BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0083.3
(287 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 77 7e-13
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 74 6e-12
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 72 2e-11
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 72 2e-11
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 68 3e-10
gb|AAD24652.1| putative non-LTR retroelement reverse transcripta... 67 4e-10
gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cul... 64 4e-09
gb|AAG50806.1| unknown protein [Arabidopsis thaliana] gi|2540301... 64 6e-09
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana] 63 8e-09
emb|CAB78261.1| putative reverse transcriptase [Arabidopsis thal... 63 1e-08
emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultiva... 63 1e-08
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 62 1e-08
gb|AAX95804.1| retrotransposon protein, putative, unclassified [... 62 2e-08
pir||C86428 hypothetical protein T4K22.11 - Arabidopsis thaliana... 62 2e-08
emb|CAB78214.1| putative protein [Arabidopsis thaliana] gi|45394... 62 2e-08
gb|AAV43906.1| hypothetical protein [Oryza sativa (japonica cult... 62 2e-08
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 61 3e-08
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 61 3e-08
gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (jap... 61 4e-08
gb|AAG50886.1| hypothetical protein [Arabidopsis thaliana] gi|25... 60 5e-08
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411805|pir||C84554 hypothetical protein
At2g17610 [imported] - Arabidopsis thaliana
Length = 773
Score = 76.6 bits (187), Expect = 7e-13
Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 10/184 (5%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWK-------LGSRIFITKYLKGSSIFSY 125
V W ++ PK GGL +R ++ N++LL K +W+ L +R+F KY +
Sbjct: 294 VAWSKLNDPKKMGGLAIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFPKERLLDA 353
Query: 126 ELTGSSSYVWKGLVKAFSVLRDGLSFAIHDGCT-SFWYSDWTGLGKLCALVPFVHISDTA 184
+ T SSY WK ++ ++ GL + +G W +W L V +
Sbjct: 354 KATSQSSYAWKSILHGTKLISRGLKYIAGNGNNIQLWKDNWLPLNPPRPPVGTCDSIYSQ 413
Query: 185 LTISDVWVEGSWNLSMLYTELPDPYKPTITSMQGPSHETVDDCWVW-NSNPAGYSCSDAY 243
L +SD+ +EG WN +L + P I +++ PS +D W ++ YS Y
Sbjct: 414 LKVSDLLIEGRWNEDLLCKLIHQNDIPHIRAIR-PSITGANDAITWIYTHDGNYSVKSGY 472
Query: 244 QWLR 247
LR
Sbjct: 473 HLLR 476
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 73.6 bits (179), Expect = 6e-12
Identities = 51/168 (30%), Positives = 73/168 (43%), Gaps = 21/168 (12%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWK-------LGSRIFITKYLKGSSIFSY 125
V W ++ PKN GGLG R N SLL KL W+ L SRI + KY SS
Sbjct: 734 VAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMEC 793
Query: 126 ELTGSSSYVWKGLVKAFSVLRDGLSFAIHDG-CTSFWYSDWTGLGKLCALVPFVHISDTA 184
+L S+ W+ ++ +L++GL + I +G S W W + K P V I
Sbjct: 794 KLPSQPSHGWRSIIAGREILKEGLGWLITNGEKVSIWNDPWLSISK-----PLVPIGPAL 848
Query: 185 LTISDVWVEG-------SWNLSMLYTELPDPYKPTITSMQGPSHETVD 225
