ + I P N T L LIPK P RPISLC+V
Sbjct: 419 ALFFQHYWSTVGNQVTSEVKKFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSV 478
Query: 417 LFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGRNGMMT 476
L+KII+K +A RL+ LP+I+ TQSAFV RLI DN LV +E H +K + M
Sbjct: 479 LYKIISKIMAKRLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMA 538
Query: 477 LKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVLLLLEA 536
+K DMSKAYDRVEWS+L+ +L +GF WV+ IM + + + + + P +++L
Sbjct: 539 VKSDMSKAYDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRG 598
Query: 537 YVR-VILFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFADDSIIFARAN 595
+ L +F+ E + LL ++ W L GI+ + P++ HLLFADDS+ +A+
Sbjct: 599 LRQGDPLSPFLFVLCTEGLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKAS 658
Query: 596 TQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNVNAVESFDKYLG 655
+++ + IL Y A+GQ INL+KS ++ V + ++ L + YLG
Sbjct: 659 REQSLVLQKILKVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLG 718
Query: 656 LPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIPSYVMSCFILPD 715
LP K + +++KDR+ +KL W LS+ G+EVL+KSV A+P + MSCF LP
Sbjct: 719 LPECFSGSKVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPI 778
Query: 716 SLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSFNIALVAKNWWR 775
+ C ++E ++ F+W R + W SW++L K GGLGFRD +SFN AL+AK WR
Sbjct: 779 TTCENLESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWR 838
Query: 776 IYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIFQEGGRWKIGDGSQV 835
+ P+ LL+++ K YF D L A RPS+ W SIL + +G + ++GDG+ +
Sbjct: 839 LLHFPDCLLSRLLKSRYFDATDFLDAALSQRPSFGWRSILFGRELLSKGLQKRVGDGASL 898
Query: 836 DILHDQWL-PQGVPVIGSQDLMAEFGVSKVSHLIDHAAKSWKYALVDFIFHPATVSHILK 894
+ D W+ G ++L+ + + KV L++ W ++ +F P + I
Sbjct: 899 FVWIDPWIDDNGFRAPWRKNLIYDVTL-KVKALLNPRTGFWDEEVLHDLFLPEDILRIKA 957
Query: 895 IHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSSTYSQPSLPAPLWKKFWRTS 954
I P+ D +W G++ KS Y + S S L + W
Sbjct: 958 IK-PVISQADFFVWKLNKSGDFSVKSAYWLAYQTKSQNLRSEVSMQPSTLGLKTQVWNLQ 1016
Query: 955 AQPRCKEVAWRVVSSLLPIRAALHRRGMDVDP 986
P+ K W+V+S +LP+ L+ RGM + P
Sbjct: 1017 TDPKIKIFLWKVLSGILPVAENLNGRGMSLIP 1048
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 534 bits (1376), Expect = e-150
Identities = 337/1032 (32%), Positives = 501/1032 (47%), Gaps = 40/1032 (3%)
Query: 1 VLAVYGFPDDRNKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVA 60
V VYG PD + + W I R G W GDFNDIL +K GG +
Sbjct: 64 VSCVYGDPDRSKRSQAWERISRIGVGRRDKWCMFGDFNDILHNGEKNGGPRRSDLDCKAF 123
Query: 61 TCACSDCALHVVDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHC 120
C L + G FTW R ++ RLD A N W +P + +
Sbjct: 124 NEMIKGCDLVEMPAHGNGFTWAGRRGDHW-IQCRLDRAFGNKEWFCFFPVSNQTFLDFRG 182
Query: 121 SDHSPILLMCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSL----TEVPDR 176
SDH P+L+ + Q FRF++ +L K E+ KE I TW R V DR
Sbjct: 183 SDHRPVLI----KLMSSQDSYRGQFRFDKRFLFK-EDVKEAIIRTWSRGKHGTNISVADR 237
Query: 177 LSDVSGLLGRWGKEQFGDLPRKISDGQALLQELQRKDQTKEVLMAINVAERDLDSLLEQE 236