D+ V W+ + + LP+ Y+ I + PS VD
Sbjct: 849 REHQDLRVSALINQNTLQWDWNKIAVILPN-YENLIKQLPAPSSRGVD 895
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 72.0 bits (175), Expect = 2e-11
Identities = 58/231 (25%), Positives = 98/231 (42%), Gaps = 16/231 (6%)
Query: 50 VLFDYWRRSDEGRSHLGTVVRDCVNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWK--- 106
V+ D+W S + + + ++W+++ LPK+QGG G + + N +LL K AW+
Sbjct: 799 VMMDFWWNSMQQKRKI-----HWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQ 853
Query: 107 ----LGSRIFITKYLKGSSIFSYELTGSSSYVWKGLVKAFSVLRDGLSFAIHDGCTSF-W 161
L SR+F ++Y S S SY W+ ++ +L GL I +G +F W
Sbjct: 854 EKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVW 913
Query: 162 YSDWTGLGKLCALVPFVHISDTALTISDVW--VEGSWNLSMLYTELPDPYKPTITSMQGP 219
W G + + L +S + +WNL+ML P I +
Sbjct: 914 TDKWLHDGSNRRPLNRRRFINVDLKVSQLIDPTSRNWNLNMLRDLFPWKDVEIILKQRPL 973
Query: 220 SHETVDDCWVWNSNPAGYSCSDAYQWLRDWTVFRVLSVLGSMSSIISLFEE 270
+ CW+ + N YS Y++L R+ S+ SLF++
Sbjct: 974 FFKEDSFCWLHSHNGL-YSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDK 1023
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 72.0 bits (175), Expect = 2e-11
Identities = 58/231 (25%), Positives = 98/231 (42%), Gaps = 16/231 (6%)
Query: 50 VLFDYWRRSDEGRSHLGTVVRDCVNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWK--- 106
V+ D+W S + + + ++W+++ LPK+QGG G + + N +LL K AW+
Sbjct: 820 VMMDFWWNSMQQKRKI-----HWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQ 874
Query: 107 ----LGSRIFITKYLKGSSIFSYELTGSSSYVWKGLVKAFSVLRDGLSFAIHDGCTSF-W 161
L SR+F ++Y S S SY W+ ++ +L GL I +G +F W
Sbjct: 875 EKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVW 934
Query: 162 YSDWTGLGKLCALVPFVHISDTALTISDVW--VEGSWNLSMLYTELPDPYKPTITSMQGP 219
W G + + L +S + +WNL+ML P I +
Sbjct: 935 TDKWLHDGSNRRPLNRRRFINVDLKVSQLIDPTSRNWNLNMLRDLFPWKDVEIILKQRPL 994
Query: 220 SHETVDDCWVWNSNPAGYSCSDAYQWLRDWTVFRVLSVLGSMSSIISLFEE 270
+ CW+ + N YS Y++L R+ S+ SLF++
Sbjct: 995 FFKEDSFCWLHSHNGL-YSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDK 1044
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 67.8 bits (164), Expect = 3e-10
Identities = 48/188 (25%), Positives = 85/188 (44%), Gaps = 16/188 (8%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWK-------LGSRIFITKYLKGSSIFSY 125
++W ++ LPKN GGLG R N+++L K W+ L SR+ KY F
Sbjct: 1040 LSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRP 1099
Query: 126 ELTGSSSYVWKGLVKAFSVLRDGLSFAIHDGC-TSFWYSDWTGLGKLCALVPFVHISDTA 184
+ T + SY W+ + K VL++G+ + + DG + W W G + P
Sbjct: 1100 KQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADPWIPRG--WSRKPMTPRGANL 1157
Query: 185 LTISDVWVE---GSWNLSMLYTELPDPYKPTITSMQGPSHETVDDCWVWNSNPAG-YSCS 240
+T + ++ G+W+ +L + I S+ P H ++D W+ + G ++
Sbjct: 1158 VTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSI--PVHVEMEDVLAWHFDARGCFTVK 1215
Query: 241 DAYQWLRD 248
AY+ R+
Sbjct: 1216 SAYKVQRE 1223
>gb|AAD24652.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411174|pir||H84469 hypothetical protein
At2g05550 [imported] - Arabidopsis thaliana
Length = 977
Score = 67.4 bits (163), Expect = 4e-10
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 9/108 (8%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWKLGSR------IFITKYLKGSSIFSY- 125
V+W + PK +GGLG+RS +E+N K+ WK+ S +I K+L + F +
Sbjct: 817 VSWDDVCKPKKEGGLGLRSLKEANDVCCLKVVWKIVSHGNSLWVKWIEKFLLKNETFWFV 876
Query: 126 -ELTGSSSYVWKGLVKAFSVLRDGLSFAIHDG-CTSFWYSDWTGLGKL 171
E T S++W+ L+K ++ ++ G CTSFWY DW+ +G++
Sbjct: 877 KENTTLGSWMWRKLIKFREKAKNFCKVEVNKGNCTSFWYDDWSNMGQM 924
>gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531298|ref|NP_919951.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22655797|gb|AAN04214.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 764
Score = 64.3 bits (155), Expect = 4e-09
Identities = 41/138 (29%), Positives = 65/138 (46%), Gaps = 10/138 (7%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWKLGSR-------IFITKYLKGSSIFSY 125
+ W+ + PK GGLG TR+ N++LL K ++L S + KY+K F
Sbjct: 376 IKWEALCRPKEFGGLGFIDTRKMNIALLCKWIYRLESGKEDPCCVLLRNKYMKDGGGFFQ 435
Query: 126 ELTGSSSYVWKGLVKAFSVLRDGLSFAIHDG-CTSFWYSDWTGLGKLCALVPFVH--ISD 182
SS WKGL + + G S+ + +G T+FW W G L P ++ +D
Sbjct: 436 SKAEESSQFWKGLHEVKKWMDLGSSYKVGNGKATNFWSDVWIGETPLKTQYPNIYRMCAD 495
Query: 183 TALTISDVWVEGSWNLSM 200
T+S + +EG W + +
Sbjct: 496 KEKTVSQMCLEGDWYIEL 513
>gb|AAG50806.1| unknown protein [Arabidopsis thaliana] gi|25403016|pir||D86384
unknown protein [imported] - Arabidopsis thaliana
Length = 1213
Score = 63.5 bits (153), Expect = 6e-09
Identities = 52/210 (24%), Positives = 91/210 (42%), Gaps = 24/210 (11%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWKLGSRIFITK-----------YLKGSS 121
V+W + LPK++GGLG+R E N +L +L W R+F+ K +L S
Sbjct: 853 VSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIW----RLFVAKDSLWADWQHLHHLSRGS 908
Query: 122 IFSYELTGSSSYVWKGLVKAFSVLRDGLSFAIHDGC-TSFWYSDWTGLGKLCALVPFVHI 180
++ E S S+ WK L+ + L + +G +WY +WT LG L ++ +
Sbjct: 909 FWAVEGGQSDSWTWKRLLSLRPLAHQFLVCKVGNGLKADYWYDNWTSLGPLFRIIGDIGP 968
Query: 181 SDTAL----TISDVWVEGSWNLSMLYTELPDPYKPTITSMQGPSHETVD-DCWVWNSNPA 235
S + ++ + E W L + + + ++ PS D D + W+ N
Sbjct: 969 SSLRVPLLAKVASAFSEDGWRLPVSRSAPAKGIHDHLCTVPVPSTAQEDVDRYEWSVN-- 1026
Query: 236 GYSCSDAYQWLRDWTVFRVLSVLGSMSSII 265
G+ C + + W R + + S +S I
Sbjct: 1027 GFLC-QGFSAAKTWEAIRPKATVKSWASSI 1055
>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
Length = 478
Score = 63.2 bits (152), Expect = 8e-09
Identities = 38/125 (30%), Positives = 66/125 (52%), Gaps = 12/125 (9%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWKLGS---------RIFITKYLKGSSIF 123
V W + PK++GGLG+RS +E+N L KL W++ S R+++ + KGS
Sbjct: 116 VAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLR--KGSFWS 173
Query: 124 SYELTGSSSYVWKGLVKAFSVLRDGLSFAIHDGC-TSFWYSDWTGLGKLCALVPFVHISD 182
T S++WK ++K ++ + IH+G TSFW+ +W+ +G+L + D
Sbjct: 174 ISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCID 233
Query: 183 TALTI 187
+T+
Sbjct: 234 MGITL 238