L L W K+ + KI+ +A L++ Q + ++V ++DL +E
Sbjct: 238 LRACRKSLSSWKKQNNLNSLDKINQLEAALEKEQ--SLVWPIFQRVSVLKKDLAKAYREE 295
Query: 237 EVWWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVLGDY 296
E +WKQ+SR WL+ G++N+++FH Q R+R IE LKD NG +A V Y
Sbjct: 296 EAYWKQKSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAY 355
Query: 297 FGGLFTSSNPEGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPGLDGFP 356
FG LF SSNP G + + + RVSE L + +E++EA+F + P APG DG
Sbjct: 356 FGNLFKSSNPSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMS 415
Query: 357 TLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISLCNV 416
LF+Q YW +G+ V++ + I P N T L LIPK P RPISLC+V
Sbjct: 416 ALFFQHYWSTVGNQVTSEVKKFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSV 475
Query: 417 LFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGRNGMMT 476
L+KII+K +A RL+ LP+I+ TQSAFV RLI DN LV +E H +K + M
Sbjct: 476 LYKIISKIMAKRLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMA 535
Query: 477 LKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVLLLLEA 536
+K DMSKAYDRVEWS+L+ +L +GF WV+ IM + + + + + P +++L
Sbjct: 536 VKSDMSKAYDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRG 595
Query: 537 YVR-VILFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFADDSIIFARAN 595
+ L +F+ E + LL ++ W L GI+ + P++ HLLFADDS+ +A+
Sbjct: 596 LRQGDPLSPFLFVLCTEGLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKAS 655
Query: 596 TQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNVNAVESFDKYLG 655
+++ + IL Y A+GQ INL+KS ++ V + ++ L + YLG
Sbjct: 656 REQSLVLQKILKVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLG 715
Query: 656 LPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIPSYVMSCFILPD 715
LP K + +++KDR+ +KL W LS+ G+EVL+KSV A+P + MSCF LP
Sbjct: 716 LPECFSGSKVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPI 775
Query: 716 SLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSFNIALVAKNWWR 775
+ C ++E ++ F+W R + W SW++L K GGLGFRD +SFN AL+AK WR
Sbjct: 776 TTCENLESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWR 835
Query: 776 IYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIFQEGGRWKIGDGSQV 835
+ P+ LL+++ K YF D L A RPS+ W SIL + +G + ++GDG+ +
Sbjct: 836 LLHFPDCLLSRLLKSRYFDATDFLDAALSQRPSFGWRSILFGRELLSKGLQKRVGDGASL 895
Query: 836 DILHDQWL-PQGVPVIGSQDLMAEFGVSKVSHLIDHAAKSWKYALVDFIFHPATVSHILK 894
+ D W+ G ++L+ + + KV L++ W ++ +F P + I
Sbjct: 896 FVWIDPWIDDNGFRAPWRKNLIYDVTL-KVKALLNPRTGFWDEEVLHDLFLPEDILRIKA 954
Query: 895 IHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSSTYSQPSLPAPLWKKFWRTS 954
I P+ D +W G++ KS Y + S S L + W
Sbjct: 955 IK-PVISQADFFVWKLNKSGDFSVKSAYWLAYQTKSQNLRSEVSMQPSTLGLKTQVWNLQ 1013
Query: 955 AQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCANEEETVFHLFVSCPVAQNFWFG 1014
P+ K W+ VC E+ H CP+++ W
Sbjct: 1014 TDPKIKIFLWK------------------------VCGELGESTNHTLFLCPLSRQIWAL 1049
Query: 1015 SPLSLRVHGFSS 1026
S GFS+
Sbjct: 1050 SDYPFPPDGFSN 1061