>emb|CAB78261.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|5281029|emb|CAB45965.1| putative reverse
transcriptase [Arabidopsis thaliana]
gi|11358670|pir||T48128 probable reverse transcriptase -
Arabidopsis thaliana
Length = 662
Score = 62.8 bits (151), Expect = 1e-08
Identities = 34/107 (31%), Positives = 58/107 (53%), Gaps = 8/107 (7%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWKL---GSRIFI----TKYLKGSSIFSY 125
+ W+ + PK +GGLG++S +E+N KL W++ G +++ T LK ++ +S+
Sbjct: 378 IAWETVCRPKREGGLGLQSIKEANDVCCLKLIWRIVSQGDSLWVQWIRTYLLKRNTFWSF 437
Query: 126 ELTGSSSYVWKGLVKAFSVLRDGLSFAIHDGCT-SFWYSDWTGLGKL 171
S++WK L+K + I +G T SFWY DW+ G+L
Sbjct: 438 RSASQGSWMWKKLLKYRDTAKAFSKVDIRNGETASFWYDDWSSKGRL 484
>emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultivar-group)]
gi|50928373|ref|XP_473714.1| OSJNBa0086O06.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1205
Score = 62.8 bits (151), Expect = 1e-08
Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 23/206 (11%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWK-------LGSRIFITKYLKGSSIFSY 125
+ W+++ PK GGLG R R N +LL + AW+ L +R+ KY +I
Sbjct: 827 IAWEKLTSPKLLGGLGFRDIRCFNQALLARQAWRLIESPDSLCARVLKAKYYPNGTITDT 886
Query: 126 ELTGSSSYVWKGLVKAFSVLRDGLSFAIHDGC-TSFWYSDWTGLGKLCALVP------FV 178
SS WKG+V +L+ GL + I DG T W + W G+ ++ +
Sbjct: 887 AFPSVSSPTWKGIVHGLELLKKGLIWRIGDGSKTKIWRNHWVAHGENLKILEKKTWNRVI 946
Query: 179 HISDTALTISDVWVEGSWNLSMLYTELPDPYKPTITSMQGPSHETVDDCWVWNSNPAG-Y 237
++ + +T + +WN ++ + + I ++ P E +D W+ G +
Sbjct: 947 YVRELIVTDTK-----TWNEPLIRHIIREEDADEILKIRIPQREE-EDFPAWHYEKTGIF 1000
Query: 238 SCSDAYQWLRDWTVFRVLSVLGSMSS 263
S Y+ W + R S S SS
Sbjct: 1001 SVRSVYRLA--WNLARKTSEQASSSS 1024
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 62.4 bits (150), Expect = 1e-08
Identities = 50/211 (23%), Positives = 92/211 (42%), Gaps = 31/211 (14%)
Query: 54 YWRRSDEGRSHLGTVVRDCVNWK---QIVLPKNQGGLGVRSTRESNVSLLGKLAWK---- 106
+W+ EGR ++WK + PK GGLG + N++LLGK W+
Sbjct: 826 WWKNKKEGRG---------LHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITE 876
Query: 107 ---LGSRIFITKYLKGSSIFSYELTGSSSYVWKGLVKAFSVLRDGLSFAIHDGCT-SFWY 162
L +++F ++Y S + L S+ WK + +A +++ G+ I +G T + W
Sbjct: 877 KDSLMAKVFKSRYFSKSDPLNAPLGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVWT 936
Query: 163 SDWTGL--GKLCALVPFVHI-----SDTALTISDVWVEG--SWNLSMLYTELPDPYKPTI 213
W G K V H+ +++ + D+ + WN +++ PD + I
Sbjct: 937 DPWIGAKPAKAAQAVKRSHLVSQYAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENI 996
Query: 214 TSMQGPSHETVDDCWVWNSNPAG-YSCSDAY 243
+++ P + D + W + +G YS Y
Sbjct: 997 LALR-PGGKETRDRFTWEYSRSGHYSVKSGY 1026
>gb|AAX95804.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 849
Score = 62.0 bits (149), Expect = 2e-08
Identities = 41/138 (29%), Positives = 61/138 (43%), Gaps = 10/138 (7%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWKLGS-------RIFITKYLKGSSIFSY 125
V W+ + PK+ GGLG TR N LL K +KL S + KY+ F
Sbjct: 557 VKWEALCRPKDFGGLGFLDTRVMNKVLLCKWIFKLESGQKDPCCDLLRRKYMMNGGGFFQ 616
Query: 126 ELTGSSSYVWKGLVKAFSVLRDGLSFAIHDG-CTSFWYSDWTGLGKLCALVPFVH--ISD 182
T S W+GL + L+ G + + DG T FW W G L P+++ ++D
Sbjct: 617 SSTEGCSQFWRGLHEVKHWLKLGSCYDLGDGSATRFWDDVWLGDTPLKIKFPYIYSIVAD 676
Query: 183 TALTISDVWVEGSWNLSM 200
T+S +W W + +
Sbjct: 677 PGKTVSQLWSSDGWRIDL 694
>pir||C86428 hypothetical protein T4K22.11 - Arabidopsis thaliana
gi|12322124|gb|AAG51098.1| hypothetical protein
[Arabidopsis thaliana]
Length = 504
Score = 61.6 bits (148), Expect = 2e-08
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 9/108 (8%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWKLGSRI--FITKYLKGS---SIFSY-- 125
+ W + PK +GGLG+RS +E+N KL W++ S K+++ S +F +
Sbjct: 190 IAWAFVCKPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLLKKVFFWAV 249
Query: 126 -ELTGSSSYVWKGLVKAFSVLRDGLSFAIHDGC-TSFWYSDWTGLGKL 171
E T S++W+ ++K + R I++G TSFWY DW+ LG+L
Sbjct: 250 RENTSLGSWMWRKILKFRDIARTLCKVEINNGAQTSFWYDDWSDLGRL 297
>emb|CAB78214.1| putative protein [Arabidopsis thaliana] gi|4539462|emb|CAB39942.1|
putative protein [Arabidopsis thaliana]
gi|15234273|ref|NP_192908.1| hypothetical protein
[Arabidopsis thaliana] gi|7487670|pir||T04218
hypothetical protein T5C23.140 - Arabidopsis thaliana
Length = 473
Score = 61.6 bits (148), Expect = 2e-08
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWKLGSRI--FITKYLKGSSIFSY----- 125
+ W + PK +GGLG+RS +E+N KL W++ S K+++ S +
Sbjct: 109 ITWAFVCKPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLLKKVSFWAV 168
Query: 126 -ELTGSSSYVWKGLVKAFSVLRDGLSFAIHDGC-TSFWYSDWTGLGKL 171
E T S++W+ ++K + R I++G TSFWY DW+ LG+L
Sbjct: 169 RENTSLGSWMWRKILKFRDIARTLCKVEINNGARTSFWYDDWSDLGRL 216
>gb|AAV43906.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|55167961|gb|AAV43830.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 697
Score = 61.6 bits (148), Expect = 2e-08
Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 11/161 (6%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWK-------LGSRIFITKYLKGSSIFSY 125
++W+++ PK GGLG R TR N +LL + AW+ L +R+ KY S+
Sbjct: 273 ISWEKLTSPKLHGGLGFRDTRSFNQALLARQAWRLIAEPNSLCARLLKAKYYPNGSLTDT 332
Query: 126 ELTGSSSYVWKGLVKAFSVLRDGLSFAIHD-GCTSFWYSDWTGLGKLCALVPFVHISDTA 184
++S WKG+ +L+ GL + I D T W + W G+ ++ + +
Sbjct: 333 AFPSNTSPTWKGIEHGLELLKKGLIWRIGDRRTTKIWRNRWVAHGEKVEVIQKKNWNRLT 392
Query: 185 LTISDVWVEG--SWNLSMLYTELPDPYKPTITSMQGPSHET 223
+ ++ + G +WN +++ + I + P+ ET
Sbjct: 393 Y-VHELLIPGTNAWNEALIRHVATEEDANAILKIHVPNQET 432
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 61.2 bits (147), Expect = 3e-08
Identities = 46/157 (29%), Positives = 74/157 (46%), Gaps = 13/157 (8%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWK-------LGSRIFITKYLKGSSIFSY 125
++W++I PK +GG+G+RS R+ N +L+ K+ W+ L +R+ KY G +
Sbjct: 702 LSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKVGGVQDTS 761
Query: 126 ELTGSS--SYVWKGL-VKAFSVLRDGLSFAIHDGCT-SFWYSDWTGLGKLCAL-VPFVHI 180
L S W+ + V V+ G+ + DGCT FW W L L +
Sbjct: 762 WLKPQPRWSSTWRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRWLLQEPLVELGTDMIPE 821
Query: 181 SDTALTISDVWVEGS-WNLSMLYTELPDPYKPTITSM 216
+ +D W+ GS WNL +L LP+ K + S+
Sbjct: 822 GERIKVAADYWLPGSGWNLEILGLYLPETVKRRLLSV 858
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 1223
Score = 61.2 bits (147), Expect = 3e-08
Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 9/108 (8%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWKLGSRI------FITKY-LKGSSIFSY 125
++W + PK++GGLG+RS +E+N KL WK+ S ++ ++ L+ +S +
Sbjct: 860 ISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEV 919
Query: 126 ELTGS-SSYVWKGLVKAFSVLRDGLSFAIHDG-CTSFWYSDWTGLGKL 171
+ T S S++WK L+K V + + +G TSFWY +W+ LG+L
Sbjct: 920 KQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDLGQL 967
>gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|50918647|ref|XP_469720.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1833
Score = 60.8 bits (146), Expect = 4e-08
Identities = 48/210 (22%), Positives = 94/210 (43%), Gaps = 32/210 (15%)
Query: 53 DYWRRSDEGRSHLGTVVRDCVNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWK------ 106
++W D G + + W++I+ PK+ GGLG R + N +LL + AW+
Sbjct: 736 NFWWGHDNGERKVHWIA-----WEKILYPKSHGGLGFRDMKCFNQALLARQAWRLLTSPD 790
Query: 107 -LGSRIFITKYLKGSSIFSYELTGSSSYVWKGLVKAFSVLRDGLSFAIHDGCT-SFWYSD 164
L +R+F KY ++ SS VWKG+ +L+ G + + +G W
Sbjct: 791 SLCARVFKAKYYPNGNLVDTAFPTVSSSVWKGIQHGLDLLKQGTIWRVGNGHNIKIWRHK 850
Query: 165 WTGLGKLCALVPFVHIS-------DTALTISDVWVEGS--WNLSMLYTELPDPYKPTITS 215
W G+ HI+ + + ++++ E + WN +++ L + +
Sbjct: 851 WVPHGE--------HINVLEKKGRNRLIYVNELINEENRCWNETLVRHVLKEEDANEVLK 902
Query: 216 MQGPSHETVDDCWVWNSNPAG-YSCSDAYQ 244
++ P+H+ +DD W+ +G ++ AY+
Sbjct: 903 IRLPNHQ-MDDFPAWHHEKSGLFTVKSAYK 931
>gb|AAG50886.1| hypothetical protein [Arabidopsis thaliana] gi|25405497|pir||E96556
hypothetical protein F19C24.27 [imported] - Arabidopsis
thaliana
Length = 629
Score = 60.5 bits (145), Expect = 5e-08
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 9/108 (8%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWKLGSR---IFI----TKYLKGSSIFSY 125
V+W I PK +GGLG+RS E+NV + KL W++ S +++ LK S +S
Sbjct: 265 VSWDDICKPKQEGGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSL 324
Query: 126 ELTGS-SSYVWKGLVKAFSVLRDGLSFAIHDGC-TSFWYSDWTGLGKL 171
S S++WK ++K + +++G TSFW+ +W+G+G L
Sbjct: 325 TPNSSLGSWMWKKMLKYRETAKPFSRVEVNNGARTSFWFDNWSGMGHL 372
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.136 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 532,925,885
Number of Sequences: 2540612
Number of extensions: 23060880
Number of successful extensions: 44088
Number of sequences better than 10.0: 158
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 43884
Number of HSP's gapped (non-prelim): 180
length of query: 287
length of database: 863,360,394
effective HSP length: 127
effective length of query: 160
effective length of database: 540,702,670
effective search space: 86512427200
effective search space used: 86512427200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 74 (33.1 bits)
Lotus: description of TM0083.3