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 533 bits (1373), Expect = e-149
Identities = 333/1029 (32%), Positives = 510/1029 (49%), Gaps = 37/1029 (3%)
Query: 38 NDILSPADKLGGDLPDMGRMQVATCACSDCALHVVDFTGRRFTWTNNRPKPGTVEERLDY 97
N+IL ++K GG D G S L + ++G F+W R V +RLD
Sbjct: 36 NEILDNSEKRGGPPRDQGSFIDFRSFISKNGLWDLKYSGNPFSWRGMR-YDWFVRQRLDR 94
Query: 98 ALVNDAWESLWPSNKVCHVHRHCSDHSPILLMCADRRKRKQSKREYMFRFEELWLQKNEE 157
A+ N++W +PS + ++ SDH P+++ + R KR FRF+ L+ N+
Sbjct: 95 AMSNNSWLESFPSGRSEYLRFEGSDHRPLVVFVDEARV----KRRGQFRFDNR-LRDNDV 149
Query: 158 CKEVIAETWGRSL-TEVPDRLSDVSGLLGRWGKEQFGDLPRKISDGQALLQELQRKDQTK 216
+I ETW + V +++ + W + Q + I Q L+E D
Sbjct: 150 VNALIQETWTNAGDASVLTKMNQCRREIINWTRLQNLNSAELIEKTQKALEEALTADPPN 209
Query: 217 EVLMAINVAERDLDSLLEQEEVWWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLK 276
I L+ + EE +WKQRSR WL GD+NT +FH RR +N + V++
Sbjct: 210 PT--TIGALTATLEHAYKLEEQFWKQRSRVLWLHSGDRNTGYFHAVTRNRRTQNRLTVME 267
Query: 277 DDNGREVEDDADIARVLGDYFGGLFTSSNPEGIEETTNLVAGRVSETHLTVLGEPFTREE 336
D NG ++ I++++ YF +FTS + + VS+ L EE
Sbjct: 268 DINGVAQHEEHQISQIISGYFQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLTRIPNDEE 327
Query: 337 VEEALFQMHPTKAPGLDGFPTLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLI 396
V++A+F ++ +KAPG DGF FY YW II DV P +N+T + LI
Sbjct: 328 VKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNETHIRLI 387
Query: 397 PKIMKPEHATQFRPISLCNVLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALV 456
PK + P +RPI+LCN+ +KI+ K + R+++ILP +I + QSAFVPGR+I DN L+
Sbjct: 388 PKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLISENQSAFVPGRVISDNVLI 447
Query: 457 VYECFHFMKKRISGRNGMMTLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPL 516
+E HF++ + ++ M +K DMSKAYDRVEW FL+ VLQ+ GF W+ ++
Sbjct: 448 THEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVLECVTS 507
Query: 517 LGFPLCLTEIPS-RVLLLLEAYVRVILFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANR 575
+ + + P +V+ L +F+ E S L R+ L L G++V+
Sbjct: 508 VSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGVRVSIN 567
Query: 576 APVISHLLFADDSIIFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGF 635
P ++HLLFADD++ F++++ + + ILS Y +ASGQ IN KS ++ S P++
Sbjct: 568 GPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHKSSVTFSSKTPRSVK 627
Query: 636 NELKQLLNVNAVESFDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVL 695
++K++L + KYLGLP G+ K IF + D++ +K W LS+AG++V+
Sbjct: 628 GQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHSWASRFLSQAGKQVM 687
Query: 696 IKSVVQAIPSYVMSCFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGG 755
+K+V+ ++P Y MSCF LP +LC I+ +++RF+W D R W +W KLT K GG
Sbjct: 688 LKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTSWVAWSKLTNPKNAGG 747
Query: 756 LGFRDFKSFNIALVAKNWWRIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSIL 815
LGFRD + N +L+AK WR+ PE+LL+++ G Y + K +PS+ W SI+
Sbjct: 748 LGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMECKLPSQPSHGWRSII 807
Query: 816 QSSWIFQEGGRWKIGDGSQVDILHDQWLPQGVPVIGSQDLMAEFGVSKVSHLIDHAAKSW 875
I +EG W I +G +V I +D WL P++ + E +VS LI+ W
Sbjct: 808 AGREILKEGLGWLITNGEKVSIWNDPWLSISKPLVPIGPALREHQDLRVSALINQNTLQW 867
Query: 876 KYALVDFIFHPATVSHILKIHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSS 935
+ + I P + I ++ P + VD L W G Y S+SGY
Sbjct: 868 DWNKIAVIL-PNYENLIKQLPAPSSRGVDKLAWLPVKSGQYTSRSGY------------G 914
Query: 936 TYSQPSLPAPL----WK-KFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPV 990
S S+P P W+ W+ P+ K + W+ LP+ L RR + C
Sbjct: 915 IASVASIPIPQTQFNWQSNLWKLQTLPKIKHLMWKAAMEALPVGIQLVRRHISPSAACHR 974
Query: 991 CANEEETVFHLFVSCPVAQNFWFGSPL-SLRVHGFSSMEDFLADFFRA-------ADDDA 1042
C E T HLF C A W +PL V SSM D L+ +A A
Sbjct: 975 CGAPESTT-HLFFHCEFAAQVWELAPLQETTVPPGSSMLDALSLLKKAIILPPTGVTSAA 1033
Query: 1043 LALWQAGVY 1051
L W G+Y
Sbjct: 1034 LFPWICGIY 1042
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 521 bits (1342), Expect = e-146
Identities = 289/770 (37%), Positives = 419/770 (53%), Gaps = 54/770 (7%)
Query: 236 EEVWWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVLGD 295
EE +W Q+SR+ W+K GD N+++FH QRR RN I L D+NG+ +D D+ +
Sbjct: 182 EEQYWYQKSRSLWMKVGDNNSKYFHALTKQRRARNRIIGLHDENGKWFAEDKDVQHIAVS 241
Query: 296 YFGGLFTSSNPEGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPGLDGF 355
YF LF SNP+ I E+ + V +++ L P T +EV ALF MHP KAPG DG
Sbjct: 242 YFETLFNKSNPQNIAESLSEVKTLITDQINDFLTTPATEDEVRAALFLMHPEKAPGPDGM 301
Query: 356 PTLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISLCN 415
LF+QK W I D+ LQ + +N T + LIPK +P T+ RPISLCN
Sbjct: 302 TALFFQKPWATIKMDMLFLVNSFLQDGVFDKQLNTTNICLIPKTERPTRMTELRPISLCN 361
Query: 416 VLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGRNGMM 475
V +KII+K + RLK ILP +I +T SAFV GRLI DN L+ E FH ++ S + M
Sbjct: 362 VGYKIISKILCQRLKKILPSLISETHSAFVEGRLISDNILIAQEMFHGLRTNPSCKGKFM 421
Query: 476 TLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVLLLLE 535
+K DMSKAYDRVEW+F++ +L+KMGF W+S IM C+T + RVLL +
Sbjct: 422 AIKTDMSKAYDRVEWNFIEELLKKMGFCEKWISWIM---------WCITTVQYRVLLNGQ 472
Query: 536 AYVRVI----------LFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFA 585
++ L +F+ E + ++ ++ GIKVA +P +SHLLFA
Sbjct: 473 PRGLIVPKRGLRQGDPLSPYLFILCTEVLIANIRKAEQEKLITGIKVATASPSVSHLLFA 532
Query: 586 DDSIIFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNVN 645
+DS+ F +AN ++ +L IL YE SGQ+IN KS + V + E+K L ++
Sbjct: 533 NDSLFFCKANKEQCGVILGILKQYEAVSGQMINFSKSSIQFGHKVGDDIKAEIKSALGIH 592
Query: 646 AVESFDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIPS 705
++ YLGLP +G KTRIF+FV+DR+ ++ GW LS+ G+EV+IKSVV +P+
Sbjct: 593 SIGGMGSYLGLPESLGGSKTRIFSFVRDRLQTRINGWSAKFLSKGGKEVMIKSVVAVLPT 652
Query: 706 YVMSCFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSFN 765
YVMSCF LP ++ + + V++F+W D + RG+ W +W KL SK DGGLGFR FN
Sbjct: 653 YVMSCFRLPKTITSKLTSAVAKFWWSSDGESRGMHWMAWNKLCSSKADGGLGFRSVNDFN 712
Query: 766 IALVAKNWWRIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIFQEGG 825
AL+AK WR+ T P++L A+VFKG YF + + L + Y PSY W SI+ + + ++G
Sbjct: 713 SALLAKQLWRLITVPDSLFAKVFKGRYFRKSNPLDKLKSYSPSYGWRSIISARSLVKKGL 772
Query: 826 RWKIGDGSQVDILHDQWLPQGVPVIGSQDLMAEFGVSKVSHLIDHAAKSWKYALVDFIFH 885
++G G+ + + D W+P P + KV++LID + W ++ IF
Sbjct: 773 INRVGSGASISVWEDPWIPAQFPRPAISNGSVIDPSLKVNNLIDSRSNFWNIDFLNEIFV 832
Query: 886 PATVSHILKIHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSSTYSQPSLPAP 945
P V I +HL + D+L +L A
Sbjct: 833 PEDVLLISAMHLGSSTKEDSL-------------------------------DIKTLKAH 861
Query: 946 LWKKFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCANEE 995
+WK P+ + W+V+S +P+ L +RG++ D C CA E
Sbjct: 862 IWK----VQCPPKLRHFLWQVLSGCVPVTENLRKRGINCDSGCARCATGE 907
Score = 38.5 bits (88), Expect = 1.5
Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 1136 GEVLASAAQYLLHAASAILGEALVFRWSMQLTIQMEFRRVLFETDCLQLFQLWKKP---P 1192
GE A L + S + E W+M+ I + + V F TDC L ++ P P
Sbjct: 906 GEPPTMGAANLRRSLSPLHTEVEALLWAMKCMIGADSQDVAFFTDCSDLVKMVSSPTEWP 965
Query: 1193 DGRSYLSSIVGDCFMLSRFFDYVDLSFVRRRGNSVADFLA 1232
+YL + D F Y LS + R N AD LA
Sbjct: 966 TFSAYLEELQSD----REEFTYFSLSLISRNANVKADNLA 1001
>ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|49328177|gb|AAT58873.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1264
Score = 507 bits (1305), Expect = e-141
Identities = 281/758 (37%), Positives = 436/758 (57%), Gaps = 30/758 (3%)
Query: 63 ACSDCALHVVDFTGRRFTWTNNRPKPGT-VEERLDYALVNDAWESLWPSNKVCHVHRHCS 121
A DC LH + F G FTW N+ ++ERLD A+ N AW + +P +V + S
Sbjct: 503 ALEDCQLHDLGFVGDAFTWRNHHHLASNYIKERLDRAVANGAWRARFPLVRVINGDPRHS 562
Query: 122 DHSPILLMCADRRKRKQSKR-EYMFRFEELWLQKNEECKEVIAETWGRSLTEVPDRLSDV 180
DH +++ K++ + E M +FE WL++ EEC+ + E W +L RL ++
Sbjct: 563 DHRSVIVETGATEKQQWGQPLEIMQKFEARWLEE-EECQARVEEAWENALEGGQTRLMEI 621
Query: 181 SGL----LGRWGKEQFGDLPRKISDGQALLQELQRKDQTKEVLMAINVAERDLDSLLEQE 236
L W + G+L +++ + + L++ +R+ + + ++ L+ LL+Q+
Sbjct: 622 QSRVLKELWAWDRTVLGELKKRVKNLRKELEKCRREPISNRQVNREHLLRYKLERLLDQQ 681
Query: 237 EVWWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVLGDY 296
++WKQR+ ++WL GD+NT+FFH +A++++KRN I+ L+D +G V + + + +
Sbjct: 682 HIYWKQRAHSTWLTKGDRNTKFFHAQASEKKKRNTIQKLQDGHGGLVAGN-QLKSFISNQ 740
Query: 297 FGGLFTSSNPEGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPGLDGFP 356
+ LF S+ ++ V RV+ L P+ REEV AL M KAPG DG P
Sbjct: 741 YQQLFRSNGCSQMDAVLQCVQARVTPEMREGLAAPYQREEVWVALKDMGDLKAPGADGIP 800
Query: 357 TLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISLCNV 416
+FY+K+ + GD V L VL G P N T++VLIPK +P+ RPISLCNV
Sbjct: 801 AIFYKKFLSLAGDKVKDEVLAVLNGGDMPQGWNDTVVVLIPKTKQPDTLKDLRPISLCNV 860
Query: 417 LFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGRNGMMT 476
+K+I+K I NRLK++L +II +QSAFVP RLI N L+ YE H++ +R G+NG+
Sbjct: 861 AYKLISKVIVNRLKVVLLEIISPSQSAFVPRRLITYNVLLAYELTHYLNQRKKGKNGVAA 920
Query: 477 LKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVLLLLEA 536
+KLDMSKAYDRVEW FL+ ++ ++GF WV+L+M C+T + R+ + E
Sbjct: 921 IKLDMSKAYDRVEWDFLRHMMLRLGFHDQWVNLVMK---------CVTSVTYRIKINGEH 971
Query: 537 YVRVI----------LFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFAD 586
++ L +F+ E S LL ++ + GIKV P I+HL FAD
Sbjct: 972 SDQIYPQRGLRQGDPLSPYLFIICAEGLSALLQKAQADGKIEGIKVCRDTPRINHLFFAD 1031
Query: 587 DSIIFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNVNA 646
DS++ RA +A+ + +L+ YE ASGQVIN DKS + S N Q+ E++ L +N
Sbjct: 1032 DSLVLMRAGQNDAQELRRVLNIYEVASGQVINKDKSSVLFSPNTLQSDRMEVRSALCINQ 1091
Query: 647 VESFDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIPSY 706
++YLGLP IGK + + F ++K +VW +++GW+E LS+AG+E+L+K+V QAIP+Y
Sbjct: 1092 EAKNERYLGLPVSIGKSRRKAFEYIKRKVWLRIQGWQEKLLSKAGKEILVKAVAQAIPTY 1151
Query: 707 VMSCFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSFNI 766
MSCF L LC +I M+S+++W + + + W SW+K+T K GG GFRD FN+
Sbjct: 1152 AMSCFDLTKGLCDEINSMISKWWWSQNDKENKIHWLSWEKMTLPKKLGGPGFRDLHLFNM 1211
Query: 767 ALVAKNWWRIYTQPETLLAQVF---KGVYFAQGDLLGA 801
A++A+ WR+ ++L QVF K + GDLL +
Sbjct: 1212 AMLARQAWRLLLNVDSLCGQVFVDEKIEHTGLGDLLSS 1249
>gb|AAX95232.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62733010|gb|AAX95129.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1324
Score = 500 bits (1288), Expect = e-139
Identities = 286/783 (36%), Positives = 425/783 (53%), Gaps = 31/783 (3%)
Query: 4 VYGFPDDRNKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVATCA 63
VYG P K TW +R WLC+GDFN++L +K G M
Sbjct: 552 VYGEPRSDKKDLTWKALRTLNATKGELWLCVGDFNEVLFSWEKERGHAKAQSCMDRFRQT 611
Query: 64 CSDCALHVVDFTGRRFTWTNNR-PKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHCSD 122
C+L + FTG FTW NN + G + ERLD A+ + W +PS +V SD
Sbjct: 612 LDCCSLSNLGFTGDPFTWRNNWCVRDGYIRERLDRAVADSDWCCRFPSFRVRKGDPRHSD 671
Query: 123 HSPILLMCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSLT----EVPDRLS 178
H P+++ ++ + + FRFE W ++ E C ++ W S+ +V D +
Sbjct: 672 HHPVIVTTSNEVIWNGGRSKPGFRFEAGWARE-EHCAPIVENAWKLSVGPRGGKVMDAIR 730
Query: 179 DVSGLLGRWGKEQFGDLPRKISDGQALLQELQRKDQTKEVLMAINVAERDLDSLLEQEEV 238
+V+ L W K GDL ++I + L+ +R + V + LD L EQ E+
Sbjct: 731 EVAANLWDWSKNFLGDLEKRIKKAKQALEAHRRSPISSSTASREAVLKYRLDKLEEQREL 790
Query: 239 WWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVLGDYFG 298
+W+QR+ WL+ GD+NT+FFH+ A++R+KRN I+ L+ D+G + D+A ++ +++
Sbjct: 791 YWRQRANQHWLEKGDRNTKFFHECASERKKRNKIKKLRRDDGEVITDEAGSLSLISEFYK 850
Query: 299 GLFTSSNPEGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAP-GLDGFPT 357
LFT+ P ++E V RV+ T L + T EE+++AL + KAP G DG P
Sbjct: 851 QLFTAGVPLNLDELLQNVPKRVTSTMNDELMKGVTTEEIKKALDSIGDLKAPPGSDGMPA 910
Query: 358 LFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISLCNVL 417
LFY+++W+ +GDD+ L G P N T++VLIPK+ PE RPISLCNV+
Sbjct: 911 LFYKQFWECVGDDIVHEVKDFLGGGEMPDSWNDTVVVLIPKVPNPERIKDLRPISLCNVV 970
Query: 418 FKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGRNGMMTL 477
+KI +K +ANRLK +L +II Q AFVP R+I DN L+ YE HF+K + G G +
Sbjct: 971 YKIASKVLANRLKPLLSEIISPIQIAFVPQRMITDNILLAYELTHFLKTKRRGSVGFAAV 1030
Query: 478 KLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVLLLLEAY 537
K MSKAYDRVEW FL+ ++ K+GF +WV ++M C+T + R+ + E
Sbjct: 1031 KQGMSKAYDRVEWGFLEKMMLKLGFDRNWVFIVMK---------CVTSVTYRIKVNGEFT 1081
Query: 538 VRV----------ILFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFADD 587
++ + +F E S LL + L IKV AP I+HLLFADD
Sbjct: 1082 EQINPTGGLRQGDPISPYLFFICAEGFSTLLNAAEERGDLSVIKVCQNAPSINHLLFADD 1141
Query: 588 SIIFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNVNAV 647
S++ + + A C+ N+LS YER SG+ IN +KS + SRN+ + L++
Sbjct: 1142 SLLLLKTDEGSAACLQNVLSLYERCSGETINKEKSSIMFSRNIKEVNKQIFMGALDIGVG 1201
Query: 648 ESFDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIPSYV 707
+KYLGLP +G+ K + +++K+RVWKK++GWKE LSRAG++VLIK+V QAIP++
Sbjct: 1202 AWNEKYLGLPVYMGRSKAKTSSYLKERVWKKIQGWKEKLLSRAGKDVLIKAVAQAIPAFA 1261
Query: 708 MSCFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFR-----DFK 762
MSCF L LC +I ++ RF+W + + W +W+ L K GG FR D
Sbjct: 1262 MSCFNLTKGLCDEITSLICRFFWAQQERENKMHWIAWEHLCSRKEKGGFFFRRTTAGDLP 1321
Query: 763 SFN 765
FN
Sbjct: 1322 EFN 1324
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411729|pir||H84542 hypothetical protein
At2g16680 [imported] - Arabidopsis thaliana
Length = 1319
Score = 497 bits (1280), Expect = e-139
Identities = 347/1188 (29%), Positives = 551/1188 (46%), Gaps = 64/1188 (5%)
Query: 31 WLCIGDFNDILSPADKLGGDLPDMGRMQVATCACSDCALHVVDFTGRRFTWTNNRPKPGT 90
W IGDFNDILS KLGG + Q +C +H + +G FTW R
Sbjct: 94 WCMIGDFNDILSNDGKLGGPSRLISSFQPFKNMLLNCDMHQMGSSGNSFTWGGTR-NDQW 152
Query: 91 VEERLDYALVNDAWESLWPSNKVCHVHRHCSDHSPILLMCADRRKRKQSKREYMFRFEEL 150
++ +LD N W +++ ++ + + S H P+L+ + ++ + + Y RF E
Sbjct: 153 IQCKLDRCFGNSEWFTMFSNSHQWFLEKLGSHHRPVLVNFVNDQEVFRGQFCYDKRFAE- 211
Query: 151 WLQKNEECKEVIAETW-GRSLTEVPD---RLSDVSGLLGRWGKEQFGDLPRKISDGQALL 206
+ +C +W G +++V R+ + W K + +I ++ L
Sbjct: 212 ----DPQCAASTLSSWIGNGISDVSSSMLRMVKCRKAISGWKKNSDFNAQNRILRLRSEL 267
Query: 207 QELQRKDQTKEVLMAINVAERDLDSLLEQEEVWWKQRSRASWLKHGDKNTRFFHQKANQR 266
E K + I+V + L +EE +W+ +S+ WL GD+N++FF
Sbjct: 268 DE--EKSKQYPCWSRISVIQTQLGVAFREEESFWRLKSKDKWLFGGDRNSKFFQAMVKAN 325
Query: 267 RKRNLIEVLKDDNGREVEDDADIARVLGDYFGGLFTSSNPEGIEETTNLVAGRVSETHLT 326
R +N + L D+NG E + + + YF LF SS P + + RVSE
Sbjct: 326 RTKNSLRFLVDENGNEHTLNREKGNIASVYFENLFMSSYPANSQSALDGFKTRVSEEMNQ 385
Query: 327 VLGEPFTREEVEEALFQMHPTKAPGLDGFPTLFYQKYWDIIGDDVSAFCLQVLQGVIPPG 386
L + T E+ A+F ++ AP +K G D GV+P
Sbjct: 386 ELTQAVTELEIHSAVFSINVESAP----------EKLECCQGSDYIEILGFFETGVLPQE 435
Query: 387 MINQTLLVLIPKIMKPEHATQFRPISLCNVLFKIITKTIANRLKIILPDIICQTQSAFVP 446
N T L LIPK P+ + RPISLC+VL+KII+K ++ +LK LP I+ +QSAF
Sbjct: 436 W-NHTHLYLIPKFTNPQRMSDIRPISLCSVLYKIISKILSFKLKKHLPSIVSPSQSAFFA 494
Query: 447 GRLIIDNALVVYECFHFMKKRISGRNGMMTLKLDMSKAYDRVEWSFLQGVLQKMGFPPSW 506
RLI DN L+ +E H ++ M K DMSKAYDRVEWSFLQ +L +GF W
Sbjct: 495 ERLISDNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAYDRVEWSFLQEILVALGFNDKW 554
Query: 507 VSLIMSVSPLLGFPLCLTEIPSRVLLLLEAYVRVILFR----------LIFLSYVERCSQ 556
+S IM C+T + VL+ + + + R +F+ E
Sbjct: 555 ISWIMG---------CVTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEALIH 605
Query: 557 LLLRSVWLLMLHGIKVANRAPVISHLLFADDSIIFARANTQEAECVLNILSTYERASGQV 616
+L ++ + GI+ P ++HLLF DD+ + RA + E ++ LS Y SGQ+
Sbjct: 606 ILQQAENSKKVSGIQFNGSGPSVNHLLFVDDTQLVCRATKSDCEQMMLCLSQYGHISGQL 665
Query: 617 INLDKSQLSVSRNVPQNGFNELKQLLNVNAVESFDKYLGLPTMIGKFKTRIFNFVKDRVW 676
IN++KS ++ V ++ +K ++ KYLGLP + K +F ++K+++
Sbjct: 666 INVEKSSITFGVKVDEDTKRWIKNRSGIHLEGGTGKYLGLPENLSGSKQDLFGYIKEKLQ 725
Query: 677 KKLKGWKESTLSRAGREVLIKSVVQAIPSYVMSCFILPDSLCADIERMVSRFYWGGDVDK 736
L GW + TLS+ G+E+L+KS+ A+P Y+M+CF LP LC + ++ F+W
Sbjct: 726 SHLSGWYDKTLSQGGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSVMMDFWWNSMEFS 785
Query: 737 RGLQWASWKKLTRSKFDGGLGFRDFKSFNIALVAKNWWRIYTQPETLLAQVFKGVYFAQG 796
+ W KKLT K GG GF+D + FN AL+AK WR+++ +++++Q+FK YF
Sbjct: 786 NKIHWIGGKKLTLPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYFMNT 845
Query: 797 DLLGAKRGYRPSYAWSSILQSSWIFQEGGRWKIGDGSQVDILHDQWLPQGVP--VIGSQD 854
D L A++G RPSY W SIL + G + IG+G Q ++ D+WL G +
Sbjct: 846 DFLNARQGTRPSYTWRSILYGRELLNGGLKRLIGNGEQTNVWIDKWLFDGHSRRPMNLHS 905
Query: 855 LMAEFGVSKVSHLIDHAAKSWKYALVDFIFHPATVSHILKIHLPLNGSVDTLMWPETVDG 914
LM KVSHLID ++W + +FH V I+ PL S D+ W T +G
Sbjct: 906 LMNIH--MKVSHLIDPLTRNWNLKKLTELFHEKDVQLIMH-QRPLISSEDSYCWAGTNNG 962
Query: 915 NYCSKSGY-IFVRKNFLGACSSTYSQPSLPAPLWKKFWRTSAQPRCKEVAWRVVSSLLPI 973
Y KSGY R+ F PS+ PL+ K W P+ K W+ + L +
Sbjct: 963 LYTVKSGYERSSRETFKNLFKEADVYPSV-NPLFDKVWSLETVPKIKVFMWKALKGALAV 1021
Query: 974 RAALHRRGMDVDPLCPVCANEEETVFHLFVSCPVAQNFWFGSPLSLRVHGF-SSMEDFLA 1032
L RG+ C C E ET+ HL CP A+ W S + GF +S+ +
Sbjct: 1022 EDRLRSRGIRTADGCLFCKEEIETINHLLFQCPFARQVWALSLIQAPATGFGTSIFSNIN 1081
Query: 1033 DFFRAADDDALALWQAGV-----YALWEMRNRVVFRDGEIPVP--VAAMIQRCSM-LAAA 1084
+ + + + V + +W+ RN+ +F+ + VA + C++ + A
Sbjct: 1082 HVIQNSQNFGIPRHMRTVSPWLLWEIWKNRNKTLFQGTGLTSSEIVAKAYEECNLWINAQ 1141
Query: 1085 PVSEMTVVPRPAPLLQATWARPPYGIYKLNFDAAVATTGEV-GFGLIVRNMLGEVLASAA 1143
S V P + W PP G K N A + ++ G ++R+ +G+VL +
Sbjct: 1142 EKSSGGVSPS-----EHKWNPPPAGELKCNIGVAWSRQKQLAGVSWVLRDSMGQVLLHSR 1196
Query: 1144 QYLLHAASAILGEALVFRWSMQLTIQMEFRRVLFETDCLQLFQLWKKP 1191
+ S + + W+++ F +V F + + KP
Sbjct: 1197 RSYSQVYSLFDAKIKSWDWALESMDHFHFDKVTFAATSHDIIKALHKP 1244
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.324 0.139 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,250,807,082
Number of Sequences: 2540612
Number of extensions: 98777802
Number of successful extensions: 265696
Number of sequences better than 10.0: 1151
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 475
Number of HSP's that attempted gapping in prelim test: 262111
Number of HSP's gapped (non-prelim): 2033
length of query: 1259
length of database: 863,360,394
effective HSP length: 140
effective length of query: 1119
effective length of database: 507,674,714
effective search space: 568088004966
effective search space used: 568088004966
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 81 (35.8 bits)
Lotus: description of TM0129.4